View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16991_low_13 (Length: 519)

Name: NF16991_low_13
Description: NF16991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16991_low_13
NF16991_low_13
[»] chr2 (13 HSPs)
chr2 (19-320)||(16638284-16638584)
chr2 (379-504)||(16638643-16638768)
chr2 (442-509)||(16638783-16638850)
chr2 (193-320)||(12884818-12884946)
chr2 (193-308)||(36500149-36500265)
chr2 (197-320)||(5862176-5862299)
chr2 (225-318)||(11377175-11377268)
chr2 (193-308)||(13194347-13194462)
chr2 (193-320)||(41166599-41166726)
chr2 (245-320)||(12041112-12041187)
chr2 (245-320)||(15320111-15320186)
chr2 (193-320)||(31719588-31719717)
chr2 (140-223)||(4658455-4658539)
[»] chr1 (23 HSPs)
chr1 (20-319)||(33770001-33770302)
chr1 (193-320)||(27507023-27507150)
chr1 (193-320)||(36202959-36203086)
chr1 (194-319)||(19051571-19051695)
chr1 (236-320)||(26344569-26344653)
chr1 (125-320)||(18310342-18310536)
chr1 (192-320)||(39157820-39157948)
chr1 (245-320)||(25559533-25559608)
chr1 (245-319)||(35375660-35375734)
chr1 (210-320)||(44056195-44056305)
chr1 (247-307)||(24630440-24630500)
chr1 (193-313)||(52380251-52380370)
chr1 (265-320)||(15881716-15881771)
chr1 (247-318)||(36781726-36781796)
chr1 (193-291)||(6248518-6248611)
chr1 (245-319)||(16063303-16063377)
chr1 (245-318)||(50471585-50471656)
chr1 (213-262)||(45949104-45949153)
chr1 (228-293)||(50951554-50951619)
chr1 (193-233)||(17652167-17652207)
chr1 (192-232)||(25865597-25865637)
chr1 (125-165)||(39185169-39185209)
chr1 (192-232)||(50311136-50311176)
[»] chr8 (14 HSPs)
chr8 (19-320)||(35687850-35688140)
chr8 (35-174)||(28072793-28072930)
chr8 (192-320)||(12659781-12659909)
chr8 (219-320)||(11219436-11219537)
chr8 (245-320)||(4785716-4785791)
chr8 (193-319)||(22810699-22810826)
chr8 (193-320)||(24681598-24681725)
chr8 (245-320)||(45366847-45366922)
chr8 (210-320)||(26774847-26774957)
chr8 (192-308)||(9012362-9012474)
chr8 (193-233)||(3155622-3155662)
chr8 (22-73)||(45366635-45366686)
chr8 (126-167)||(29914155-29914196)
chr8 (244-320)||(28072650-28072726)
[»] chr6 (11 HSPs)
chr6 (129-318)||(6267383-6267563)
chr6 (19-114)||(15837695-15837789)
chr6 (193-320)||(8064932-8065060)
chr6 (236-320)||(15837210-15837294)
chr6 (225-320)||(9686520-9686615)
chr6 (120-255)||(28611091-28611233)
chr6 (239-320)||(4577572-4577653)
chr6 (19-113)||(6267256-6267350)
chr6 (245-317)||(29049027-29049099)
chr6 (125-291)||(891883-892050)
chr6 (236-316)||(7169605-7169686)
[»] chr3 (16 HSPs)
chr3 (35-308)||(20038762-20039034)
chr3 (193-320)||(46252956-46253083)
chr3 (192-320)||(51661883-51662011)
chr3 (192-320)||(51194690-51194820)
chr3 (128-319)||(40484378-40484559)
chr3 (210-298)||(42362752-42362840)
chr3 (193-308)||(2565824-2565939)
chr3 (236-318)||(4280780-4280861)
chr3 (239-320)||(45914727-45914808)
chr3 (210-318)||(51660519-51660622)
chr3 (193-320)||(22255809-22255935)
chr3 (35-219)||(32073025-32073212)
chr3 (208-318)||(38651553-38651663)
chr3 (245-320)||(34185408-34185483)
chr3 (245-308)||(45629674-45629736)
chr3 (126-167)||(21238520-21238561)
[»] chr4 (26 HSPs)
chr4 (19-320)||(10777887-10778179)
chr4 (193-320)||(20986844-20986971)
chr4 (125-320)||(54273444-54273630)
chr4 (192-292)||(41260553-41260653)
chr4 (197-320)||(8485127-8485250)
chr4 (210-320)||(3999216-3999326)
chr4 (210-308)||(48338800-48338898)
chr4 (193-308)||(21069503-21069617)
chr4 (193-308)||(23449508-23449623)
chr4 (193-320)||(28148209-28148336)
chr4 (192-302)||(48602039-48602148)
chr4 (195-320)||(41325842-41325967)
chr4 (193-320)||(48653415-48653543)
chr4 (193-320)||(48292941-48293068)
chr4 (211-319)||(45983794-45983902)
chr4 (225-320)||(15724310-15724405)
chr4 (245-319)||(46471912-46471986)
chr4 (219-320)||(1564568-1564669)
chr4 (193-317)||(29233194-29233313)
chr4 (257-320)||(15986092-15986155)
chr4 (193-308)||(18536182-18536297)
chr4 (225-320)||(23119817-23119912)
chr4 (210-320)||(18881564-18881674)
chr4 (266-320)||(29233307-29233361)
chr4 (210-319)||(35014734-35014843)
chr4 (212-320)||(45226805-45226913)
[»] chr7 (16 HSPs)
chr7 (193-318)||(29628658-29628783)
chr7 (193-313)||(31287295-31287415)
chr7 (193-318)||(524381-524506)
chr7 (193-308)||(40849303-40849418)
chr7 (193-320)||(1812924-1813046)
chr7 (193-308)||(11399567-11399681)
chr7 (193-320)||(8568061-8568187)
chr7 (192-318)||(31011278-31011399)
chr7 (274-318)||(33435507-33435551)
chr7 (193-308)||(22298975-22299090)
chr7 (212-291)||(27214731-27214810)
chr7 (193-319)||(10338044-10338177)
chr7 (193-291)||(22700881-22700978)
chr7 (228-318)||(26956312-26956401)
chr7 (192-242)||(35495851-35495901)
chr7 (193-233)||(46147654-46147694)
[»] chr5 (23 HSPs)
chr5 (192-318)||(40109059-40109185)
chr5 (193-320)||(25495537-25495663)
chr5 (225-318)||(28224377-28224470)
chr5 (199-320)||(36568157-36568278)
chr5 (210-305)||(23623464-23623559)
chr5 (193-320)||(41455318-41455445)
chr5 (192-313)||(22553801-22553920)
chr5 (195-320)||(33901511-33901636)
chr5 (194-282)||(18432535-18432623)
chr5 (245-318)||(23418455-23418528)
chr5 (192-320)||(4414664-4414791)
chr5 (252-320)||(15216554-15216622)
chr5 (192-308)||(40331008-40331123)
chr5 (19-74)||(1681483-1681538)
chr5 (228-307)||(2796355-2796434)
chr5 (228-307)||(2802516-2802595)
chr5 (183-230)||(15216633-15216680)
chr5 (193-307)||(18845959-18846074)
chr5 (213-319)||(691122-691228)
chr5 (37-219)||(8151008-8151190)
chr5 (192-318)||(19402678-19402803)
chr5 (271-320)||(42119338-42119387)
chr5 (247-307)||(22747121-22747181)
[»] scaffold0204 (1 HSPs)
scaffold0204 (210-308)||(26322-26420)
[»] scaffold0688 (2 HSPs)
scaffold0688 (192-277)||(1622-1707)
scaffold0688 (192-263)||(3215-3286)


Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 320
Target Start/End: Original strand, 16638284 - 16638584
Alignment:
Q  19 caaaagtgcaattatgattaaattaaagcacataaatatcattttaaaatcaaaagtatagnnnnnnncttaacaagaggaacaatatgtcttagtacaa 118  Q
    ||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||       ||||||||||| || |||||||||||||| ||    
T  16638284 caaaagtgcaattataattatattaaagcacataaataccattttaaaatcaaaagtatagaaaaaa-cttaacaagagcaataatatgtcttagtaaaa 16638382  T
Q  119 aaaatggagaaaaaacatgttattctataaaattgttcattgaatttctaggagtaatagatttgtgacccaggtttaattagtgtttcttttatgttgc 218  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| | ||||||| |  |||||||||||||||| |||||||||    
T  16638383 aaaatggagaaaaaacatgtcattctataaaattgttcattgaatttctaggagtactaggtctgtgacctaaatttaattagtgtttctcttatgttgc 16638482  T
Q  219 ggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatccgaatacatctgaaccaaat 318  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||    
T  16638483 ggttttgtttggttttattcggttactaaaataaaaaccgcaaacataacctaaccatacggtttagtaaaaatatgatccgaatacatctgaatcaaat 16638582  T
Q  319 gc 320  Q
    ||    
T  16638583 gc 16638584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 379 - 504
Target Start/End: Original strand, 16638643 - 16638768
Alignment:
Q  379 aacacccctactagcaataaattaaacgtcccttcagctacaaattgaagtctacttacacggtgtatgaaatttattttaattatattttcgtcgaata 478  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16638643 aacacccctactagcaataaattaaacgtcccttcagctacaaattgaagtctacttacacggtgtatgaaatttattttaattatattttcgtcgaata 16638742  T
Q  479 gtttagcgacgagaatcacaccccac 504  Q
    ||||||| ||||||||||||||||||    
T  16638743 gtttagctacgagaatcacaccccac 16638768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 442 - 509
Target Start/End: Original strand, 16638783 - 16638850
Alignment:
Q  442 tgtatgaaatttattttaattatattttcgtcgaatagtttagcgacgagaatcacaccccacctttg 509  Q
    ||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  16638783 tgtatgaaattaattttaattatattttcgtctaatagtttagggacgagaatcacaccccacctttg 16638850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 193 - 320
Target Start/End: Original strand, 12884818 - 12884946
Alignment:
Q  193 tttaattagtgtttcttttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagt-aaaaa 291  Q
    |||||||||||||| |  ||| ||||||||| |||||||||  ||| |||  |||||| |||| | ||||| ||||| ||||||||| || ||| |||||    
T  12884818 tttaattagtgtttttcatatattgcggtttggtttggtttggttcagttggtaaaatcaaaaccccaaaccgaaccaaaccatgcgattgagtaaaaaa 12884917  T
Q  292 tatgatccgaatacatctgaaccaaatgc 320  Q
     ||||||||||||||||||||||||||||    
T  12884918 aatgatccgaatacatctgaaccaaatgc 12884946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 193 - 308
Target Start/End: Complemental strand, 36500265 - 36500149
Alignment:
Q  193 tttaattagtgtttcttttatgttgcggttttgtttggttttattcgg-ttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaa 291  Q
    |||||||||||||| |  |||||||||||||  ||||||||  ||||| ||  ||||||||||| || ||||  |||| ||| |||||||| ||||||||    
T  36500265 tttaattagtgtttttgctatgttgcggtttgatttggtttggttcgggttggtaaaataaaaaccgaaaaccaaaccaaactatgcggttgagtaaaaa 36500166  T
Q  292 tatgatccgaatacatc 308  Q
     ||||||||||||||||    
T  36500165 aatgatccgaatacatc 36500149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 197 - 320
Target Start/End: Complemental strand, 5862299 - 5862176
Alignment:
Q  197 attagtgtttcttttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatga 296  Q
    |||||||||| | |||| ||||||||| |||||||||  || ||||  |||||| |||| | ||||| ||||| || ||||||||| ||||||||  ||     
T  5862299 attagtgtttttcttatattgcggtttggtttggtttggtttggttggtaaaatcaaaaccacaaaccgaaccaaaacatgcggttgagtaaaaaagtgc 5862200  T
Q  297 tccgaatacatctgaaccaaatgc 320  Q
    || ||||||||| |||||||||||    
T  5862199 tctgaatacatccgaaccaaatgc 5862176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 225 - 318
Target Start/End: Complemental strand, 11377268 - 11377175
Alignment:
Q  225 gtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatccgaatacatctgaaccaaat 318  Q
    ||||||||| ||||| ||  |||||||||||||| |||| ||| | ||| || ||||| ||||||||  ||||||||||||||| |||||||||    
T  11377268 gtttggtttgattcgattggtaaaataaaaatcgtaaactgaatcaaactatacggttgagtaaaaaagtgatccgaatacatccgaaccaaat 11377175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 193 - 308
Target Start/End: Original strand, 13194347 - 13194462
Alignment:
Q  193 tttaattagtgtttcttttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaat 292  Q
    ||||||||  |||| | |||||||| ||||| ||||||||| |||||||   ||||||||||| ||||||   |||| ||||||| |||| ||||||||     
T  13194347 tttaattaaagtttttcttatgttgtggtttggtttggtttgattcggtccgtaaaataaaaaccgcaaatcaaaccaaaccatgtggttgagtaaaaac 13194446  T
Q  293 atgatccgaatacatc 308  Q
     ||||||| |||||||    
T  13194447 gtgatccggatacatc 13194462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 193 - 320
Target Start/End: Original strand, 41166599 - 41166726
Alignment:
Q  193 tttaattagtgtttcttttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaat 292  Q
    ||||||||||| || | |||||||| ||||| |||||||||  |||||||  |||||| |||| |||||||  || | |||||||||||| ||| ||||     
T  41166599 tttaattagtgcttttattatgttgtggtttggtttggtttggttcggttggtaaaatgaaaaccgcaaaccaaatcaaaccatgcggttgagtgaaaaa 41166698  T
Q  293 atgatccgaatacatctgaaccaaatgc 320  Q
     ||||| |||| ||||  ||||||||||    
T  41166699 gtgatctgaatgcatccaaaccaaatgc 41166726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 320
Target Start/End: Complemental strand, 12041187 - 12041112
Alignment:
Q  245 taaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatccgaatacatctgaaccaaatgc 320  Q
    |||||| |||| |||||||  |||| ||| |||||||| ||||||||  |||||||||||||||  ||||||||||    
T  12041187 taaaatgaaaaccgcaaaccaaaccaaactatgcggttgagtaaaaaagtgatccgaatacatccaaaccaaatgc 12041112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 320
Target Start/End: Complemental strand, 15320186 - 15320111
Alignment:
Q  245 taaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatccgaatacatctgaaccaaatgc 320  Q
    ||||||||||| |||||||  |||| ||||||| |||| |||||||| || ||| |||||||||  ||||||||||    
T  15320186 taaaataaaaaccgcaaaccaaaccaaaccatgtggttgagtaaaaaaattatctgaatacatcctaaccaaatgc 15320111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 320
Target Start/End: Complemental strand, 31719717 - 31719588
Alignment:
Q  193 tttaattagtgtttcttttatgttgcggttttgtttggttttattcggttactaaaat-aaaaatcgcaaacagaacctaaccatgcggttcagtaaaaa 291  Q
    ||||||||||| || | ||||||||||||||  ||||||||  |||||||| |||||| ||||  |||||||  || | |||||||| ||  ||||||||    
T  31719717 tttaattagtggttttattatgttgcggtttgatttggtttggttcggttagtaaaatgaaaacacgcaaaccaaatcaaaccatgcagtagagtaaaaa 31719618  T
Q  292 ta-tgatccgaatacatctgaaccaaatgc 320  Q
     | ||||| |||||||||  ||||||||||    
T  31719617 aagtgatcagaatacatccaaaccaaatgc 31719588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 140 - 223
Target Start/End: Original strand, 4658455 - 4658539
Alignment:
Q  140 attctataaaattgttcattgaatttctaggagtaatagatt-tgtgacccaggtttaattagtgtttcttttatgttgcggttt 223  Q
    |||||||||||||  |||||||||||||| ||||| ||| ||  |||||  | ||||||||||||||| | ||||||| ||||||    
T  4658455 attctataaaatttctcattgaatttctacgagtactaggttgggtgacaaaagtttaattagtgtttttcttatgttacggttt 4658539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 3e-46; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 20 - 319
Target Start/End: Original strand, 33770001 - 33770302
Alignment:
Q  20 aaaagtgcaattatgattaaattaaagcacataaatatcattttaaaatcaaaagtatagnnnnnnncttaacaagaggaacaatatgtcttagtacaaa 119  Q
    ||||| |||| ||| ||||||||||||||||||||||  | || ||||||||||| ||||       ||||| ||||||||||||||||||||||| |||    
T  33770001 aaaagcgcaagtataattaaattaaagcacataaatacaagttcaaaatcaaaagcatagaaaaaa-cttaaaaagaggaacaatatgtcttagtaaaaa 33770099  T
Q  120 aaatggagaaaaaacatgttattctataaaattgttcattgaatt---tctaggagtaatagatttgtgacccaggtttaattagtgtttcttttatgtt 216  Q
    ||| |  |||||||||||| |||||||||||||  ||||||||||   |||| ||||| ||| ||||||||| | ||||||||| |  || | |||| ||    
T  33770100 aaaagtggaaaaaacatgtcattctataaaatttctcattgaattatttctatgagtactaggtttgtgacctacgtttaattaatagttttcttatatt 33770199  T
Q  217 gcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatccgaatacatctgaaccaa 316  Q
    |||||||  || | |||  ||||||| |||||||||||||||||||||||||| || ||||| ||| | |||||||||||| |||||||||| ||| |||    
T  33770200 gcggtttgattcgatttggttcggttgctaaaataaaaatcgcaaacagaaccgaatcatgcagttgaataaaaatatgattcgaatacatccgaatcaa 33770299  T
Q  317 atg 319  Q
    |||    
T  33770300 atg 33770302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 193 - 320
Target Start/End: Complemental strand, 27507150 - 27507023
Alignment:
Q  193 tttaattagtgtttcttttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaat 292  Q
    |||||||||||||| | |||| ||||||||| |||||||||  ||| |||  |||||| |||| ||||||| ||||| || ||||||||| ||||||||     
T  27507150 tttaattagtgtttttcttatattgcggtttggtttggtttggttcagttggtaaaatcaaaaccgcaaaccgaaccaaagcatgcggttgagtaaaaaa 27507051  T
Q  293 atgatccgaatacatctgaaccaaatgc 320  Q
    |||||||||||||||| |||||||||||    
T  27507050 atgatccgaatacatccgaaccaaatgc 27507023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 193 - 320
Target Start/End: Complemental strand, 36203086 - 36202959
Alignment:
Q  193 tttaattagtgtttcttttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaat 292  Q
    |||||||||||||| | |||||||||||||| ||||||| |  |||||||  |||||| |||  |||||||  |||| |||||||||||| |||||||||    
T  36203086 tttaattagtgtttttattatgttgcggtttggtttggtatggttcggttggtaaaatgaaagccgcaaaccaaaccaaaccatgcggttgagtaaaaat 36202987  T
Q  293 atgatccgaatacatctgaaccaaatgc 320  Q
     ||| |||||||||||  ||||||||||    
T  36202986 gtgaaccgaatacatccaaaccaaatgc 36202959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 194 - 319
Target Start/End: Original strand, 19051571 - 19051695
Alignment:
Q  194 ttaattagtgtttcttttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaata 293  Q
    ||||||||||||| | |||||||||||||  |||||| || ||||||||| ||  ||||||| ||||||| | | | |||||||||||| |||||||| |    
T  19051571 ttaattagtgtttttcttatgttgcggttaggtttggatt-attcggttagtaggataaaaaccgcaaaccgcagcaaaccatgcggttaagtaaaaaaa 19051669  T
Q  294 tgatccgaatacatctgaaccaaatg 319  Q
    | |||  |||||||||||||||||||    
T  19051670 ttatctaaatacatctgaaccaaatg 19051695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 236 - 320
Target Start/End: Complemental strand, 26344653 - 26344569
Alignment:
Q  236 ttcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatccgaatacatctgaaccaaatgc 320  Q
    |||||||  |||||| ||||  |||||| ||||| |||||||||||| ||||||||  ||||||||||||||| |||||||||||    
T  26344653 ttcggttggtaaaatcaaaactgcaaaccgaaccaaaccatgcggttgagtaaaaaattgatccgaatacatccgaaccaaatgc 26344569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 125 - 320
Target Start/End: Original strand, 18310342 - 18310536
Alignment:
Q  125 gagaaaaaacatgttattctataaaattgttcattgaatttctaggagtaatagatttg-tgacccaggtttaattagtgtttcttttatgttgcggttt 223  Q
    |||||||||||||| ||| ||||||| | |||||||||||||||  |||| | | ||   ||||  | ||||||||||||| | | | ||||||||||||    
T  18310342 gagaaaaaacatgtcattttataaaagttttcattgaatttctataagtattggtttaaatgacatatgtttaattagtgtatttctaatgttgcggttt 18310441  T
Q  224 tgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatccgaatacatctgaaccaaatgc 320  Q
     |||||||||  |||| ||  ||||||||||| | | |||  |||| ||||||| |||| ||| |||| |||||||  ||||||| |||||||||||    
T  18310442 ggtttggtttggttcgtttgataaaataaaaaccactaaccaaaccaaaccatgtggttgagtcaaaaaatgatcc--atacatccgaaccaaatgc 18310536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 320
Target Start/End: Complemental strand, 39157948 - 39157820
Alignment:
Q  192 gtttaattagtgtttcttttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaa 291  Q
    ||||||||||||||| | ||||||||||||||  ||||||||  |||||||  ||||||||||| | |||||  |||  ||| || | ||| ||||| ||    
T  39157948 gtttaattagtgtttatcttatgttgcggtttgatttggtttggttcggttgataaaataaaaaccacaaaccaaactaaactatacagttgagtaagaa 39157849  T
Q  292 tatgatccgaatacatctgaaccaaatgc 320  Q
      |||||| |||||||| |||||||||||    
T  39157848 agtgatccaaatacatccgaaccaaatgc 39157820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 245 - 320
Target Start/End: Complemental strand, 25559608 - 25559533
Alignment:
Q  245 taaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatccgaatacatctgaaccaaatgc 320  Q
    |||||| |||| | ||||| ||||| |||||| ||||| |||||||| |||||||||||| ||| |||||||||||    
T  25559608 taaaatcaaaaccacaaaccgaaccaaaccatacggttgagtaaaaaaatgatccgaatatatccgaaccaaatgc 25559533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 319
Target Start/End: Original strand, 35375660 - 35375734
Alignment:
Q  245 taaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatccgaatacatctgaaccaaatg 319  Q
    ||||||||||| |||||||  |||  |||||||||||| |||||||| |||||| ||||||||  ||||||||||    
T  35375660 taaaataaaaaccgcaaaccaaacaaaaccatgcggttgagtaaaaaaatgatctgaatacattcgaaccaaatg 35375734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 320
Target Start/End: Original strand, 44056195 - 44056305
Alignment:
Q  210 ttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatccgaatacatct 309  Q
    ||||||||| |||| |||||||||  ||| |||  |||||| |||| |||||||| |||| |||||||||||| ||||| || |||| |||| |||||      
T  44056195 ttatgttgcagtttggtttggtttggttcagttggtaaaatgaaaaccgcaaacataaccaaaccatgcggttgagtaagaaaatgacccgattacattc 44056294  T
Q  310 gaaccaaatgc 320  Q
     ||||||||||    
T  44056295 aaaccaaatgc 44056305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 247 - 307
Target Start/End: Original strand, 24630440 - 24630500
Alignment:
Q  247 aaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatccgaatacat 307  Q
    ||||||||| ||||||| ||||| |||||||||||| ||||||||  |||||| |||||||    
T  24630440 aaataaaaaccgcaaactgaaccaaaccatgcggttgagtaaaaaagtgatccaaatacat 24630500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 193 - 313
Target Start/End: Complemental strand, 52380370 - 52380251
Alignment:
Q  193 tttaattagtgtttcttttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaat 292  Q
    |||||||||||||| | |||| ||| ||||| |||||||||  |||||||  |||||| |||||||||||| || || ||||||    || ||||||||     
T  52380370 tttaattagtgtttttcttatattggggtttagtttggtttggttcggttggtaaaatcaaaatcgcaaaccgatccaaaccatataattgagtaaaaa- 52380272  T
Q  293 atgatccgaatacatctgaac 313  Q
    |||||| ||||||||| ||||    
T  52380271 atgatctgaatacatccgaac 52380251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 320
Target Start/End: Complemental strand, 15881771 - 15881716
Alignment:
Q  265 gaacctaaccatgcggttcagtaaaaatatgatccgaatacatctgaaccaaatgc 320  Q
    ||||| |||||||  ||| |||||||||||||||| ||||||| ||||||||||||    
T  15881771 gaaccaaaccatgtagttgagtaaaaatatgatccaaatacatttgaaccaaatgc 15881716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 318
Target Start/End: Complemental strand, 36781796 - 36781726
Alignment:
Q  247 aaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatccgaatacatctgaaccaaat 318  Q
    |||| |||| ||||||| ||||| |||||||||||| ||||||||| ||||| |||||||||  ||||||||    
T  36781796 aaatcaaaaccgcaaaccgaaccaaaccatgcggttgagtaaaaat-tgatctgaatacatccaaaccaaat 36781726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 193 - 291
Target Start/End: Original strand, 6248518 - 6248611
Alignment:
Q  193 tttaattagtgtttcttttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaa 291  Q
    |||||||||||||| | |||| ||||||||| ||||||||     |||||  |||||| |||| ||||||| ||||| ||||||||||||  |||||||    
T  6248518 tttaattagtgtttttcttatattgcggtttggtttggtt-----cggttggtaaaatcaaaaccgcaaaccgaaccaaaccatgcggttgggtaaaaa 6248611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 245 - 319
Target Start/End: Original strand, 16063303 - 16063377
Alignment:
Q  245 taaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatccgaatacatctgaaccaaatg 319  Q
    |||||| |||| ||||||| ||||| || ||||||||| |||||||| || || ||||||||||| || ||||||    
T  16063303 taaaatcaaaaccgcaaactgaaccaaatcatgcggttgagtaaaaaaattattcgaatacatctaaatcaaatg 16063377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 245 - 318
Target Start/End: Original strand, 50471585 - 50471656
Alignment:
Q  245 taaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatccgaatacatctgaaccaaat 318  Q
    |||||| |||| ||||||| ||||| |||||||| ||| |||| ||||  ||||||||||||| ||||||||||    
