View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16991_low_11 (Length: 539)
Name: NF16991_low_11
Description: NF16991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16991_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 16 - 513
Target Start/End: Original strand, 3283668 - 3284167
Alignment:
| Q |
16 |
gtttcctcggaaaatcacacatgatttcggaagtatacacattgagagtagagtgcttgtggggatgggaaaagttgagctctaatttaaagagtattgg |
115 |
Q |
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| T |
3283668 |
gtttcctcggaaaatcacacatgatttcggaagtatacacattgagagtagagtgcttgtggggatgggaaaagttgagctctaatttaaagagtactgg |
3283767 |
T |
|
| Q |
116 |
tatcgacactcatgttctcgtgactacatctagacttttcggctatgtttgaattggcatatggtgaaatgaagtgaaatagaataatcttgttagattt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3283768 |
tatcgacactcatgttctcgtgactacatctagacttttcggctatgtttgaattggcatatggtgaaatgtagtgaaatagaataatcttgttagattt |
3283867 |
T |
|
| Q |
216 |
taaaaatggacatatcctatttcatttcattttataccatcaatacaaacataccatttggaagtttattttttaatatatgcttttagaagatctaggt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3283868 |
taaaaatggacatatcctatttcatttcattttataccatcaatacgaacataccatttggaagtttattttttaatatatgcttttagaagatctaggt |
3283967 |
T |
|
| Q |
316 |
gtagtagcaagaccctaagtgttaatactagtgccctaatttgagtagtaacttgaaaacaacttgtttggaagcttctcaattggcaagcaagagaaac |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3283968 |
gtagtagcaagaccctaagtgttaatactagtgccctaatttgagtagtaacttgaaaacaacttgtttggaagcttctcaattggcaagcaggagaaac |
3284067 |
T |
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| Q |
416 |
aaaattgtctgatttagatagattctgacaagttgtt-aaacattgtaaattat-aatgttatgttcctaattgttttgtttaatggtttgatgatgtta |
513 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3284068 |
aaaattgtctgatttagatagattctgacaagttgttaaaacattgtaaattataaatgttatgttcctaattgttgtgtttaatggtttgatgatgtta |
3284167 |
T |
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