View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16991_low_22 (Length: 434)
Name: NF16991_low_22
Description: NF16991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16991_low_22 |
 | |
|
| [»] scaffold0041 (4 HSPs) |
| | |
|
Alignment Details
Target: scaffold0041 (Bit Score: 313; Significance: 1e-176; HSPs: 4)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 392
Target Start/End: Complemental strand, 6448 - 6075
Alignment:
| Q |
18 |
aagggttcctctctcaagttcaaatcaagaaaaagtgcttcccaaaatcccaattatcaactgctaattggtaacttaatttctcaaatgtcannnnnnn |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6448 |
aagggttcctctctcaagttcaaatcaagaaaaagtgcttcccaaaatcccaattatcaactgctaattggtaacttaatttctcaaatgtcatttttta |
6349 |
T |
|
| Q |
118 |
aaataaatttcatttcttcggttcttttccacggaattatacttattgcaacgacccctcgttgtagtgcctaattatgttttcatgaacnnnnnnnatt |
217 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
6348 |
aaataaatttaatttcttcggttcttttccacggaattatacttattgcaacgacccctcgttgtagtgcctaattatgttttcatgaacttttttt-tt |
6250 |
T |
|
| Q |
218 |
acacttgattattgatttcaagtaatggaagagataatcatagtgaaaaaatcaagcatgcaagtgaagaagcaaaataaaattattgatatattgattt |
317 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6249 |
acacttgattattgatttcaagtagtggaagagataatcatagtgaaaaaatcaagcatgcaagtgaagaagcaaaataaaattattgatatattgattt |
6150 |
T |
|
| Q |
318 |
tgtttaccatttccaatttcaaatgacacttttccacttctatctctataaatattttataagagtacaatttat |
392 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6149 |
tgtttaccatttccaatttcaaatgacatttttccacttctatctctataaatattttataagagtacaatttat |
6075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 118 - 376
Target Start/End: Complemental strand, 1498 - 1246
Alignment:
| Q |
118 |
aaataaatttcatttcttcggttcttttccacggaattatacttattgcaacgacccctcgttgtagtgcctaattatgttttcatgaacnnnnnnnatt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||| ||| | ||||||||||||||||||| ||| |
|
|
| T |
1498 |
aaataaatttcatttcttcggttcttttccacataattatacttatagcaaccacccctgattg-----cgtaattatgttttcatgaacattttt-att |
1405 |
T |
|
| Q |
218 |
acacttgattattgatttcaagtaatggaagagataatcatagtgaaaaaatcaagcatgcaagtgaagaagcaaaataaaattattgatatattgattt |
317 |
Q |
| |
|
| |||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || | |
|
|
| T |
1404 |
atacttgattattgatttcaagtagtgaaaaagataatcatagtgaaaaaatcaagcatgcaagtgaagaagcaaaataaaattattgatttattaatat |
1305 |
T |
|
| Q |
318 |
tgtttaccatttccaatttcaaatgacacttttccacttctatctctataaatatttta |
376 |
Q |
| |
|
|||||| ||||| |||||| | ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1304 |
tgtttatcattttcaattttagatgacacttttccacttctgtctctataaatatttta |
1246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 383 - 434
Target Start/End: Original strand, 6012 - 6063
Alignment:
| Q |
383 |
tacaatttatttaacccaatttttcttctactaattaaaaaatgtactcatt |
434 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
6012 |
tacaaattatttaacccaatttttcttctactaattaaaaattgtactcatt |
6063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 434
Target Start/End: Original strand, 475 - 526
Alignment:
| Q |
383 |
tacaatttatttaacccaatttttcttctactaattaaaaaatgtactcatt |
434 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||| ||| |||||||||| |
|
|
| T |
475 |
tacaaattatttaacccaatttttcttctacttgttataaattgtactcatt |
526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 29 - 207
Target Start/End: Complemental strand, 21351469 - 21351288
Alignment:
| Q |
29 |
tctcaagttcaaatcaagaaaaagtgcttcccaaaatcccaattatcaactgctaattggtaacttaatttctcaaatgtc---annnnnnnaaataaat |
125 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||| | |
|
|
| T |
21351469 |
tctcaagtttaaatcaagaaaaagtgcttcccaaaatcccaattatcaactgctaattggtaacataatttttcaaatgtccttttctttataaataatt |
21351370 |
T |
|
| Q |
126 |
ttcatttcttcggttcttttccacggaattatacttattgcaacgacccctcgttgtagtgcctaattatgttttcatgaac |
207 |
Q |
| |
|
|||||||||| ||||||||||||||| || |||||||| ||||| |||||| |||||||| |||| | |||||||| |||| |
|
|
| T |
21351369 |
ttcatttcttaggttcttttccacggcatgatacttatagcaaccacccctgattgtagtgtctaactctgttttcacgaac |
21351288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 21351500 - 21351464
Alignment:
| Q |
68 |
caattatcaactgctaattggtaacttaatttctcaa |
104 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
21351500 |
caattatcaactgctaattggtaacataatttctcaa |
21351464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University