T  50471585 taaaatcaaaaccgcaaaccgaaccaaaccatgcagttgagtagaaat--gatccgaatacatttgaaccaaat 50471656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 262
Target Start/End: Complemental strand, 45949153 - 45949104
Alignment:
Q  213 tgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaa 262  Q
    |||||||||||||||||||||  |||||||  ||||||||||| ||||||    
T  45949153 tgttgcggttttgtttggtttggttcggttggtaaaataaaaaccgcaaa 45949104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 293
Target Start/End: Complemental strand, 50951619 - 50951554
Alignment:
Q  228 tggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaata 293  Q
    |||||| ||| ||||| ||||||||||| ||| ||| ||||| |||||||||||| | ||||||||    
T  50951619 tggtttgatttggttagtaaaataaaaaccgccaaccgaaccaaaccatgcggttgaataaaaata 50951554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 17652167 - 17652207
Alignment:
Q  193 tttaattagtgtttcttttatgttgcggttttgtttggttt 233  Q
    |||||||||||||| | |||||||||||||| |||||||||    
T  17652167 tttaattagtgtttttcttatgttgcggtttggtttggttt 17652207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 25865637 - 25865597
Alignment:
Q  192 gtttaattagtgtttcttttatgttgcggttttgtttggtt 232  Q
    ||||||||||||||| |||||||||||||||| ||| ||||    
T  25865637 gtttaattagtgttttttttatgttgcggtttagttcggtt 25865597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 39185209 - 39185169
Alignment:
Q  125 gagaaaaaacatgttattctataaaattgttcattgaattt 165  Q
    ||||||||||||||||||||| |||||| | ||||||||||    
T  39185209 gagaaaaaacatgttattctacaaaattttccattgaattt 39185169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 232
Target Start/End: Original strand, 50311136 - 50311176
Alignment:
Q  192 gtttaattagtgtttcttttatgttgcggttttgtttggtt 232  Q
    ||||||||||||||||||||||||||| |||| ||| ||||    
T  50311136 gtttaattagtgtttcttttatgttgcagtttggttcggtt 50311176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 3e-43; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 19 - 320
Target Start/End: Complemental strand, 35688140 - 35687850
Alignment:
Q  19 caaaagtgcaattatgattaaattaaagcacataaatatcattttaaaatcaaaagtatagnnnnnnncttaacaagaggaacaatatgtcttagtacaa 118  Q
    ||||||||||| ||| |||||||||||||| |||||||  ||||||||||||||||| |||       ||||| ||||||| ||||||||||||||  ||    
T  35688140 caaaagtgcaagtataattaaattaaagcatataaatacaattttaaaatcaaaagtgtagaaaaaa-cttaaaaagaggagcaatatgtcttagttaaa 35688042  T
Q  119 aaaatggagaaaaaacatgttattctataaaattgttcattgaatttctaggagtaatagatttgtgacccaggtttaattagtgtttct-tttatgttg 217  Q
    ||||   ||||||||||||| |||||||||||||  |||||||||||||| ||||| | | |||||  || | ||||||||||||||| | |||||||||    
T  35688041 aaaaaa-agaaaaaacatgtcattctataaaatttctcattgaatttctatgagtacttggtttgtatcctaagtttaattagtgtttttctttatgttg 35687943  T
Q  218 cggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatccgaatacatctgaaccaaa 317  Q
    |||||| |          |||||||||||||||||||||||||||   |||| || ||||||||| ||||||||||||||| ||||||||||||  ||||    
T  35687942 cggtttgg----------ttcggttactaaaataaaaatcgcaaatcaaaccaaatcatgcggttgagtaaaaatatgatcagaatacatctgagtcaaa 35687853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 35 - 174
Target Start/End: Complemental strand, 28072930 - 28072793
Alignment:
Q  35 attaaattaaagcacataaatatcattttaaaatcaaaagtatagnnnnnnncttaacaagaggaacaatatgtcttagtacaaaaaatggagaaaaaac 134  Q
    |||||||||||||||||||||   |||||||||||||||| ||||       ||||||||||||||||||||||||||||  ||||||  ||||||||||    
T  28072930 attaaattaaagcacataaatgcaattttaaaatcaaaagcatagaaaaaaacttaacaagaggaacaatatgtcttagtcaaaaaaa--gagaaaaaac 28072833  T
Q  135 atgttattctataaaattgttcattgaatttctaggagta 174  Q
    |||| |||||||||||||  |||||||||||||| |||||    
T  28072832 atgtcattctataaaatttctcattgaatttctacgagta 28072793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 192 - 320
Target Start/End: Complemental strand, 12659909 - 12659781
Alignment:
Q  192 gtttaattagtgtttcttttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaa 291  Q
    ||||||||| ||||| |  ||||||| ||||| |||||||||  |||||||  ||||||| ||| ||||||| ||||| |||||||||||| ||||| ||    
T  12659909 gtttaattaatgtttttcctatgttgtggtttggtttggtttggttcggttggtaaaatagaaaccgcaaactgaaccaaaccatgcggttgagtaagaa 12659810  T
Q  292 tatgatccgaatacatctgaaccaaatgc 320  Q
     | |||||||||||||| |||||||||||    
T  12659809 aacgatccgaatacatccgaaccaaatgc 12659781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 219 - 320
Target Start/End: Original strand, 11219436 - 11219537
Alignment:
Q  219 ggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatccgaatacatctgaaccaaat 318  Q
    ||||| |||||||||  |||||||  |||||| |||| ||||||| ||||| ||||||| | || |||||||| |||||||||||||||| |||||||||    
T  11219436 ggtttggtttggtttggttcggttggtaaaatcaaaaccgcaaaccgaaccaaaccatgtgattgagtaaaaaaatgatccgaatacatccgaaccaaat 11219535  T
Q  319 gc 320  Q
    ||    
T  11219536 gc 11219537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 245 - 320
Target Start/End: Original strand, 4785716 - 4785791
Alignment:
Q  245 taaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatccgaatacatctgaaccaaatgc 320  Q
    |||||| ||||  |||||| ||||| |||||||||||| ||||||||  |||||| ||||||||||||||||||||    
T  4785716 taaaatcaaaactgcaaaccgaaccaaaccatgcggttgagtaaaaaattgatccaaatacatctgaaccaaatgc 4785791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 193 - 319
Target Start/End: Complemental strand, 22810826 - 22810699
Alignment:
Q  193 tttaattagtgtttcttttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagt-aaaaa 291  Q
    |||||||||||||| | |||| ||| |||||  ||||||||  |||||||  |||||| ||||| ||||||  |||| |||||||||||| ||| |||||    
T  22810826 tttaattagtgtttttcttatattgtggtttgatttggtttggttcggtttgtaaaatcaaaattgcaaacctaaccaaaccatgcggtttagtaaaaaa 22810727  T
Q  292 tatgatccgaatacatctgaaccaaatg 319  Q
     ||||| | ||||||||  |||||||||    
T  22810726 aatgattcaaatacatccaaaccaaatg 22810699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 193 - 320
Target Start/End: Complemental strand, 24681725 - 24681598
Alignment:
Q  193 tttaattagtgtttcttttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaat 292  Q
    |||||||||||||| | |||| ||| |||||  ||||||||  ||||| |  |||||| || | ||||||| ||||| |||||| ||||| || |||||     
T  24681725 tttaattagtgtttttcttatattgtggtttgttttggtttagttcggctggtaaaatcaagaccgcaaaccgaaccaaaccatacggttgagcaaaaaa 24681626  T
Q  293 atgatccgaatacatctgaaccaaatgc 320  Q
     |||||||||||||||  ||||||||||    
T  24681625 ttgatccgaatacatccaaaccaaatgc 24681598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 245 - 320
Target Start/End: Original strand, 45366847 - 45366922
Alignment:
Q  245 taaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatccgaatacatctgaaccaaatgc 320  Q
    ||||||||||||| ||||| ||||| ||| |||  ||| |||||||| |||| ||||||||||| |||||||||||    
T  45366847 taaaataaaaatcacaaaccgaaccaaactatgttgttgagtaaaaaaatgacccgaatacatccgaaccaaatgc 45366922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 320
Target Start/End: Complemental strand, 26774957 - 26774847
Alignment:
Q  210 ttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatccgaatacatct 309  Q
    |||| ||||||||| ||||| |||  |||||||  |||||||||||  |||||| ||||| |||||||||||| ||||| || | |||  |||||||||     
T  26774957 ttattttgcggtttggtttgatttggttcggttggtaaaataaaaactgcaaactgaaccaaaccatgcggttgagtaagaaaacgatatgaatacatcc 26774858  T
Q  310 gaaccaaatgc 320  Q
    || ||||||||    
T  26774857 gatccaaatgc 26774847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 192 - 308
Target Start/End: Complemental strand, 9012474 - 9012362
Alignment:
Q  192 gtttaattagtgtttctttt-atgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaa 290  Q
    ||||||||||||||| |||| |||||||||||| |||||  ||  |||||||  ||| || |||| |||||||     | |||||||||||| |||||||    
T  9012474 gtttaattagtgtttttttttatgttgcggtttggtttgtattggttcggttggtaagatgaaaaccgcaaac-----caaaccatgcggttgagtaaaa 9012380  T
Q  291 atatgatccgaatacatc 308  Q
    | ||||||||||||||||    
T  9012379 aaatgatccgaatacatc 9012362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 3155662 - 3155622
Alignment:
Q  193 tttaattagtgtttcttttatgttgcggttttgtttggttt 233  Q
    |||||||||||||| |||||||||||||||| |||||||||    
T  3155662 tttaattagtgttttttttatgttgcggtttggtttggttt 3155622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 45366635 - 45366686
Alignment:
Q  22 aagtgcaattatgattaaattaaagcacataaatatcattttaaaatcaaaa 73  Q
    |||||||||||| |||||| ||||||||  |||||| |||||||||||||||    
T  45366635 aagtgcaattataattaaactaaagcacgaaaatataattttaaaatcaaaa 45366686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 167
Target Start/End: Complemental strand, 29914196 - 29914155
Alignment:
Q  126 agaaaaaacatgttattctataaaattgttcattgaatttct 167  Q
    |||||||||||||||||||||||||||  | |||||||||||    
T  29914196 agaaaaaacatgttattctataaaatttctaattgaatttct 29914155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 320
Target Start/End: Complemental strand, 28072726 - 28072650
Alignment:
Q  244 ctaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatccgaatacatctgaaccaaatgc 320  Q
    |||||||||||| |||||||  |||| || ||||||||| |||||||||| | ||  ||||| || |||||||||||    
T  28072726 ctaaaataaaaaccgcaaaccaaaccaaaacatgcggttgagtaaaaataagttctaaatacttccgaaccaaatgc 28072650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 9e-28; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 129 - 318
Target Start/End: Original strand, 6267383 - 6267563
Alignment:
Q  129 aaaaacatgttattctataaaattgt-tcattgaatttctaggagtaatagatttgtgacccaggtttaattagtgtttcttttatgttgcggttttgtt 227  Q
    |||||||||  ||||||||||| | | |||||||||||||| ||||| ||| ||||||||| | ||||| ||| ||||||| |||||||||||||| |||    
T  6267383 aaaaacatgccattctataaaaatttctcattgaatttctatgagtactaggtttgtgacctaagtttagttaatgtttctcttatgttgcggtttggtt 6267482  T
Q  228 tggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatccgaatacatctgaaccaaat 318  Q
    |||||||          ||||||||||| |||||||  |||| |||||||||||| ||||||||| ||||  |||||||||||||||||||    
T  6267483 tggtttt----------taaaataaaaaccgcaaaccaaaccaaaccatgcggttgagtaaaaatgtgatatgaatacatctgaaccaaat 6267563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 15837789 - 15837695
Alignment:
Q  19 caaaagtgcaattatgattaaattaaagcacataaatatcattttaaaatcaaaagtatagnnnnnnncttaacaagaggaacaatatgtcttagt 114  Q
    |||||||| || ||| |||||||||||||| |||||||  ||||||||||||| ||| |||       ||||||||||||||||||||||||||||    
T  15837789 caaaagtgaaagtataattaaattaaagcatataaatacaattttaaaatcaatagtgtag-aaaaaacttaacaagaggaacaatatgtcttagt 15837695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 193 - 320
Target Start/End: Original strand, 8064932 - 8065060
Alignment:
Q  193 tttaattagtgtttctt-ttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaa 291  Q
    |||||||||||||| || ||||||||||||||  ||| ||||  |||||||  ||||||||||| | ||||| ||||| | |||||  ||| ||||||||    
T  8064932 tttaattagtgttttttcttatgttgcggtttgatttagtttggttcggtttgtaaaataaaaaccacaaaccgaaccaacccatgttgttgagtaaaaa 8065031  T
Q  292 tatgatccgaatacatctgaaccaaatgc 320  Q
      |||||| ||||||||  ||||||||||    
T  8065032 agtgatcctaatacatcaaaaccaaatgc 8065060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 320
Target Start/End: Complemental strand, 15837294 - 15837210
Alignment:
Q  236 ttcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatccgaatacatctgaaccaaatgc 320  Q
    ||||||| |||||||||||| | |||||  |||| ||||||| |||| || ||||||||||||| ||| |||| |||||||||||    
T  15837294 ttcggttgctaaaataaaaaccacaaaccaaaccgaaccatgtggttaaggaaaaatatgatccaaattcatccgaaccaaatgc 15837210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 225 - 320
Target Start/End: Original strand, 9686520 - 9686615
Alignment:
Q  225 gtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatccgaatacatctgaaccaaatgc 320  Q
    |||||||||  |||||||  |||||| |||| ||||| | ||| | |||||||||||| |||||||| ||||| |||||||||| ||| |||||||    
T  9686520 gtttggtttggttcggttggtaaaatcaaaaccgcaatccgaatcaaaccatgcggttgagtaaaaaaatgattcgaatacatccgaatcaaatgc 9686615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 255
Target Start/End: Original strand, 28611091 - 28611233
Alignment:
Q  120 aaatggagaaaaaa-catgttattctataaaattgttcattgaatttctaggagtaatagatttg-tgacccaggtttaattagtgtttcttttat---- 213  Q
    |||||||||||||| ||||| || ||||||||||  ||||||||||||||  | || ||| || | ||||  | ||||||||||||||||| ||||        
T  28611091 aaatggagaaaaaaacatgtcatcctataaaatttctcattgaatttctataattattaggttggatgacataagtttaattagtgtttctcttatgtta 28611190  T
Q  214 -gttgcggttttgtttggttttattcggttactaaaataaaaa 255  Q
     |||||||||||||| || || |||||||| ||||||||||||    
T  28611191 tgttgcggttttgttcggattaattcggttgctaaaataaaaa 28611233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 239 - 320
Target Start/End: Original strand, 4577572 - 4577653
Alignment:
Q  239 ggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatccgaatacatctgaaccaaatgc 320  Q
    ||||| |||||||||||  |||||| ||||| |||| ||||||| ||||||||  |||||||||| ||||  ||||||||||    
T  4577572 ggttaataaaataaaaactgcaaaccgaaccaaaccttgcggttaagtaaaaaagtgatccgaattcatccaaaccaaatgc 4577653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 6267256 - 6267350
Alignment:
Q  19 caaaagtgcaattatgattaaattaaagcacataaatatcattttaaaatcaaaagtatagnnnnnnncttaacaagaggaacaatatgtcttag 113  Q
    ||||||||||| ||| ||||||||||| || ||||||   |||||||||||| ||| ||||       |||||||||||||||||||||| ||||    
T  6267256 caaaagtgcaaatataattaaattaaaccatataaatgcaattttaaaatcagaagcatagaaaaaaacttaacaagaggaacaatatgttttag 6267350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 245 - 317
Target Start/End: Original strand, 29049027 - 29049099
Alignment:
Q  245 taaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatccgaatacatctgaaccaaa 317  Q
    |||||| |||| |||||||  |||| |||||||||||| |||||||| ||||||| |||||||| ||| ||||    
T  29049027 taaaatcaaaaccgcaaaccaaaccaaaccatgcggttgagtaaaaaaatgatccaaatacatccgaatcaaa 29049099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 291
Target Start/End: Complemental strand, 892050 - 891883
Alignment:
Q  125 gagaaaaaacatgttattctataaaattgttcattgaatttctaggagtaatag-atttgtgacccaggtttaattagtgtttcttttatgttgcggttt 223  Q
    |||||||||||||| ||| ||||||| | | |||||| ||||||  |||| | | ||  |||||  || ||||||||  |||| | |||| |||||||||    
T  892050 gagaaaaaacatgtcattttataaaagtttccattgagtttctataagtattggtataggtgacatagatttaattaaagtttttcttattttgcggttt 891951  T
Q  224 tgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaa 291  Q
     ||||| |||  |||||||  |||||| |||| |||||||  |||| |||||||||||| ||||||||    
T  891950 cgtttgatttggttcggttcgtaaaatgaaaagcgcaaaccaaaccaaaccatgcggtttagtaaaaa 891883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 316
Target Start/End: Complemental strand, 7169686 - 7169605
Alignment:
Q  236 ttcggttactaaaataaaaatcgcaaacagaacctaacca-tgcggttcagtaaaaatatgatccgaatacatctgaaccaa 316  Q
    |||||||  |||||| ||||  |||||| ||||| ||||| ||||||| | |||||| |||||||||||||||| |||||||    
T  7169686 ttcggttggtaaaatcaaaactgcaaaccgaaccaaaccaatgcggttgattaaaaaaatgatccgaatacatccgaaccaa 7169605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 9e-28; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 35 - 308
Target Start/End: Original strand, 20038762 - 20039034
Alignment:
Q  35 attaaattaaagcacataaatatcattttaaaatcaaaagtatagnnnnnnncttaacaagaggaacaatatgtcttagtacaaaaaatggagaaaaaac 134  Q
    ||||||||| |||||||||||   |||||||||||||||| ||||       |||||||||| || ||| ||| ||||||| ||||||  ||||||||||    
T  20038762 attaaattagagcacataaatgcaattttaaaatcaaaagcatagaaaaaa-cttaacaagaagagcaacatgccttagtaaaaaaaa--gagaaaaaac 20038858  T
Q  135 atgttattctataaaattgttcattgaatttctaggagtaatagatttgtgacccaggtttaattagtgtttcttttatgttgcggttttgtttggtttt 234  Q
    |||| ||||| |||||||  |||||||||||||| ||||| ||| ||||||||| | |||||   | || || | |||||||||||||| ||| |||||     
T  20038859 atgtcattctttaaaatttctcattgaatttctacgagtattaggtttgtgacctatgttta---aatgcttatcttatgttgcggtttggttcggtttg 20038955  T
Q  235 attcggttactaaaataaaaatcgcaaacagaacc-----taaccatgcggttcagtaaaaatatgatccgaatacatc 308  Q
    |||| ||| ||||||| |||| |||||||  ||||      |||||||||||| ||||||||||| |||| ||||||||    
T  20038956 attcagttgctaaaattaaaaccgcaaaccaaaccaaactaaaccatgcggttgagtaaaaatataatcctaatacatc 20039034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 193 - 320
Target Start/End: Complemental strand, 46253083 - 46252956
Alignment:
Q  193 tttaattagtgtttcttttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaat 292  Q
