View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16991_low_28 (Length: 384)

Name: NF16991_low_28
Description: NF16991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16991_low_28
NF16991_low_28
[»] chr6 (51 HSPs)
chr6 (17-368)||(31286959-31287310)
chr6 (44-368)||(28794792-28795116)
chr6 (44-340)||(27608576-27608869)
chr6 (64-368)||(27715976-27716277)
chr6 (44-368)||(28788768-28789092)
chr6 (64-368)||(27703693-27703994)
chr6 (16-368)||(27675005-27675357)
chr6 (43-366)||(25513260-25513583)
chr6 (43-366)||(26145382-26145705)
chr6 (43-366)||(25547353-25547685)
chr6 (167-368)||(27590559-27590760)
chr6 (57-368)||(26648865-26649170)
chr6 (57-368)||(26754833-26755138)
chr6 (220-366)||(25076236-25076382)
chr6 (228-366)||(27662853-27662991)
chr6 (220-366)||(26979795-26979941)
chr6 (44-364)||(27602179-27602496)
chr6 (62-368)||(26804899-26805190)
chr6 (220-366)||(26961496-26961642)
chr6 (220-354)||(27425225-27425359)
chr6 (219-353)||(27528903-27529037)
chr6 (58-186)||(25076458-25076586)
chr6 (228-363)||(26826211-26826346)
chr6 (44-366)||(26886491-26886816)
chr6 (41-195)||(25485546-25485700)
chr6 (286-366)||(26952162-26952242)
chr6 (227-366)||(26058292-26058431)
chr6 (227-366)||(26078262-26078401)
chr6 (220-334)||(26851086-26851200)
chr6 (64-322)||(27696067-27696322)
chr6 (220-366)||(25582092-25582238)
chr6 (43-145)||(26625735-26625837)
chr6 (43-145)||(26731712-26731814)
chr6 (60-112)||(26980049-26980101)
chr6 (227-322)||(25485410-25485505)
chr6 (60-195)||(26058472-26058607)
chr6 (60-195)||(26078442-26078577)
chr6 (60-109)||(25582346-25582395)
chr6 (215-368)||(27681367-27681520)
chr6 (60-111)||(26961751-26961802)
chr6 (220-330)||(26864029-26864139)
chr6 (58-113)||(26658620-26658675)
chr6 (58-113)||(26764591-26764646)
chr6 (60-149)||(26876176-26876265)
chr6 (44-112)||(27681596-27681664)
chr6 (58-105)||(26638048-26638095)
chr6 (58-105)||(26744014-26744061)
chr6 (228-267)||(29828489-29828528)
chr6 (288-366)||(26658364-26658442)
chr6 (288-366)||(26764335-26764413)
chr6 (44-112)||(26826528-26826596)
[»] scaffold0419 (1 HSPs)
scaffold0419 (44-368)||(9918-10242)
[»] scaffold0349 (1 HSPs)
scaffold0349 (64-368)||(15668-15969)
[»] scaffold0277 (2 HSPs)
scaffold0277 (44-368)||(2144-2468)
scaffold0277 (60-368)||(11123-11431)
[»] chr8 (3 HSPs)
chr8 (60-368)||(29271311-29271616)
chr8 (17-324)||(22023704-22024007)
chr8 (58-114)||(31907793-31907849)
[»] chr1 (4 HSPs)
chr1 (60-366)||(265803-266106)
chr1 (220-364)||(28125322-28125466)
chr1 (220-366)||(26138319-26138465)
chr1 (220-366)||(28130353-28130499)
[»] scaffold0003 (1 HSPs)
scaffold0003 (220-354)||(62004-62138)
[»] chr4 (10 HSPs)
chr4 (220-354)||(18076196-18076330)
chr4 (286-366)||(18677291-18677371)
chr4 (286-366)||(18721805-18721885)
chr4 (286-366)||(18729227-18729307)
chr4 (286-366)||(18653209-18653289)
chr4 (286-366)||(18687346-18687426)
chr4 (286-366)||(18697134-18697214)
