View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16991_low_16 (Length: 503)
Name: NF16991_low_16
Description: NF16991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16991_low_16 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 16 - 405
Target Start/End: Complemental strand, 32664926 - 32664537
Alignment:
| Q |
16 |
atgtgttgcaagctgcaaaagacatggagaaagtactagatgtctcaatgagccaaataaccgaagagcatccattaccaccagccacaaatgctgccta |
115 |
Q |
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| T |
32664926 |
atgtgttgcaagctgcaaaagacatggagaaagtactagatgtctcaatgagccaaataaccgaagagcatccattaccaccagccacaaatgttgccta |
32664827 |
T |
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| Q |
116 |
ccctcttctttcaagagaattcttgtggcgacacggtagcgatcttttcgcatgttctgctaattggtttctcttagacatagtgttctacagccaagtt |
215 |
Q |
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| T |
32664826 |
ccctcttctttcaagagaattcttgtggcgacacggtcgcgatcttttcgcatgttctgctaattggtttctcttagacatagtgttctacagccaagtt |
32664727 |
T |
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| Q |
216 |
ctattccaaagtgaaatatacaaacgatacctcaacgaaaaagatgatgaagatgtgtatcaagaggctttccatcttgcaagaatccaagccattcttg |
315 |
Q |
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| T |
32664726 |
ctattccaaagtgaaatatacaaacgatacctcaacgaaaaagatgatgaagatgtgtatcaagaggctttccatcttgcaagaatccaagccattcttg |
32664627 |
T |
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| Q |
316 |
ctgtttgctccaccattcccggctacttcttcaccgtctacttcatcgatcgtgtgggaagagttaaaatccaaatgatgggttttttct |
405 |
Q |
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| T |
32664626 |
ctgtttgctccaccattcccggctacttcttcaccgtctacttcatcgatcgtgtgggaagagttaaaatccaaatgatgggttttttct |
32664537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 390 - 503
Target Start/End: Original strand, 44542839 - 44542952
Alignment:
| Q |
390 |
atgatgggttttttctgatgatgtttgcgaccaaaaggagtcacaaccatgaaacctgcaaagtccaattcaccaccgaacacaagaagacccgtaattc |
489 |
Q |
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| T |
44542839 |
atgatgggttttttcttatgttgtttgcttccaaaagaagtcacagccatgaaacctgcaatagccaatgctccaccgaacacaagaagtcccgtaattc |
44542938 |
T |
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| Q |
490 |
caccttcaccacca |
503 |
Q |
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| T |
44542939 |
caccttcaccacca |
44542952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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