View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16991_low_17 (Length: 498)
Name: NF16991_low_17
Description: NF16991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16991_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 1e-73; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 24 - 171
Target Start/End: Original strand, 30784648 - 30784796
Alignment:
| Q |
24 |
tcaaataacattct-cggtcactacagtgtttaaatagagtatgatatacttaatgggcttaattaacgcgatgaataaaatcaatacaaataattacaa |
122 |
Q |
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| T |
30784648 |
tcaaataacattcttcggtcactacagtgtttaaatagagtatgatatacttaatgggcttaattaacgcgatgaataaaatcaatacaaataattacaa |
30784747 |
T |
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| Q |
123 |
aatatcaaattttatttacaacacaccctctcaaaccggtgagtggata |
171 |
Q |
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| T |
30784748 |
aatatcaaattttatttacaacacaccctctcaaaccggtgagtggata |
30784796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 351 - 481
Target Start/End: Original strand, 30786151 - 30786281
Alignment:
| Q |
351 |
tttgtattttagtctgtgagaacacggtagtcaaaaccgtgatctggaacgtagagtcgcacacgatcttgtaggtcttggtcgagtttgtgccttacca |
450 |
Q |
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| T |
30786151 |
tttgtattttagtctgtgagaacacggtagtcaaaaccgtgatctgaaacgtagagtcgcacacgatcttgtaggtcttggtcgagtttgtgccttagca |
30786250 |
T |
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| Q |
451 |
gaatcagaaattggtaggcacgggtaggatt |
481 |
Q |
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| T |
30786251 |
gaatcagaaatcggtaggcacgggtaggatt |
30786281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 351 - 481
Target Start/End: Original strand, 30248619 - 30248749
Alignment:
| Q |
351 |
tttgtattttagtctgtgagaacacggtagtcaaaaccgtgatctggaacgtagagtcgcacacgatcttgtaggtcttggtcgagtttgtgccttacca |
450 |
Q |
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| T |
30248619 |
tttgtatgttggtctttgagagcatggtagttaaaaccgtgatctagaacgtagagtcgcacgcgatcttgcaggtcttggtcgagtttgtgcctaagca |
30248718 |
T |
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| Q |
451 |
gaatcagaaattggtaggcacgggtaggatt |
481 |
Q |
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| T |
30248719 |
gaatcagaaattggtaggcacgggtaggatt |
30248749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 41 - 150
Target Start/End: Original strand, 30247776 - 30247885
Alignment:
| Q |
41 |
tcactacagtgtttaaatagagtatgatatacttaatgggcttaattaacgcgatgaataaaatcaatacaaataattacaaaatatcaaattttattta |
140 |
Q |
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| T |
30247776 |
tcactaaagtgtttatatagagtataatatacttaatgggcttaattaacgggacggataatatctatacaaataattacaaaatatcaaattttattta |
30247875 |
T |
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| Q |
141 |
caacacaccc |
150 |
Q |
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| T |
30247876 |
caacacaccc |
30247885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 412 - 480
Target Start/End: Original strand, 28493702 - 28493770
Alignment:
| Q |
412 |
cacgatcttgtaggtcttggtcgagtttgtgccttaccagaatcagaaattggtaggcacgggtaggat |
480 |
Q |
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| T |
28493702 |
cacgatcgtggaagtcttgcttgagttcgtgactaagcagaatcggaaattggtaggcacgggtaggat |
28493770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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