    |||||||||||||| | |||| ||||||||| |||||||||  |||||||| |||||| |||| ||||||| ||||| |||||| ||||| | ||||||     
T  46253083 tttaattagtgtttttcttatattgcggtttggtttggtttgcttcggttagtaaaattaaaaccgcaaaccgaaccaaaccatacggttgaataaaaaa 46252984  T
Q  293 atgatccgaatacatctgaaccaaatgc 320  Q
     ||||| ||||||||| ||| |||||||    
T  46252983 ttgatctgaatacatccgaatcaaatgc 46252956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 192 - 320
Target Start/End: Complemental strand, 51662011 - 51661883
Alignment:
Q  192 gtttaattagtgtttcttttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaa 291  Q
    ||||||||||| ||| | |||||||||||||| |||||| ||  |||||||  ||||| ||||| |||||||  |||| |||||||||||| | ||||||    
T  51662011 gtttaattagtctttttattatgttgcggtttggtttgggttggttcggttggtaaaacaaaaaccgcaaaccaaaccaaaccatgcggttgaataaaaa 51661912  T
Q  292 tatgatccgaatacatctgaaccaaatgc 320  Q
      ||||||||||||||| ||| |||||||    
T  51661911 agtgatccgaatacatccgaatcaaatgc 51661883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 192 - 320
Target Start/End: Original strand, 51194690 - 51194820
Alignment:
Q  192 gtttaattagtgtttcttttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagt--aaa 289  Q
    ||||||||||||||||| |||||||||||||| ||| |||||  ||||||| |||||||||||| || ||||  |||| |||||| |  || |||  |||    
T  51194690 gtttaattagtgtttctcttatgttgcggtttagttcggtttggttcggttgctaaaataaaaaccgtaaactaaaccaaaccatacaattgagtaaaaa 51194789  T
Q  290 aatatgatccgaatacatctgaaccaaatgc 320  Q
    || |||||||||||||||| ||| |||||||    
T  51194790 aaaatgatccgaatacatccgaatcaaatgc 51194820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 128 - 319
Target Start/End: Original strand, 40484378 - 40484559
Alignment:
Q  128 aaaaaacatgttattctataaaattgttcattgaatttctaggagtaatagatttgtgacccaggtttaattagtgtttcttttatgttgcggttttgtt 227  Q
    |||||| |||| |||||||||||||  || ||||||||| | ||||| ||| ||||||||  | |||| |||||||||| | ||||||| | |||| |||    
T  40484378 aaaaaaaatgtcattctataaaatttctctttgaatttccaagagtactaggtttgtgacttaagttttattagtgtttttcttatgttacagtttggtt 40484477  T
Q  228 tggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatccgaatacatctgaaccaaatg 319  Q
    |||||           ||||||| |||||||||||| |||   |||||||||||| |||||||||||||| ||||| |||| || |||||||    
T  40484478 tggttg----------ctaaaatgaaaatcgcaaactgaaatgaaccatgcggttgagtaaaaatatgattcgaatgcatccgagccaaatg 40484559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 210 - 298
Target Start/End: Complemental strand, 42362840 - 42362752
Alignment:
Q  210 ttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatc 298  Q
    |||||||||||||| ||||||||| |||| |||  |||||| |||| |||||||  |||| |||||||||||| |||||||| ||||||    
T  42362840 ttatgttgcggtttggtttggtttgattcagttggtaaaatgaaaaccgcaaaccaaaccaaaccatgcggttgagtaaaaaaatgatc 42362752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 193 - 308
Target Start/End: Complemental strand, 2565939 - 2565824
Alignment:
Q  193 tttaattagtgtttcttttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaat 292  Q
    ||||||||| |||| | |||| ||||||||| |||||||||  || ||||  |||||| |||| ||||||| ||||| |||||| | ||| ||||||||     
T  2565939 tttaattagagtttttcttatattgcggtttggtttggtttgttttggttggtaaaatcaaaaccgcaaaccgaaccaaaccatccagttgagtaaaaaa 2565840  T
Q  293 atgatccgaatacatc 308  Q
    || |||||||||||||    
T  2565839 ataatccgaatacatc 2565824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 236 - 318
Target Start/End: Original strand, 4280780 - 4280861
Alignment:
Q  236 ttcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatccgaatacatctgaaccaaat 318  Q
    |||||||  ||||||||||| ||||||| ||||| |||||||||||| |||||||| |||||| |||||||||  ||||||||    
T  4280780 ttcggttggtaaaataaaaaccgcaaaccgaaccaaaccatgcggttgagtaaaaa-atgatctgaatacatccaaaccaaat 4280861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 239 - 320
Target Start/End: Complemental strand, 45914808 - 45914727
Alignment:
Q  239 ggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatccgaatacatctgaaccaaatgc 320  Q
    ||||| |||||| |||| |||||||  |||| |||||||||||| |||||||   ||||||||||||||| |||||||||||    
T  45914808 ggttagtaaaatcaaaaccgcaaaccaaaccaaaccatgcggttgagtaaaatattgatccgaatacatccgaaccaaatgc 45914727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 210 - 318
Target Start/End: Complemental strand, 51660622 - 51660519
Alignment:
Q  210 ttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatccgaatacatct 309  Q
    |||||||||||||| ||||||||| |||| |||  ||||||||||| ||||     |||| ||||||| |||  |||||||| |||||| ||||||||||    
T  51660622 ttatgttgcggtttggtttggtttgattcagttggtaaaataaaaaccgca-----aaccaaaccatgtggtatagtaaaaaaatgatcagaatacatct 51660528  T
Q  310 gaaccaaat 318  Q
     ||||||||    
T  51660527 aaaccaaat 51660519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 193 - 320
Target Start/End: Complemental strand, 22255935 - 22255809
Alignment:
Q  193 tttaattagtgtttcttttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaat 292  Q
    |||||||||||||| | |||| | ||||||| |||||| |||  ||||||  |||||| |||| ||||||| ||||| ||| ||||| || ||||||||     
T  22255935 tttaattagtgtttttcttatatcgcggtttggtttgg-tttggtcggttgataaaatcaaaaccgcaaaccgaaccaaactatgcgattgagtaaaaaa 22255837  T
Q  293 atgatccgaatacatctgaaccaaatgc 320  Q
    ||||| | ||||||| ||||| ||||||    
T  22255836 atgattcaaatacatttgaactaaatgc 22255809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 219
Target Start/End: Complemental strand, 32073212 - 32073025
Alignment:
Q  35 attaaattaaagcacataaatatcattttaaaatcaaaagtatagnnnnnnncttaacaagaggaacaatatgtcttagtacaaaaaat------ggaga 128  Q
    |||||||||||||| |||||||  ||||||||||||||||| |||       ||||||| ||||||||  | ||||||||  |||||||       ||||    
T  32073212 attaaattaaagcatataaatacaattttaaaatcaaaagtgtag-aaaaaacttaacatgaggaaca--aggtcttagttaaaaaaataaaaagagaga 32073116  T
Q  129 aaaaacatgttattctataaaattgttcattgaatttctaggagtaatagatttgtgacccaggtttaattagtgtttcttttatgttgcg 219  Q
    ||||| |||| |||||||||||   ||||||||||||||| ||||| ||| |||||| || |  |||||||||||||| | || |||||||    
T  32073115 aaaaatatgtcattctataaaaaatttcattgaatttctatgagtactaggtttgtgtcctaaatttaattagtgtttttcttgtgttgcg 32073025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 318
Target Start/End: Complemental strand, 38651663 - 38651553
Alignment:
Q  208 ttttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatccgaatacat 307  Q
    |||||||||||||||| |||||||||  ||| |||  |||||| |||| |||||||  || | |||||||||||| || || || |||||| || |||||    
T  38651663 ttttatgttgcggtttggtttggtttggttcagttggtaaaatgaaaaccgcaaaccaaatcaaaccatgcggttgagcaagaaaatgatcggattacat 38651564  T
Q  308 ctgaaccaaat 318  Q
    | |||||||||    
T  38651563 ccgaaccaaat 38651553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 320
Target Start/End: Complemental strand, 34185483 - 34185408
Alignment:
Q  245 taaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatccgaatacatctgaaccaaatgc 320  Q
    |||||||||||  ||||||  |||| |||||||||||| ||| |||| |||||| |||| |||| |||||||||||    
T  34185483 taaaataaaaagtgcaaaccaaaccgaaccatgcggttgagtcaaaaaatgatctgaatgcatccgaaccaaatgc 34185408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 45629674 - 45629736
Alignment:
Q  245 taaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatccgaatacatc 308  Q
    |||||||||||  |||||  ||||| |||||||||||| ||||||||| |||||||||||||||    
T  45629674 taaaataaaaactgcaaatcgaaccaaaccatgcggttgagtaaaaat-tgatccgaatacatc 45629736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 167
Target Start/End: Original strand, 21238520 - 21238561
Alignment:
Q  126 agaaaaaacatgttattctataaaattgttcattgaatttct 167  Q
    ||||||||||||||||||||||||| | || |||||||||||    
T  21238520 agaaaaaacatgttattctataaaaattttaattgaatttct 21238561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 6e-26; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 19 - 320
Target Start/End: Complemental strand, 10778179 - 10777887
Alignment:
Q  19 caaaagtgcaattatgattaaattaaagcacataaatatcattttaaaatcaaaagtatagnnnnnnncttaacaagaggaacaatatgtcttagt--ac 116  Q
    ||||||||||| ||  ||||||||||||||||||||||  |||||||||||||||| ||||        ||||||  || || |||||||||| ||  |     
T  10778179 caaaagtgcaagtacaattaaattaaagcacataaatacaattttaaaatcaaaagcatagaaaaaat-ttaacacaagaaataatatgtcttggtcaaa 10778081  T
Q  117 aaaaaatggagaaaaaacatgttattctataaaattgttcattgaatttctaggagtaatagatttgtgacccaggtttaattagtgtttcttttatgtt 216  Q
    ||||||  |||||||||||||| ||||||||| |||  | ||||| | | |||||||| ||| ||||||| | | ||||||||||||||| | |||||||    
T  10778080 aaaaaaaagagaaaaaacatgtcattctataagatttcttattgactatttaggagtactaggtttgtgatctaagtttaattagtgtttatcttatgtt 10777981  T
Q  217 gcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatccgaatacatctgaaccaa 316  Q
    | ||||| |||          ||||| |||||||||||| ||||| | |||    ||||||||||| ||||||||||| ||||||||||||||||| |||    
T  10777980 gtggtttggtt----------cggttgctaaaataaaaaccgcaagccgaattgtaccatgcggttgagtaaaaatattatccgaatacatctgaatcaa 10777891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 193 - 320
Target Start/End: Original strand, 20986844 - 20986971
Alignment:
Q  193 tttaattagtgtttcttttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaat 292  Q
    |||||||||||||| | |||| ||||||||| |||||||||  |||||||| |||||| |||||| |||||  |||| ||| |||||||| ||||||||     
T  20986844 tttaattagtgtttttcttatattgcggtttggtttggtttggttcggttagtaaaatcaaaatcccaaaccaaaccaaacaatgcggttgagtaaaaaa 20986943  T
Q  293 atgatccgaatacatctgaaccaaatgc 320  Q
     ||||||||||||||| |||||||||||    
T  20986944 ttgatccgaatacatccgaaccaaatgc 20986971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 125 - 320
Target Start/End: Complemental strand, 54273630 - 54273444
Alignment:
Q  125 gagaaaaaacatgttattctataaaattgttcattgaatttctaggagtaatagatttgtgacccaggtttaattagtgtttcttttatgttgcggtttt 224  Q
    ||||||||| |||| |||||||||||||  |||||||||||||  ||||| |||  | |||| | | ||||| ||||||||||| ||||||||||||||     
T  54273630 gagaaaaaatatgtcattctataaaatttatcattgaatttctctgagtactaggctggtgaactaagtttagttagtgtttctcttatgttgcggtttg 54273531  T
Q  225 gtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagt-aaaaatatgatccgaatacatctgaaccaaatgc 320  Q
    |||          ||||| |||||||||||| |||||||  |||| || ||||||||| ||| ||||| |||||||||||||||| |||||||||||    
T  54273530 gtt----------cggttgctaaaataaaaaccgcaaaccaaaccgaatcatgcggttgagtaaaaaaaatgatccgaatacatccgaaccaaatgc 54273444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 192 - 292
Target Start/End: Original strand, 41260553 - 41260653
Alignment:
Q  192 gtttaattagtgtttcttttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaa 291  Q
    ||||||||||||||| | ||||||||| |||| ||||||||| ||||||||  ||||||||||| | ||||  ||||| |||||||||||| ||||||||    
T  41260553 gtttaattagtgtttttcttatgttgcagtttggtttggtttgattcggttggtaaaataaaaaccacaaattgaaccgaaccatgcggttgagtaaaaa 41260652  T
Q  292 t 292  Q
    |    
T  41260653 t 41260653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 197 - 320
Target Start/End: Original strand, 8485127 - 8485250
Alignment:
Q  197 attagtgtttcttttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatga 296  Q
    |||||||||| | |||| ||||||||| |||||||||  |||||||  |||||| |||| ||||||| | ||| |||||||||||| |||||| | ||||    
T  8485127 attagtgtttttcttatattgcggtttggtttggtttagttcggttggtaaaatcaaaaccgcaaaccggaccaaaccatgcggttgagtaaataaatga 8485226  T
Q  297 tccgaatacatctgaaccaaatgc 320  Q
    | |||||||||| ||| |||||||    
T  8485227 ttcgaatacatccgaatcaaatgc 8485250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 210 - 320
Target Start/End: Original strand, 3999216 - 3999326
Alignment:
Q  210 ttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatccgaatacatct 309  Q
    |||||||||||||| ||||||||| |||| |||  ||||||||||| ||||||| ||||| ||||||| |||| ||||| ||  |||| | |||||||||    
T  3999216 ttatgttgcggtttggtttggtttaattcagttggtaaaataaaaaccgcaaaccgaaccaaaccatgtggttgagtaagaaagtgattcaaatacatct 3999315  T
Q  310 gaaccaaatgc 320  Q
     ||||||||||    
T  3999316 taaccaaatgc 3999326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 210 - 308
Target Start/End: Original strand, 48338800 - 48338898
Alignment:
Q  210 ttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatccgaatacatc 308  Q
    ||||||||||||||||||||||||  |||||||  |||||| |||| |||||||  |||| |||||||||||| || |||||  |||||||||||||||    
T  48338800 ttatgttgcggttttgtttggtttggttcggttggtaaaatgaaaaccgcaaaccaaaccaaaccatgcggttgagcaaaaaagtgatccgaatacatc 48338898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 193 - 308
Target Start/End: Original strand, 21069503 - 21069617
Alignment:
Q  193 tttaattagtgtttcttttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaat 292  Q
    |||||||||||||| | |||| | ||||||| |||||||||  |||||||  |||||| |||| ||||||| ||||  |||||||||||| ||||||||     
T  21069503 tttaattagtgtttttcttatatcgcggtttggtttggtttggttcggttggtaaaatcaaaa-cgcaaaccgaacaaaaccatgcggttgagtaaaaaa 21069601  T
Q  293 atgatccgaatacatc 308  Q
     |||||||||||||||    
T  21069602 ttgatccgaatacatc 21069617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 193 - 308
Target Start/End: Complemental strand, 23449623 - 23449508
Alignment:
Q  193 tttaattagtgtttcttttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaat 292  Q
    |||||||| ||||| | |||| ||||| |||  ||||||||  |||||||  |||||| ||||  |||||| ||||| |||||||||||| ||||||||     
T  23449623 tttaattaatgtttttcttatattgcgatttgatttggtttggttcggttggtaaaatcaaaactgcaaactgaaccaaaccatgcggttgagtaaaaaa 23449524  T
Q  293 atgatccgaatacatc 308  Q
    ||||||||||||||||    
T  23449523 atgatccgaatacatc 23449508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 193 - 320
Target Start/End: Original strand, 28148209 - 28148336
Alignment:
Q  193 tttaattagtgtttcttttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaat 292  Q
    |||||||||||||| | |||| |||| ||||  ||||||||  |||||||| |||||| |||| ||||||| ||||  || |||||||||  |||||||     
T  28148209 tttaattagtgtttttcttatattgcagtttgatttggtttggttcggttagtaaaatcaaaaccgcaaaccgaacaaaatcatgcggttgcgtaaaaaa 28148308  T
Q  293 atgatccgaatacatctgaaccaaatgc 320  Q
    |||||| ||||||||| |||| ||||||    
T  28148309 atgatctgaatacatccgaactaaatgc 28148336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 192 - 302
Target Start/End: Complemental strand, 48602148 - 48602039
Alignment:
Q  192 gtttaattagtgtttcttttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaa 291  Q
    ||||||||| ||||| |||||||||| ||||| |||||| ||  |||||||  ||| |||||||| |||||| ||||| |||||||||||| ||||||||    
T  48602148 gtttaattaatgttttttttatgttgtggtttggtttggattggttcggttggtaagataaaaat-gcaaaccgaaccgaaccatgcggttgagtaaaaa 48602050  T
Q  292 tatgatccgaa 302  Q
     ||||| ||||    
T  48602049 aatgattcgaa 48602039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 195 - 320
Target Start/End: Original strand, 41325842 - 41325967
Alignment:
Q  195 taattagtgtttcttttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatat 294  Q
    |||||||||||| | |||| ||||||||| |||||||||  |||||||  |||||| ||||  |||||| ||||| |||||||| ||| |||||| |  |    
T  41325842 taattagtgtttttcttatattgcggtttggtttggtttggttcggttggtaaaatcaaaactgcaaaccgaaccaaaccatgcagttgagtaaataatt 41325941  T
Q  295 gatccgaatacatctgaaccaaatgc 320  Q
    ||||| |||||||| ||| |||||||    
T  41325942 gatccaaatacatccgaatcaaatgc 41325967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 193 - 320
Target Start/End: Complemental strand, 48653543 - 48653415
Alignment:
Q  193 tttaattagtgtttctt-ttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaa 291  Q
    ||||||||| |||| || |||| ||||||||| |||||||||  |||| ||   ||||| |||||| ||||| ||||| |||||||| ||| ||||||||    
T  48653543 tttaattagcgttttttcttatattgcggtttggtttggtttggttcgattgacaaaatcaaaatcacaaaccgaaccaaaccatgcagttgagtaaaaa 48653444  T
Q  292 tatgatccgaatacatctgaaccaaatgc 320  Q
     ||||| | |||||||| |||||||||||    
T  48653443 aatgattcaaatacatccgaaccaaatgc 48653415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 193 - 320
Target Start/End: Complemental strand, 48293068 - 48292941
Alignment:
Q  193 tttaattagtgtttcttttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaat 292  Q
    |||||||||||||| | |||| ||||||||| |||||||||  || |||   |||||| |||| |||||||  |||| ||||||| |||| || |||||     
T  48293068 tttaattagtgtttttcttatcttgcggtttggtttggtttgtttgggtaggtaaaatgaaaaccgcaaaccaaaccaaaccatgtggttgaggaaaaaa 48292969  T
Q  293 atgatccgaatacatctgaaccaaatgc 320  Q
     |||||||||||||||  ||||||||||    
