View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16991_low_20 (Length: 466)

Name: NF16991_low_20
Description: NF16991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16991_low_20
NF16991_low_20
[»] chr6 (8 HSPs)
chr6 (112-450)||(13064851-13065189)
chr6 (112-450)||(13071605-13071943)
chr6 (112-450)||(13075809-13076147)
chr6 (1-42)||(13064740-13064781)
chr6 (1-42)||(13071494-13071535)
chr6 (1-42)||(13075698-13075739)
chr6 (243-278)||(13072523-13072558)
chr6 (243-278)||(13076727-13076762)


Alignment Details
Target: chr6 (Bit Score: 319; Significance: 1e-180; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 112 - 450
Target Start/End: Original strand, 13064851 - 13065189
Alignment:
Q  112 aacttcaaattgttgagtacttgttgaacttgaaaccttggattcttgaacatctgctactgcttctagtgttgtagtgccctccatggaataaaaaggt 211  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13064851 aacttcaaattgttgagtacttgttgagcttgaaaccttggattcttgaacatctgccactgcttctagtgttgtagtgccctccatggaataaaaaggt 13064950  T
Q  212 tctgttcgtgcaggattctttgatacgccaaagttttgtttggtaccggtaccctgtagtcaaaatttaaatgatcaaattatataagaaaaagttatat 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13064951 tctgttcgtgcaggattctttgatacgccaaagttttgtttggtaccggtaccctgtagtcaaaatttaaatgatcaaattatataagaaaaagttatat 13065050  T
Q  312 gacattaaatgattgaatgttagataaaaactctatgctaccggagtgttcacctcttttggttcaactctatctttttctttagaaatgatcgcttcta 411  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  13065051 gacattaaatgattgaatgttagattcaaactctatgctaccggagtgttcacctcttttggttcaactctatctttttccttagaaatgatcgcttcta 13065150  T
Q  412 catgaatgtgcctttccactttcttctcttctacctttg 450  Q
    |||||||||||||||||||||||||||||||||||||||    
T  13065151 catgaatgtgcctttccactttcttctcttctacctttg 13065189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 112 - 450
Target Start/End: Original strand, 13071605 - 13071943
Alignment:
Q  112 aacttcaaattgttgagtacttgttgaacttgaaaccttggattcttgaacatctgctactgcttctagtgttgtagtgccctccatggaataaaaaggt 211  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13071605 aacttcaaattgttgagtacttgttgagcttgaaaccttggattcttgaacatctgccactgcttctagtgttgtagtgccctccatggaataaaaaggt 13071704  T
Q  212 tctgttcgtgcaggattctttgatacgccaaagttttgtttggtaccggtaccctgtagtcaaaatttaaatgatcaaattatataagaaaaagttatat 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13071705 tctgttcgtgcaggattctttgatacgccaaagttttgtttggtaccggtaccctgtagtcaaaatttaaatgatcaaattatataagaaaaagttatat 13071804  T
Q  312 gacattaaatgattgaatgttagataaaaactctatgctaccggagtgttcacctcttttggttcaactctatctttttctttagaaatgatcgcttcta 411  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  13071805 gacattaaatgattgaatgttagattcaaactctatgctaccggagtgttcacctcttttggttcaactctatctttttccttagaaatgatcgcttcta 13071904  T
Q  412 catgaatgtgcctttccactttcttctcttctacctttg 450  Q
    |||||||||||||||||||||||||||||||||||||||    
T  13071905 catgaatgtgcctttccactttcttctcttctacctttg 13071943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 112 - 450
Target Start/End: Original strand, 13075809 - 13076147
Alignment:
Q  112 aacttcaaattgttgagtacttgttgaacttgaaaccttggattcttgaacatctgctactgcttctagtgttgtagtgccctccatggaataaaaaggt 211  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13075809 aacttcaaattgttgagtacttgttgagcttgaaaccttggattcttgaacatctgccactgcttctagtgttgtagtgccctccatggaataaaaaggt 13075908  T
Q  212 tctgttcgtgcaggattctttgatacgccaaagttttgtttggtaccggtaccctgtagtcaaaatttaaatgatcaaattatataagaaaaagttatat 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13075909 tctgttcgtgcaggattctttgatacgccaaagttttgtttggtaccggtaccctgtagtcaaaatttaaatgatcaaattatataagaaaaagttatat 13076008  T
Q  312 gacattaaatgattgaatgttagataaaaactctatgctaccggagtgttcacctcttttggttcaactctatctttttctttagaaatgatcgcttcta 411  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  13076009 gacattaaatgattgaatgttagattcaaactctatgctaccggagtgttcacctcttttggttcaactctatctttttccttagaaatgatcgcttcta 13076108  T
Q  412 catgaatgtgcctttccactttcttctcttctacctttg 450  Q
    |||||||||||||||||||||||||||||||||||||||    
T  13076109 catgaatgtgcctttccactttcttctcttctacctttg 13076147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 13064740 - 13064781
Alignment:
Q  1 ttcttcatctttgtttatacatttttcaacaatttcttggcc 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  13064740 ttcttcatctttgtttatacatttttcaacaatttcttggcc 13064781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 13071494 - 13071535
Alignment:
Q  1 ttcttcatctttgtttatacatttttcaacaatttcttggcc 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  13071494 ttcttcatctttgtttatacatttttcaacaatttcttggcc 13071535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 13075698 - 13075739
Alignment:
Q  1 ttcttcatctttgtttatacatttttcaacaatttcttggcc 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  13075698 ttcttcatctttgtttatacatttttcaacaatttcttggcc 13075739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 243 - 278
Target Start/End: Original strand, 13072523 - 13072558
Alignment:
Q  243 agttttgtttggtaccggtaccctgtagtcaaaatt 278  Q
    ||||||||||||||||||||||||||||||||||||    
T  13072523 agttttgtttggtaccggtaccctgtagtcaaaatt 13072558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 243 - 278
Target Start/End: Original strand, 13076727 - 13076762
Alignment:
Q  243 agttttgtttggtaccggtaccctgtagtcaaaatt 278  Q
    ||||||||||||||||||||||||||||||||||||    
T  13076727 agttttgtttggtaccggtaccctgtagtcaaaatt 13076762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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