chr4 (226-267)||(18682390-18682431)
chr4 (226-267)||(18726666-18726707)
chr4 (136-212)||(18726588-18726664)
[»] chr2 (1 HSPs)
chr2 (227-324)||(17990855-17990952)
[»] scaffold1870 (1 HSPs)
scaffold1870 (290-368)||(1199-1277)


Alignment Details
Target: chr6 (Bit Score: 328; Significance: 0; HSPs: 51)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 17 - 368
Target Start/End: Complemental strand, 31287310 - 31286959
Alignment:
Q  17 ggaagaatattgaaattgaagttatgcgataagtctagccttttcacattaacaaaccacttgagaagtattggtaaacattcatctgagaggttgcaat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31287310 ggaagaatattgaaattgaagttatgcgataagtctagccttttcacattaacaaaccacttgagaagtattggtaaacattcatctgagaggttgcaat 31287211  T
Q  117 tttggagactaagctgtgtcacatttgaaaacactagagaattaattttgtcattatgttttcggaacctcagctttccacatctctctattgatatgtc 216  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  31287210 tttggagactaagctgtgtcacatttgaaaacactatagaattaattttgtcattatgttttgggaacctcagcattccacatctctctattgatatgtc 31287111  T
Q  217 attaagttcgctgagattttgaaatgaagatggcaattcttctatggaagtattaacaaacaaaatacgttttatatttgtcatcttgcataataattct 316  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31287110 attaagttcactgagattttgaaatgaagatggcaattctcctatggaagtattaacaaacaaaatacgttttatatttgtcatcttgcataataattct 31287011  T
Q  317 ggaaaactattgagactctcacaaaaagagagttccaattccttaagagatg 368  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  31287010 ggaaaactattgagactcacacaaaaagagagttccaattccttaagagatg 31286959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 44 - 368
Target Start/End: Complemental strand, 28795116 - 28794792
Alignment:
Q  44 gataagtctagccttttcacattaacaaaccacttgagaagtattggtaaacattcatctgagaggttgcaattttggagactaagctgtgtcacatttg 143  Q
    ||||||||||||  ||||||||||||| |||||||||||| |||||| | ||||||||||||||||||||| |    ||||||||||| | ||| |||||    
T  28795116 gataagtctagcaatttcacattaacacaccacttgagaaatattgggagacattcatctgagaggttgcagtcgctgagactaagctttctcaaatttg 28795017  T
Q  144 aaaacactagagaattaattttgtcattatgttttcggaacctcagctttccacatctctctattgatatgtcattaagttcgctgagattttgaaatga 243  Q
    ||||||||| |||||  ||||  ||||| |||||| ||||||||| | ||||||||  | ||| |||||  |||| ||||||  ||||||||||||||||    
T  28795016 aaaacactatagaatacatttgatcattctgttttgggaacctcatcattccacattccactactgataactcatcaagttcattgagattttgaaatga 28794917  T
Q  244 agatggcaattcttctatggaagtatta-acaaacaaaatacgttttatatttgtcatcttgcataataattctggaaaactattgagactctcacaaaa 342  Q
    ||||||||||||| |||||||||||| | | | ||  |||   ||| ||||||||||||||||||||||||| ||||||| | |||||||||||||||||    
T  28794916 agatggcaattctcctatggaagtataagatatac-caatctctttgatatttgtcatcttgcataataattttggaaaattcttgagactctcacaaaa 28794818  T
Q  343 agagagttccaattccttaagagatg 368  Q
    |||||| |||||||| ||||||||||    
T  28794817 agagagatccaattcgttaagagatg 28794792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 44 - 340