T  48292968 gtgatccgaatacatccaaaccaaatgc 48292941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 319
Target Start/End: Original strand, 45983794 - 45983902
Alignment:
Q  211 tatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatccgaatacatctg 310  Q
    ||||||||||||| ||||||||| ||||||||  |||||| |||| |||||||  |||| ||||||| |||| || || || || || ||| |||||| |    
T  45983794 tatgttgcggtttggtttggtttgattcggttggtaaaatgaaaaccgcaaaccaaaccaaaccatgtggttgagcaagaaaataattcgattacatccg 45983893  T
Q  311 aaccaaatg 319  Q
    |||||||||    
T  45983894 aaccaaatg 45983902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 225 - 320
Target Start/End: Original strand, 15724310 - 15724405
Alignment:
Q  225 gtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatccgaatacatctgaaccaaatgc 320  Q
    |||||||||  |||||||  |||||||||||| ||||||  |||| |||||||||||| || || || ||||| ||| |||||| |||||||||||    
T  15724310 gtttggtttggttcggttggtaaaataaaaattgcaaaccaaaccaaaccatgcggttgagcaagaaaatgatacgattacatccgaaccaaatgc 15724405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 319
Target Start/End: Original strand, 46471912 - 46471986
Alignment:
Q  245 taaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatccgaatacatctgaaccaaatg 319  Q
    |||||| |||| |||||||  |||| || ||||||||| ||||||||  ||||||||||||||| ||||||||||    
T  46471912 taaaatgaaaaccgcaaaccaaaccaaatcatgcggttgagtaaaaaagtgatccgaatacatccgaaccaaatg 46471986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 219 - 320
Target Start/End: Complemental strand, 1564669 - 1564568
Alignment:
Q  219 ggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatccgaatacatctgaaccaaat 318  Q
    ||||| |||||||||  ||| |||  |||||| |||| ||||||| ||||| |||||||||||| | |||||  || |||| |||||||| |||||||||    
T  1564669 ggtttggtttggtttggttcagttggtaaaatcaaaaccgcaaaccgaaccaaaccatgcggttaactaaaagaattatcccaatacatccgaaccaaat 1564570  T
Q  319 gc 320  Q
    ||    
T  1564569 gc 1564568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 193 - 317
Target Start/End: Original strand, 29233194 - 29233313
Alignment:
Q  193 tttaattagtgtttcttttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaat 292  Q
    |||||||||||||| | |||| ||| ||||||||||||||     |||||  |||||| |||| | ||||| ||||| |||||||||||| || | |||     
T  29233194 tttaattagtgtttttcttatattggggttttgtttggtt-----cggttggtaaaattaaaaccacaaaccgaaccaaaccatgcggttgagaagaaaa 29233288  T
Q  293 atgatccgaatacatctgaaccaaa 317  Q
     |||||||||||||||  |||||||    
T  29233289 ttgatccgaatacatccaaaccaaa 29233313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 320
Target Start/End: Complemental strand, 15986155 - 15986092
Alignment:
Q  257 cgcaaacagaacctaaccatgcggttcagtaaaaatatgatccgaatacatctgaaccaaatgc 320  Q
    ||||||| ||||| |||||||||||| | ||||||  ||||||||||||||| ||| |||||||    
T  15986155 cgcaaactgaaccaaaccatgcggttgaataaaaaattgatccgaatacatccgaatcaaatgc 15986092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 308
Target Start/End: Complemental strand, 18536297 - 18536182
Alignment:
Q  193 tttaattagtgtttcttttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaat 292  Q
    |||||||||||||| | |||||||||||||| ||||| |||  |||||||  |||||| ||||   |||||  || | ||||||| |||| ||||||||     
T  18536297 tttaattagtgtttttattatgttgcggtttggtttgatttggttcggtttgtaaaatgaaaactacaaaccaaagcaaaccatgaggttgagtaaaaaa 18536198  T
Q  293 atgatccgaatacatc 308  Q
     | |||||||||||||    
T  18536197 gttatccgaatacatc 18536182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 320
Target Start/End: Complemental strand, 23119912 - 23119817
Alignment:
Q  225 gtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatccgaatacatctgaaccaaatgc 320  Q
    |||||||||  |||||||  |||||| |||||||||||| ||||| || ||||||||| || || || |||||| || ||||||  ||||||||||    
T  23119912 gtttggtttagttcggttggtaaaatgaaaatcgcaaaccgaaccaaatcatgcggttgagcaagaaaatgatctgattacatcctaaccaaatgc 23119817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 210 - 320
Target Start/End: Complemental strand, 18881674 - 18881564
Alignment:
Q  210 ttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatccgaatacatct 309  Q
    |||||||||||||| ||| |||||  ||| |||  |||||||||||||||||||  |||| ||| |  ||||| |||| |||  |||| ||||||||||     
T  18881674 ttatgttgcggtttggttcggtttagttcagttgataaaataaaaatcgcaaaccaaaccaaactacacggttgagtataaaagtgattcgaatacatcc 18881575  T
Q  310 gaaccaaatgc 320  Q
     ||||||||||    
T  18881574 aaaccaaatgc 18881564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 266 - 320
Target Start/End: Original strand, 29233307 - 29233361
Alignment:
Q  266 aacctaaccatgcggttcagtaaaaatatgatccgaatacatctgaaccaaatgc 320  Q
    |||| |||||||||||| |||| |||  |||||||||||||||| ||||||||||    
T  29233307 aaccaaaccatgcggttgagtagaaaattgatccgaatacatctaaaccaaatgc 29233361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 319
Target Start/End: Original strand, 35014734 - 35014843
Alignment:
Q  210 ttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatccgaatacatct 309  Q
    |||||||||||||| ||||||  |  ||| |||  ||| ||||||| ||||||  || || |||||||||||| |||||||| ||| || |||||||||     
T  35014734 ttatgttgcggtttggtttggactggttcagttgataagataaaaaccgcaaatcgacccaaaccatgcggttgagtaaaaaaatggtcggaatacatcc 35014833  T
Q  310 gaaccaaatg 319  Q
    | ||||||||    
T  35014834 ggaccaaatg 35014843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 320
Target Start/End: Original strand, 45226805 - 45226913
Alignment:
Q  212 atgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatccgaatacatctga 311  Q
    |||||||||||| |||| ||||  ||| ||   |||||||||||||||||||  |||| || |||  |||| |||||| | |||||  ||||||||||||    
T  45226805 atgttgcggtttggtttagtttggttcagtgggtaaaataaaaatcgcaaactaaaccaaatcatatggttgagtaaagaaatgatatgaatacatctga 45226904  T
Q  312 accaaatgc 320  Q
    | |||||||    
T  45226905 atcaaatgc 45226913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 193 - 318
Target Start/End: Original strand, 29628658 - 29628783
Alignment:
Q  193 tttaattagtgtttcttttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaat 292  Q
    |||||||||||||| | |||||||||||||| |||||||||  |||||||  |||||| ||||||||||||  |||| |||||||||||| || |||||     
T  29628658 tttaattagtgtttttcttatgttgcggtttggtttggtttggttcggttggtaaaatgaaaatcgcaaaccaaaccaaaccatgcggttaaggaaaaaa 29628757  T
Q  293 atgatccgaatacatctgaaccaaat 318  Q
     |||||||||||||||  ||||||||    
T  29628758 gtgatccgaatacatccaaaccaaat 29628783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 193 - 313
Target Start/End: Complemental strand, 31287415 - 31287295
Alignment:
Q  193 tttaattagtgtttcttttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaat 292  Q
    |||||||||||||| | |||| |||||||||  ||||||||  |||||||  |||||| |||| ||||||| ||||| |||||||||||| ||||||||     
T  31287415 tttaattagtgtttttcttatattgcggtttgatttggtttggttcggttggtaaaattaaaaccgcaaaccgaaccaaaccatgcggttgagtaaaaaa 31287316  T
Q  293 atgatccgaatacatctgaac 313  Q
    |||||| ||||||||| ||||    
T  31287315 atgatctgaatacatccgaac 31287295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 193 - 318
Target Start/End: Complemental strand, 524506 - 524381
Alignment:
Q  193 tttaattagtgtttcttttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaat 292  Q
    |||||||||  ||| |||||||||||||||| |||||||||  |||||||  |||||| |||| |||||||  |||| |||||||||||| || |||||     
T  524506 tttaattagaattttttttatgttgcggtttggtttggtttggttcggttggtaaaatgaaaaccgcaaaccaaaccaaaccatgcggttgagcaaaaaa 524407  T
Q  293 atgatccgaatacatctgaaccaaat 318  Q
     |||||||||||||||  ||||||||    
T  524406 gtgatccgaatacatccaaaccaaat 524381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 193 - 308
Target Start/End: Original strand, 40849303 - 40849418
Alignment:
Q  193 tttaattagtgtttcttttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaat 292  Q
    ||||||||| |||  | |||||||||||||| |||||||||  |||||||  |||||| |||| |||||||  |||| |||||||||||| ||||||||     
T  40849303 tttaattagagttgttcttatgttgcggtttggtttggtttggttcggttggtaaaatgaaaaccgcaaaccaaaccaaaccatgcggttgagtaaaaaa 40849402  T
Q  293 atgatccgaatacatc 308  Q
     |||||||||||||||    
T  40849403 gtgatccgaatacatc 40849418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 193 - 320
Target Start/End: Original strand, 1812924 - 1813046
Alignment:
Q  193 tttaattagtgtttcttttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaat 292  Q
    |||||||||||||| |||||| ||||||||| |||  ||||     ||||  |||||| |||| ||||||| ||||| ||| |||||||| |||||||      
T  1812924 tttaattagtgttttttttatattgcggtttggttccgttt-----ggttggtaaaatcaaaaccgcaaactgaaccaaactatgcggttgagtaaaata 1813018  T
Q  293 atgatccgaatacatctgaaccaaatgc 320  Q
    |||||||||||| ||| |||||||||||    
T  1813019 atgatccgaatatatccgaaccaaatgc 1813046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 193 - 308
Target Start/End: Original strand, 11399567 - 11399681
Alignment:
Q  193 tttaattagtgtttcttttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaat 292  Q
    |||||||||||||| | ||||| |||||||| ||||| |||  |||||||| |||||| |||| |||||||  || | |||||||||||| | ||||||     
T  11399567 tttaattagtgtttttattatgctgcggtttggtttg-tttggttcggttagtaaaatgaaaaccgcaaaccaaatcaaaccatgcggttgactaaaaaa 11399665  T
Q  293 atgatccgaatacatc 308  Q
     |||||||||||||||    
T  11399666 gtgatccgaatacatc 11399681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 193 - 320
Target Start/End: Complemental strand, 8568187 - 8568061
Alignment:
Q  193 tttaattagtgtttcttttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaat 292  Q
    |||||||||||||| | |||| ||||||||| |||||||||  ||||| |  ||||||  ||| |||||||  | |  |||||| ||||| || |||||     
T  8568187 tttaattagtgtttttcttatattgcggtttggtttggtttggttcggctggtaaaatttaaaccgcaaaccaagcaaaaccattcggttgagaaaaaa- 8568089  T
Q  293 atgatccgaatacatctgaaccaaatgc 320  Q
    |||||||||||||||| |||||||||||    
T  8568088 atgatccgaatacatccgaaccaaatgc 8568061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 318
Target Start/End: Complemental strand, 31011399 - 31011278
Alignment:
Q  192 gtttaattagtgtttcttttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaa 291  Q
    ||||||||||||||| | |||||||||||||| |||| ||||     ||||  ||||||||||| | ||||| | ||| ||||| |||||| ||||| ||    
T  31011399 gtttaattagtgtttttcttatgttgcggtttggtttcgttt-----ggttggtaaaataaaaacctcaaaccgcaccaaaccacgcggttgagtaagaa 31011305  T
Q  292 tatgatccgaatacatctgaaccaaat 318  Q
     | |||| ||||||||| |||||||||    
T  31011304 aacgatctgaatacatccgaaccaaat 31011278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 318
Target Start/End: Original strand, 33435507 - 33435551
Alignment:
Q  274 catgcggttcagtaaaaatatgatccgaatacatctgaaccaaat 318  Q
    ||||||||| ||||||||||||||| ||||||||||||| |||||    
T  33435507 catgcggttaagtaaaaatatgatctgaatacatctgaatcaaat 33435551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 308
Target Start/End: Original strand, 22298975 - 22299090
Alignment:
Q  193 tttaattagtgtttcttttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaat 292  Q
    |||||||||||||| | |||| || ||| || |||||||||  |||||||  |||||| |||| ||||||| ||||| || ||||| ||| ||| ||||     
T  22298975 tttaattagtgtttttcttatattacggattggtttggtttggttcggttggtaaaatcaaaaccgcaaaccgaaccaaatcatgctgttgagtgaaaaa 22299074  T
Q  293 atgatccgaatacatc 308  Q
    ||||| | ||||||||    
T  22299075 atgattctaatacatc 22299090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 291
Target Start/End: Complemental strand, 27214810 - 27214731
Alignment:
Q  212 atgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaa 291  Q
    ||||||| ||||  |||||||| ||| ||||  ||||||||||||||||||| ||||  ||||||| |||| ||||||||    
T  27214810 atgttgcagtttgatttggtttaatttggttcgtaaaataaaaatcgcaaaccgaactgaaccatgtggttgagtaaaaa 27214731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 193 - 319
Target Start/End: Complemental strand, 10338177 - 10338044
Alignment:
Q  193 tttaattagtgtttcttttatgttgcggtttt-----gtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagta 287  Q
    |||||||||||||| | |||| |||||||||      |||||||||  |||||||  |||||| |||| | ||||  ||||| |||||||||||| || |    
T  10338177 tttaattagtgtttttcttatattgcggtttgatttagtttggtttagttcggttggtaaaatcaaaaccacaaatcgaaccaaaccatgcggttgagca 10338078  T
Q  288 aaaata--tgatccgaatacatctgaaccaaatg 319  Q
    |||| |  ||||||||||||||| ||||||||||    
T  10338077 aaaaaaaatgatccgaatacatccgaaccaaatg 10338044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 193 - 291
Target Start/End: Complemental strand, 22700978 - 22700881
Alignment:
Q  193 tttaattagtgtttcttttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaa 291  Q
    |||||||| ||||| ||||||||||| |||| ||||| |||  |||  ||  ||||||||||||||||||| ||||| |||||| || || ||||||||    
T  22700978 tttaattattgttt-ttttatgttgcagtttggtttgatttggttctattggtaaaataaaaatcgcaaaccgaaccaaaccatacgattgagtaaaaa 22700881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 228 - 318
Target Start/End: Original strand, 26956312 - 26956401
Alignment:
Q  228 tggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatccgaatacatctgaaccaaat 318  Q
    |||||| ||||||||  ||||||||||| | ||||| || || ||||| |||||| ||||||||  |||| ||||||||||| ||||||||    
T  26956312 tggtttgattcggttggtaaaataaaaa-cacaaaccgatccaaaccacgcggttgagtaaaaaagtgattcgaatacatctaaaccaaat 26956401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 35495851 - 35495901
Alignment:
Q  192 gtttaattagtgtttcttttatgttgcggttttgtttggttttattcggtt 242  Q
    ||||||||||||||| | |||| ||||||||| ||||||||| ||||||||    
T  35495851 gtttaattagtgtttttcttatattgcggtttggtttggtttgattcggtt 35495901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 46147654 - 46147694
Alignment:
Q  193 tttaattagtgtttcttttatgttgcggttttgtttggttt 233  Q
    |||||||||||||| | |||||||||||||| |||||||||    
T  46147654 tttaattagtgtttttcttatgttgcggtttggtttggttt 46147694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 192 - 318
Target Start/End: Complemental strand, 40109185 - 40109059
Alignment:
Q  192 gtttaattagtgtttcttttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaa 291  Q
    ||||||||| ||||| | |||||||||||||||||||||||| | ||||||  |||||||||||||||||||  || | || ||| ||||| ||||||||    
T  40109185 gtttaattaatgtttttcttatgttgcggttttgtttggtttgactcggttgttaaaataaaaatcgcaaaccaaatcaaatcatacggttgagtaaaaa 40109086  T
Q  292 tatgatccgaatacatctgaaccaaat 318  Q
    | ||||  ||||||||| | |||||||    
T  40109085 tttgatatgaatacatccggaccaaat 40109059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 193 - 320
Target Start/End: Original strand, 25495537 - 25495663
Alignment:
Q  193 tttaattagtgtttcttttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaat 292  Q
    |||||||||| ||| | |||| ||||||||| |||||||||  |||||||  |||||| |||| ||||||  ||||| |||||||||||| ||||||||     
T  25495537 tttaattagtttttttcttatattgcggtttagtttggtttggttcggttggtaaaattaaaaccgcaaat-gaaccaaaccatgcggttgagtaaaaaa 25495635  T
Q  293 atgatccgaatacatctgaaccaaatgc 320  Q
    |||||| ||||| ||||||| |||||||    
T  25495636 atgatctgaatatatctgaatcaaatgc 25495663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 225 - 318
Target Start/End: Complemental strand, 28224470 - 28224377
Alignment:
Q  225 gtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatccgaatacatctgaaccaaat 318  Q
    |||||||||  |||||||  |||||| |||| |||||||  |||| ||| |||| ||| |||||||| ||||||||||||||||||||||||||    
T  28224470 gtttggtttggttcggttggtaaaatcaaaaccgcaaaccaaaccaaactatgcagttgagtaaaaaaatgatccgaatacatctgaaccaaat 28224377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 199 - 320
Target Start/End: Original strand, 36568157 - 36568278
Alignment:
Q  199 tagtgtttcttttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatc 298  Q
    |||||||| | |||| ||| ||||| | |||||||  |||||||  |||||| |||| ||||||| ||||| ||||||| |||| ||| ||||  |||||    
T  36568157 tagtgtttttcttatattgtggtttggattggtttggttcggttggtaaaatcaaaaccgcaaactgaaccaaaccatgtggttgagttaaaaattgatc 36568256  T
Q  299 cgaatacatctgaaccaaatgc 320  Q
     |||||||||||||||||||||    
T  36568257 tgaatacatctgaaccaaatgc 36568278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 210 - 305
Target Start/End: Original strand, 23623464 - 23623559
Alignment:
Q  210 ttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatccgaatac 305  Q
    |||||||||||||| |||||||||  |||||||  | |||| |||| |||||||  |||| |||||||||||| ||||||||  ||||||||||||    
T  23623464 ttatgttgcggtttggtttggtttggttcggtttgtcaaatgaaaaccgcaaaccaaaccaaaccatgcggttgagtaaaaaagtgatccgaatac 23623559  T

