View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16991_low_25 (Length: 416)
Name: NF16991_low_25
Description: NF16991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16991_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 20 - 227
Target Start/End: Complemental strand, 41906528 - 41906324
Alignment:
| Q |
20 |
gtgggcacgtcccttgatggaannnnnnngtgcaatacgtgaatcacc-actcccataatctttatttacaaaggcatcatcgatattaataaatttaca |
118 |
Q |
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| T |
41906528 |
gtgggcacgtcccttgatggaatttttt-gtgcaatacgtgaatcacccactcccataatctttatttacaaaggcatcatcgatattaataaatttaca |
41906430 |
T |
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| Q |
119 |
tggatttacctcnnnnnnnnnnnnnccattcgtgtcttcaaggttttatttgcttttgaaaagaaattaagaataaatttacaaaatcattcttcattag |
218 |
Q |
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| T |
41906429 |
tggatttacctc---atgtttttttccatccgtgtcttcaaggttttatttgcttttgaagagaaattaagaataaatttacaaaatcattcttcattag |
41906333 |
T |
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| Q |
219 |
tggcatgag |
227 |
Q |
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| T |
41906332 |
ttgcatgag |
41906324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 291 - 410
Target Start/End: Complemental strand, 41906260 - 41906139
Alignment:
| Q |
291 |
cattgataattaatcgatattgtatagtaacttattatttaggacaccattttttacaacgatatatctaatttggggctgatta--agtaggtaaatat |
388 |
Q |
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| T |
41906260 |
cattgataattaatcgatattgtatagtaacttattatttaggacaccattttttacaacgatatatctaatttggggctgataaggagtaggtaaatat |
41906161 |
T |
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| Q |
389 |
attgaatactcccttcatctca |
410 |
Q |
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| T |
41906160 |
gttgaatactcccatcatctca |
41906139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 126
Target Start/End: Complemental strand, 2516379 - 2516303
Alignment:
| Q |
50 |
tgcaatacgtgaatcaccactcccataatctttatttacaaaggcatcatcgatattaataaatttacatggattta |
126 |
Q |
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| T |
2516379 |
tgcaataagcgaaccaccactcctagaatctttatctataatgacattatcaatattaataaatttacttggattta |
2516303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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