Target Start/End: Original strand, 27608576 - 27608869
Alignment:
Q  44 gataagtctagccttttcacattaacaaaccacttgagaagtattggtaaacattcatctgagaggttgcaattttggagactaagctgtgtcacatttg 143  Q
    ||||||||||| | | ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    |||| |||||| ||||| |||||    
T  27608576 gataagtctagacatgtcacattaacaaaccacttgagaagtattgggagacattcatctgagaggttgcaatccatgagagtaagctctgtcatatttg 27608675  T
Q  144 aaaacactagagaattaattttgtcattatgttttcggaacctcagctttccacatctctctattgatatgtcattaagttcgctgagattttgaaatga 243  Q
    |||||||||  ||||  || || ||||| |||||| ||||||||||| |||||    |  | | |||||  || | |||||| |||||||||||||||||    
T  27608676 aaaacactattgaatacatcttatcattctgttttgggaacctcagcgttcca---tttgccactgataactcttgaagttcactgagattttgaaatga 27608772  T
Q  244 agatggcaattcttctatggaagtattaacaaacaaaatacgttttatatttgtcatcttgcataataattctggaaaactattgagactctcacaa 340  Q
    | |||||| ||||  |||||||||| |||  |||||||||   | ||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  27608773 aaatggcagttctcttatggaagtactaatcaacaaaatattgtctatctttgtcatcttgcataataattctggaaaactatcgagactctcacaa 27608869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 64 - 368
Target Start/End: Original strand, 27715976 - 27716277
Alignment:
Q  64 attaacaaaccacttgagaagtattggtaaacattcatctgagaggttgcaattttggagactaagctgtgtcacatttgaaaacactagagaattaatt 163  Q
    ||||||| |||||||||||| | || | | |||||||||||||||||||||||  | |||| |||||||||||||||||||||||||||  ||||  ||     
T  27715976 attaacacaccacttgagaactcttcggagacattcatctgagaggttgcaatggtagagagtaagctgtgtcacatttgaaaacactattgaatacatc 27716075  T
Q  164 ttgtcattatgttttcggaacctcagctttccacatctctctattgatatgtcattaagttcgctgagattttgaaatgaagatggcaattcttctatgg 263  Q
    || ||||| |||||| ||||||||||| ||||| || || ||   ||||  | || |||||| || ||||||||||||||| |||||| |||| ||||||    
T  27716076 ttatcattctgttttgggaacctcagcattccatatgtcact---gataacttatgaagttcactaagattttgaaatgaaaatggcagttctcctatgg 27716172  T
Q  264 aagtattaacaaacaaaatacgttttatatttgtcatcttgcataataattctggaaaactattgagactctcacaaaaagagagttccaattccttaag 363  Q
    ||||||||   ||| |||||   | |||||||||||||||||||||||||||||||||||| |||||||||   ||| ||  ||| | ||||||||||||    
T  27716173 aagtattacacaaccaaatattgtctatatttgtcatcttgcataataattctggaaaactcttgagactcctgcaagaactgagattcaattccttaag 27716272  T
Q  364 agatg 368  Q
    |||||    
T  27716273 agatg 27716277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 44 - 368
Target Start/End: Complemental strand, 28789092 - 28788768
Alignment:
Q  44 gataagtctagccttttcacattaacaaaccacttgagaagtattggtaaacattcatctgagaggttgcaattttggagactaagctgtgtcacatttg 143  Q
    |||||||||||   | |||||| |||| |||||||||||| |||||| | ||||||||||||||| |||||||| | ||||  ||| | |||||| ||||    
T  28789092 gataagtctagatatgtcacataaacacaccacttgagaaatattgggagacattcatctgagagcttgcaattattgagaacaagatttgtcacttttg 28788993  T
Q  144 aaaacactagagaattaattttgtcattatgttttcggaacctcagctttccacatctctctattgatatgtcattaagttcgctgagattttgaaatga 243  Q