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Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 193 - 320
Target Start/End: Original strand, 41455318 - 41455445
Alignment:
Q  193 tttaattagtgtttcttttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaat 292  Q
    |||||||||||||| | |||| ||||||||   ||||||||  |||||||  |||||| | || ||||||  ||||| ||||||| |||| ||||||||     
T  41455318 tttaattagtgtttttcttatattgcggttcgatttggtttggttcggttggtaaaatcataaccgcaaatcgaaccaaaccatgtggttgagtaaaaaa 41455417  T
Q  293 atgatccgaatacatctgaaccaaatgc 320  Q
     ||||| ||||||||| |||||||||||    
T  41455418 ttgatcagaatacatccgaaccaaatgc 41455445  T

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Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 192 - 313
Target Start/End: Original strand, 22553801 - 22553920
Alignment:
Q  192 gtttaattagtgtttcttttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaa 291  Q
    ||||||||||||||| | |||||||||||||| |||||||||  || ||||  |||||| |||||||||||| ||||  ||| ||| |||| ||||||||    
T  22553801 gtttaattagtgtttttcttatgttgcggtttggtttggtttggtttggttggtaaaat-aaaatcgcaaaccgaacaaaactatggggttgagtaaaaa 22553899  T
Q  292 tatgatccgaatacatctgaac 313  Q
     | ||||| |||||||| ||||    
T  22553900 -acgatccaaatacatccgaac 22553920  T

