View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16991_low_26 (Length: 390)
Name: NF16991_low_26
Description: NF16991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16991_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 135; Significance: 3e-70; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 140 - 372
Target Start/End: Original strand, 54532472 - 54532708
Alignment:
| Q |
140 |
atccccgtaaacaaaattagttagaaaaatgaccatatttcaagttaacaaaatatttaatcnnnnnnnnnnnnnnnnnnnnnnnactgtaagtatggac |
239 |
Q |
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| T |
54532472 |
atcccagtaaacaaaattagttagaaaaatgaccatatttcaagttaacaaaatatttaatctttttttctttccttctttttttactgcaagtatggac |
54532571 |
T |
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| Q |
240 |
gataataagaaaatgcaaagtctcaagtacatcttgaaatggacaggtggcttcgttaccacactgacaataatttgtggtttaacca----gcctatca |
335 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
54532572 |
gataataaacaaatgcaaagtctcaagtacatcttgaaatggacaggtggcttcgttaccacactgacaataatttgtggtttaaccagcctgcctatca |
54532671 |
T |
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| Q |
336 |
tttaggaaggacttaatcaagtttgaagagaatatcg |
372 |
Q |
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| T |
54532672 |
tttaggaaggacttaatcaagtttgaagagaatatcg |
54532708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 241 - 372
Target Start/End: Complemental strand, 54533068 - 54532937
Alignment:
| Q |
241 |
ataataagaaaatgcaaagtctcaagtacatcttgaaatggacaggtggcttcgttaccacactgacaataatttgtggtttaaccagcctatcatttag |
340 |
Q |
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|||||||||||||||||| ||||||||||||||| ||||||| ||||| |||||||||||| ||||||||||||||||| |||||||||| ||||||| |
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| T |
54533068 |
ataataagaaaatgcaaaatctcaagtacatcttaaaatggataggtgacttcgttaccacgatgacaataatttgtggtccaaccagcctaccatttag |
54532969 |
T |
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| Q |
341 |
gaaggacttaatcaagtttgaagagaatatcg |
372 |
Q |
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| T |
54532968 |
gaaggacttaatcaagttttaagagaatatcg |
54532937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 201
Target Start/End: Complemental strand, 54533168 - 54533110
Alignment:
| Q |
143 |
cccgtaaacaaaattagttagaaaaatgaccatatttcaagttaacaaaatatttaatc |
201 |
Q |
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||||||||||||| | |||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
54533168 |
cccgtaaacaaaactggttaaaaaaatgaccgtatttcaagttaacaaaatatttaatc |
54533110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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