    ||||||||| |||||  ||||  ||||| |||||| ||||||||||| |||||  |  |  || || ||  |||| |||||| |||||||||||||||||    
T  28788992 aaaacactatagaatacatttgatcattctgttttgggaacctcagcattccagcttcccgtactgttaactcatgaagttcactgagattttgaaatga 28788893  T
Q  244 agatggcaattcttctatggaagtattaacaaacaaaatacgttttatatttgtcatcttgcataataattctggaaaactattgagactctcacaaaaa 343  Q
    |||||||||||||  ||||||||||||    ||| ||||   ||| ||||||||||||||||||||||||| ||||||||| ||||||||| |||||  |    
T  28788892 agatggcaattctcttatggaagtattctgcaaccaaatctttttaatatttgtcatcttgcataataattttggaaaactcttgagactcccacaatga 28788793  T
Q  344 gagagttccaattccttaagagatg 368  Q
    ||||| | |||||| ||||| ||||    
T  28788792 gagagattcaattcattaagggatg 28788768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 64 - 368
Target Start/End: Original strand, 27703693 - 27703994
Alignment:
Q  64 attaacaaaccacttgagaagtattggtaaacattcatctgagaggttgcaattttggagactaagctgtgtcacatttgaaaacactagagaattaatt 163  Q
    ||||||| ||||||||||||||||||| | |||||||||||||||||||||||    |||| |||| |||||||||||| |||||||||  ||||  ||     
T  27703693 attaacacaccacttgagaagtattgggagacattcatctgagaggttgcaatggcagagagtaagttgtgtcacatttaaaaacactattgaatacatc 27703792  T
Q  164 ttgtcattatgttttcggaacctcagctttccacatctctctattgatatgtcattaagttcgctgagattttgaaatgaagatggcaattcttctatgg 263  Q
    || ||||| |||||| ||||||||||| |||||    |  | | |||||  |||| |||||| |||||||||||||||||| |||||| |||| |||| |    
T  27703793 ttatcattctgttttgggaacctcagcattcca---tttaccactgataactcatcaagttcactgagattttgaaatgaaaatggcagttctcctatag 27703889  T
Q  264 aagtattaacaaacaaaatacgttttatatttgtcatcttgcataataattctggaaaactattgagactctcacaaaaagagagttccaattccttaag 363  Q
    ||||||     ||| |||||   | |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||  ||| | |||||| |||||    
T  27703890 aagtatgctgcaaccaaatattatctatatttgtcatcttgcataataattctggaaaactatcgagactctcacaataacggagattcaattctttaag 27703989  T
Q  364 agatg 368  Q
    |||||    
T  27703990 agatg 27703994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 16 - 368
Target Start/End: Original strand, 27675005 - 27675357
Alignment:
Q  16 aggaagaatattgaaattgaagttatgcgataagtctagccttttcacattaacaaaccacttgagaagtattggtaaacattcatctgagaggttgcaa 115  Q
    ||||||||| |||||||||   ||||| ||||||||||||  || |||||||||| ||||||| |||| |||| | | | |||||||||||||||||||     
T  27675005 aggaagaattttgaaattg---ttatgtgataagtctagcaattccacattaacacaccacttaagaactatttggagatattcatctgagaggttgcac 27675101  T
Q  116 ttttggagactaagctgtgtcacatttgaaaacactagagaattaattttgtcattatgttttcggaacctcagctttccacatctctctattgatatgt 215  Q
    |  | ||  ||||||| |||||| ||||||||||||  |||||  ||| | |||||||||||| ||||||||||| ||| |  |  |  || |||||  |    
T  27675102 tcgtagattctaagctttgtcacctttgaaaacactttagaatacattctatcattatgttttgggaacctcagcattctagcttcccgtactgataact 27675201  T
Q  216 cattaagttcgctgagattttgaaatgaagatggcaattcttctatgga---agtattaacaaacaaaatacgttttatatttgtcatcttgcataataa 312  Q