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Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 195 - 320
Target Start/End: Complemental strand, 33901636 - 33901511
Alignment:
Q  195 taattagtgtttcttttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatat 294  Q
    |||||||||||| | |||||||||||||| |||| | || ||| ||||  ||||||||||| ||||||  ||| | ||||| |||||| | | |||| ||    
T  33901636 taattagtgtttttcttatgttgcggtttggtttagattgattaggttggtaaaataaaaaccgcaaattgaatcaaaccacgcggttgaattaaaaaat 33901537  T
Q  295 gatccgaatacatctgaaccaaatgc 320  Q
     || |||||||||| |||||||||||    
T  33901536 aattcgaatacatccgaaccaaatgc 33901511  T

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Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 194 - 282
Target Start/End: Original strand, 18432535 - 18432623
Alignment:
Q  194 ttaattagtgtttcttttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggtt 282  Q
    ||||||| ||||| |||||||||||||||| ||||| |||  |||||||  ||||||||||| |||||||  |||| ||| ||||||||    
T  18432535 ttaattaatgttttttttatgttgcggtttggtttgatttggttcggttgataaaataaaaaccgcaaaccaaaccaaactatgcggtt 18432623  T

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Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 245 - 318
Target Start/End: Original strand, 23418455 - 23418528
Alignment:
Q  245 taaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatccgaatacatctgaaccaaat 318  Q
    ||||||||||| | ||||| ||||| ||||| |||||| ||||| || |||||||||||| ||| |||||||||    
T  23418455 taaaataaaaacctcaaaccgaaccaaaccacgcggttgagtaataaaatgatccgaatatatccgaaccaaat 23418528  T

