View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16991_low_15 (Length: 510)
Name: NF16991_low_15
Description: NF16991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16991_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 15 - 299
Target Start/End: Original strand, 31708275 - 31708570
Alignment:
| Q |
15 |
atgaacaaaatttgtgtttggtttcatggtaattggtgnnnnnnnnnctacttaaattgatatcatttttcaaatggatttttatgatattcaagttcat |
114 |
Q |
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| T |
31708275 |
atgaacaaaatttgtgtttggtttcatggtgattggtgagaaaaaaactagttaaat-gatatcatttttcaaatggatttttatgatattcaagttcat |
31708373 |
T |
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| Q |
115 |
gtttagaattacagtaaatttgccaaaaatcaatgtgccaccttgattttgttgaagtttcaaaggt------------ttttccaaagtagtgttactg |
202 |
Q |
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| T |
31708374 |
gtttagaattacagtaaatttgccaaaaatcaatgtgccaccttgattttgttgaagtttcaaaggttaaaaaaacctctaatccaaagtagtgttactg |
31708473 |
T |
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| Q |
203 |
tttataagttcaaacaaaagcaaactatgttttccatattaaaccaagaaagtagtagtagtattttattatggaacaaaaacatgttatccaaaat |
299 |
Q |
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| T |
31708474 |
tttataaatttaaacaaaagcaaactatgttttccatattaaaccaagaaagtagtagtggtattttattatggaacaaaaacatgttatccaaaat |
31708570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 299 - 479
Target Start/End: Original strand, 31708606 - 31708783
Alignment:
| Q |
299 |
tctaagcattatggatttagttttgtgattatagaatagaatgatagcttgatacgcatgcaatatatataacaaagtcagtagtattatgcacttaaaa |
398 |
Q |
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| T |
31708606 |
tctaagcattatggatttagttttgtgattatagaatagaatgatagcttgatacacatgcaatatatataacaaagtcagta---ttatgcacttaaaa |
31708702 |
T |
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| Q |
399 |
gaaacaaacaactattgactgcaacaattgtttctaagggccccactccaacccaaaacaaaaggtaagggaacagagaga |
479 |
Q |
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| T |
31708703 |
gaaacaaacaactattgactgcaacaattgtttctaagggccccactccaacccaaaacaaaaggtaagggaacagagaga |
31708783 |
T |
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