    ||| |||||| |||||||||||||||||||||||||||||| |||||||   | ||| | | ||   |||   ||| |||||||||||||||||||||||    
T  27675202 catcaagttcactgagattttgaaatgaagatggcaattctcctatggatatattataatctaaatcaatctctttgatatttgtcatcttgcataataa 27675301  T
Q  313 ttctggaaaactattgagactctcacaaaaagagagttccaattccttaagagatg 368  Q
    |||||||||||| |||||||||  |||| || |||  |||| ||||||||||||||    
T  27675302 ttctggaaaactcttgagactcgaacaacaacagatatccagttccttaagagatg 27675357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 43 - 366
Target Start/End: Complemental strand, 25513583 - 25513260
Alignment:
Q  43 cgataagtctagccttttcacattaacaaaccacttgagaagtattggtaaacattcatctgagaggttgcaattttggagactaagctgtgtcacattt 142  Q
    ||||||||||||   | ||||||||||||||||||||||||||||||| | |||||||||||||| ||||   |    |||   ||| |||  |||||||    
T  25513583 cgataagtctagaaatgtcacattaacaaaccacttgagaagtattgggagacattcatctgagacgttgttgtcactgaggtcaagatgttccacattt 25513484  T
Q  143 gaaaacactagagaattaattttgtcattatgttttcggaacctcagctttccacatctctctattgatatgtcattaagttcgctgagattttgaaatg 242  Q
    ||||||||||  ||||| ||||| ||||||| |||| ||||||| |||||||| | ||    ||||| ||     | |||||| |||| |||||||||||    
T  25513483 gaaaacactattgaattcattttatcattatattttgggaacctgagctttcctcctccagatattgttaaccgttaaagttcactgaaattttgaaatg 25513384  T
Q  243 aagatggcaattcttctatggaagtattaacaaacaaaatacgttttatatttgtcatcttgcataataattctggaaaactattgagactctcacaaaa 342  Q
    ||||||||||||||||||||||||||| |   | |  ||||  |||||||||||||||||| |||||||||||||||||| | |||||||||| |||       
T  25513383 aagatggcaattcttctatggaagtatcatatatctcaatatcttttatatttgtcatcttacataataattctggaaaattcttgagactcttacaccc 25513284  T
Q  343 agagagttccaattccttaagaga 366  Q
    ||||| ||| |||| |||||||||    
T  25513283 agagatttcaaatttcttaagaga 25513260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 43 - 366
Target Start/End: Complemental strand, 26145705 - 26145382
Alignment:
Q  43 cgataagtctagccttttcacattaacaaaccacttgagaagtattggtaaacattcatctgagaggttgcaattttggagactaagctgtgtcacattt 142  Q
    ||||||||||||   | ||||||||||||||||||||||||||||||| | ||||||||| |||||||||   | |  |||   ||  |||  |||||||    
T  26145705 cgataagtctagaaatgtcacattaacaaaccacttgagaagtattgggagacattcatccgagaggttgttgtctctgaggtcaacatgttccacattt 26145606  T
Q  143 gaaaacactagagaattaattttgtcattatgttttcggaacctcagctttccacatctctctattgatatgtcattaagttcgctgagattttgaaatg 242  Q
    ||||||||||  ||||| ||| | ||||||| |||| ||||||| |||||||| | ||    ||||| ||     | |||||| |||| |||||||||||    
T  26145605 gaaaacactattgaattcattgtatcattatattttgggaacctgagctttccccctccagatattgttaaccgttgaagttcactgaaattttgaaatg 26145506  T
Q  243 aagatggcaattcttctatggaagtattaacaaacaaaatacgttttatatttgtcatcttgcataataattctggaaaactattgagactctcacaaaa 342  Q
    || || ||||||||||||||||||||| |   | |  ||||  |||||||||||||||||| |||||||||||||||||| | |||||||||||||||      