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Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 320
Target Start/End: Original strand, 4414664 - 4414791
Alignment:
Q  192 gtttaattagtgtttcttttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaa 291  Q
    ||||||||| ||||| | ||||||||  |||| |||||||||  ||| |||  |||||||||||   |||||  || | |||||| ||||| ||||||||    
T  4414664 gtttaattaatgtttttcttatgttgtagtttggtttggtttg-ttcagttcgtaaaataaaaacaacaaaccaaatcaaaccatacggttgagtaaaaa 4414762  T
Q  292 tatgatccgaatacatctgaaccaaatgc 320  Q
     |||||  |||||||||||||||||||||    
T  4414763 aatgatatgaatacatctgaaccaaatgc 4414791  T

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Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 252 - 320
Target Start/End: Complemental strand, 15216622 - 15216554
Alignment:
Q  252 aaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatccgaatacatctgaaccaaatgc 320  Q
    |||| ||||||| ||||| |||||   |||| |||||||| |||||||||||||||| |||||||||||    
T  15216622 aaaaccgcaaaccgaaccgaaccacatggttgagtaaaaaaatgatccgaatacatccgaaccaaatgc 15216554  T

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Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 308
Target Start/End: Complemental strand, 40331123 - 40331008
Alignment:
Q  192 gtttaattagtgtttcttttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaa 291  Q
    ||||||||||||||| |||||||| ||||||| |||| |||| |||| |||  ||||||||||| | ||||| |||   ||| || | ||| ||||||||    
T  40331123 gtttaattagtgttt-ttttatgtagcggtttggtttagtttgattctgttggtaaaataaaaaccacaaaccgaattaaactatacagttgagtaaaaa 40331025  T
Q  292 tatgatccgaatacatc 308  Q
     ||||||| ||||||||    
T  40331024 aatgatccaaatacatc 40331008  T

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Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 1681483 - 1681538
Alignment:
Q  19 caaaagtgcaattatgattaaattaaagcacataaatatcattttaaaatcaaaag 74  Q
    ||||||||||| ||| | ||||||||||||||||||| | ||||||||| ||||||    
T  1681483 caaaagtgcaagtataaataaattaaagcacataaatgtaattttaaaagcaaaag 1681538  T

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Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 307
Target Start/End: Complemental strand, 2796434 - 2796355
Alignment:
Q  228 tggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatccgaatacat 307  Q
    |||||| ||| ||||  ||||||||||| | ||||| ||| | |||||||||||| ||||||||  ||||||||||||||    
T  2796434 tggtttgatttggttggtaaaataaaaaccacaaactgaaacaaaccatgcggttaagtaaaaaagtgatccgaatacat 2796355  T

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Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 307
Target Start/End: Complemental strand, 2802595 - 2802516
Alignment:
Q  228 tggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatccgaatacat 307  Q
    |||||| ||| ||||  ||||||||||| | ||||| ||| | |||||||||||| ||||||||  ||||||||||||||    
T  2802595 tggtttgatttggttggtaaaataaaaaccacaaactgaaacaaaccatgcggttaagtaaaaaagtgatccgaatacat 2802516  T

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Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 230
Target Start/End: Complemental strand, 15216680 - 15216633
Alignment:
Q  183 gtgacccaggtttaattagtgtttcttttatgttgcggttttgtttgg 230  Q
    |||||| | ||||||||||||||||| |||||||||| ||||||||||    
T  15216680 gtgacctaagtttaattagtgtttctcttatgttgcgattttgtttgg 15216633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 307
Target Start/End: Original strand, 18845959 - 18846074
Alignment:
Q  193 tttaattagtgtttctt-ttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaa 291  Q
    |||||||||||||| || ||||||||||||||  ||||||||| || ||||  ||||||||||| || |||   |||| ||||||  |||| ||||||||    
T  18845959 tttaattagtgttttttcttatgttgcggtttgatttggttttgtttggttggtaaaataaaaaccgtaaattaaaccaaaccatatggttgagtaaaaa 18846058  T
Q  292 tatgatccgaatacat 307  Q
      |||| |||||||||    
T  18846059 agtgatacgaatacat 18846074  T

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Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 319
Target Start/End: Complemental strand, 691228 - 691122
Alignment:
Q  213 tgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatccgaatacatctgaa 312  Q
    ||||||||||| |||||||||  |||||||  |||||| |||| ||||||   |||| |||||||||||| || || || ||||||| | |||||| |||    
T  691228 tgttgcggtttggtttggtttggttcggttggtaaaatgaaaaccgcaaatcaaaccaaaccatgcggttgagcaagaaaatgatccaattacatccgaa 691129  T
Q  313 ccaaatg 319  Q
     ||||||    
T  691128 tcaaatg 691122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 37 - 219
Target Start/End: Original strand, 8151008 - 8151190
Alignment:
Q  37 taaattaaagcacataaatatcattttaaaatcaaaagtatagnnnnnnncttaacaagaggaacaatatgtcttagtacaaaaaatggagaaaaaaca- 135  Q
    |||||||||||||| |||||   |||| |||||||||||||||       |||| |||||| || || ||||||||||| ||||||  ||||||||| |     
T  8151008 taaattaaagcacacaaatacatttttcaaatcaaaagtatagaagaaa-cttatcaagagaaa-aacatgtcttagtaaaaaaaaacgagaaaaaaaaa 8151105  T
Q  136 tgttattctataaaattgttcattgaatttctaggagtaatagatttg-tgacccaggtttaattagtgtttcttttatgttgcg 219  Q
    ||| |||| ||||||   |||||||| |||||| ||||| ||| || | |||| || ||||||||||| ||||| ||||||||||    
T  8151106 tgtcattcaataaaaaatttcattgagtttctatgagtactaggttgggtgacacaagtttaattagtatttctcttatgttgcg 8151190  T

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Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 192 - 318
Target Start/End: Original strand, 19402678 - 19402803
Alignment:
Q  192 gtttaattagtgtttcttttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaa 291  Q
    ||||||||| | ||||| |||| ||||||||| || || |||  || ||||  ||||||||||| |||||||| |||| |||| ||||||| ||||||||    
T  19402678 gtttaattaatatttctcttatattgcggtttggtgtg-tttagtttggttggtaaaataaaaaccgcaaacataaccaaaccgtgcggttgagtaaaaa 19402776  T
Q  292 tatgatccgaatacatctgaaccaaat 318  Q
     ||  ||| ||||||||  ||||||||    
T  19402777 aattgtccaaatacatccaaaccaaat 19402803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 320
Target Start/End: Original strand, 42119338 - 42119387
Alignment:
Q  271 aaccatgcggttcagtaaaaatatgatccgaatacatctgaaccaaatgc 320  Q
    |||||||||||| ||||||||  ||||||||||||||| ||| |||||||    
T  42119338 aaccatgcggttgagtaaaaaattgatccgaatacatccgaatcaaatgc 42119387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 307
Target Start/End: Complemental strand, 22747181 - 22747121
Alignment:
Q  247 aaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatccgaatacat 307  Q
    ||||||||| ||||||| ||| | |||||||||||| | ||||||  ||||||||||||||    
T  22747181 aaataaaaaccgcaaaccgaatcaaaccatgcggttgaataaaaaattgatccgaatacat 22747121  T

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Target: scaffold0204 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 210 - 308
Target Start/End: Original strand, 26322 - 26420
Alignment:
Q  210 ttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatgcggttcagtaaaaatatgatccgaatacatc 308  Q
    ||||||||||||||||||||||||  |||||||  |||||| |||| |||||||  |||| |||||||||||| || |||||  |||||||||||||||    
T  26322 ttatgttgcggttttgtttggtttggttcggttggtaaaatgaaaaccgcaaaccaaaccaaaccatgcggttgagcaaaaaagtgatccgaatacatc 26420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0688
Description:

Target: scaffold0688; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 192 - 277
Target Start/End: Original strand, 1622 - 1707
Alignment:
Q  192 gtttaattagtgtttcttttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaacagaacctaaccatg 277  Q
    ||||||||||||||| | |||||||| ||||| ||||||||| ||||||||  ||||||||||| |||||||  |||| |||||||    
T  1622 gtttaattagtgtttttcttatgttgtggtttggtttggtttgattcggttggtaaaataaaaaccgcaaaccaaaccaaaccatg 1707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 192 - 263
Target Start/End: Original strand, 3215 - 3286
Alignment:
Q  192 gtttaattagtgtttcttttatgttgcggttttgtttggttttattcggttactaaaataaaaatcgcaaac 263  Q
    ||||||||||||||| | |||||||| ||||| |||||||||  |||||||  ||||||||||| |||||||    
T  3215 gtttaattagtgtttttcttatgttgtggtttggtttggtttggttcggttggtaaaataaaaaccgcaaac 3286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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