T  26145505 aatatcgcaattcttctatggaagtatcatatatctcaatatcttttatatttgtcatcttacataataattctggaaaattcttgagactctcacaacc 26145406  T
Q  343 agagagttccaattccttaagaga 366  Q
    ||||| ||| |||| |||||||||    
T  26145405 agagatttcaaatttcttaagaga 26145382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 43 - 366
Target Start/End: Complemental strand, 25547685 - 25547353
Alignment:
Q  43 cgataagtctagccttttcacattaacaaaccacttgagaagtattggtaaacattcatctgagaggttgcaattttggagactaagctgtgtcacattt 142  Q
    ||||||||||||   | ||||||||||||||||||||||||||||||| | |||||||||||||||||||   |||  |||   ||  |||  |||||||    
T  25547685 cgataagtctagaaatgtcacattaacaaaccacttgagaagtattgggagacattcatctgagaggttgttgtttctgaggtcaacatgttccacattt 25547586  T
Q  143 gaaaacactagagaattaattttgtcattatgttttcggaacctcagctttccacatctctc-tatt--gatat-gtca-----ttaagttcgctgagat 233  Q
    ||||||||||  ||||| ||||| ||||||| |||| ||||||| |||||||| | |   || |||   ||||| || |     | |||||| |||| ||    
T  25547585 gaaaacactattgaattcattttatcattatattttgggaacctgagctttccccctaggtcgtatccagatattgttaaccgttgaagttcactgaaat 25547486  T
Q  234 tttgaaatgaagatggcaattcttctatggaagtattaacaaacaaaatacgttttatatttgtcatcttgcataataattctggaaaactattgagact 333  Q
    ||||||||||| | |||||||||||||| ||||||| |   | |   |||  ||||||||||||||||||||||||||||||||||||| | ||||||||    
T  25547485 tttgaaatgaatacggcaattcttctatagaagtatcatatatcttgatatcttttatatttgtcatcttgcataataattctggaaaattcttgagact 25547386  T
Q  334 ctcacaaaaagagagttccaattccttaagaga 366  Q
    ||||||| |||||| ||| |||| |||||||||    
T  25547385 ctcacaataagagatttcaaatttcttaagaga 25547353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 167 - 368
Target Start/End: Original strand, 27590559 - 27590760
Alignment:
Q  167 tcattatgttttcggaacctcagctttccacatctctctattgatatgtcattaagttcgctgagattttgaaatgaagatggcaattcttctatggaag 266  Q
    |||||||||||| ||||||||||| ||||| ||  |  || |||||  |||| |||||| ||||||||||||||||||||||||||||||  ||||||||    
T  27590559 tcattatgttttgggaacctcagcattccaaattcccgtactgataactcatcaagttcactgagattttgaaatgaagatggcaattctcgtatggaag 27590658  T
Q  267 tattaacaaacaaaatacgttttatatttgtcatcttgcataataattctggaaaactattgagactctcacaaaaagagagttccaattccttaagaga 366  Q
    |||    |||| ||||    | |||||||||||||||||||||||||| ||||||||| |||||||| | |||| |||| || | |||||| ||||||||    
T  27590659 tataccaaaaccaaatcttgtctatatttgtcatcttgcataataattttggaaaacttttgagactataacaacaagaaagcttcaattctttaagaga 27590758  T
Q  367 tg 368  Q
    ||    
T  27590759 tg 27590760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 57 - 368
Target Start/End: Complemental strand, 26649170 - 26648865
Alignment:
Q  57 ttttcacattaacaaaccacttgagaagtattggtaaacattcatctgagaggttgcaattttggagactaagctgtgtcacatttgaaaacactagaga 156  Q
    |||||| ||||||| |||| ||||||| |||| | | || ||||||  ||||||||||||||| ||||  ||| ||   ||||||||||||||||| |||    
T  26649170 ttttcagattaacacaccatttgagaattattaggagactttcatcaaagaggttgcaattttcgagaacaagatgatccacatttgaaaacactacaga 26649071  T
Q  157 attaattttgtcattatgttttcggaacctcagctttccacatctctctattgatatgtcattaagttcgctgagattttgaaatgaagatggcaattct 256  Q
    || |||||| |||||| ||||| ||||||| | | ||||| || | | ||    || |     |||||| |||||||| |||||||||||||||||||||    
T  26649070 ataaattttatcattaggttttgggaacctaaacattccaaatatgtgtaaac-tacg-----aagttcactgagattatgaaatgaagatggcaattct 26648977  T
Q  257 tctatggaagtatta-acaaacaaaatacgttttatatttgtcatcttgcataataattctggaaaactattgagactctcacaaaaagagagttccaat 355  Q
     |||| |||||  || ||||| |||||| ||||||||||| |||| ||||||||||||||||||||| | || ||||||||||||  |  ||||||||||    
T  26648976 cctattgaagttctagacaaa-aaaatatgttttatatttctcattttgcataataattctggaaaattctttagactctcacaaccactgagttccaat 26648878  T
Q  356 tccttaagagatg 368  Q
    | |||||||||||    
T  26648877 tgcttaagagatg 26648865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 57 - 368
Target Start/End: Complemental strand, 26755138 - 26754833
Alignment:
Q  57 ttttcacattaacaaaccacttgagaagtattggtaaacattcatctgagaggttgcaattttggagactaagctgtgtcacatttgaaaacactagaga 156  Q
    |||||| ||||||| |||| ||||||| |||| | | || ||||||  ||||||||||||||| ||||  ||| ||   ||||||||||||||||| |||    
T  26755138 ttttcagattaacacaccatttgagaattattaggagactttcatcaaagaggttgcaattttcgagaacaagatgatccacatttgaaaacactacaga 26755039  T
Q  157 attaattttgtcattatgttttcggaacctcagctttccacatctctctattgatatgtcattaagttcgctgagattttgaaatgaagatggcaattct 256  Q
    || |||||| |||||| ||||| ||||||| | | ||||| || | | ||    || |     |||||| |||||||| |||||||||||||||||||||    
T  26755038 ataaattttatcattaggttttgggaacctaaacattccaaatatgtgtaaac-tacg-----aagttcactgagattatgaaatgaagatggcaattct 26754945  T
Q  257 tctatggaagtatta-acaaacaaaatacgttttatatttgtcatcttgcataataattctggaaaactattgagactctcacaaaaagagagttccaat 355  Q
     |||| |||||  || ||||| |||||| ||||||||||| |||| ||||||||||||||||||||| | || ||||||||||||  |  ||||||||||    
T  26754944 cctattgaagttctagacaaa-aaaatatgttttatatttctcattttgcataataattctggaaaattctttagactctcacaaccactgagttccaat 26754846  T
Q  356 tccttaagagatg 368  Q
    | |||||||||||    
T  26754845 tgcttaagagatg 26754833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 220 - 366
Target Start/End: Complemental strand, 25076382 - 25076236
Alignment:
Q  220 aagttcgctgagattttgaaatgaagatggcaattcttctatggaagtattaacaaacaaaatacgttttatatttgtcatcttgcataataattctgga 319  Q
    |||||| |||||||||||||||||| ||||||||||| |||||||||||    | |||||||||| ||| | ||||||||||||||| ||||||||||||    
T  25076382 aagttcactgagattttgaaatgaaaatggcaattctcctatggaagtaccgtccaacaaaatacttttcaaatttgtcatcttgcacaataattctgga 25076283  T
Q  320 aaactattgagactctcacaaaaagagagttccaattccttaagaga 366  Q
    ||||| |||||||||  |||   ||| |||| |||||||||||||||    
T  25076282 aaactcttgagactccaacactcagaaagtttcaattccttaagaga 25076236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 228 - 366
Target Start/End: Original strand, 27662853 - 27662991
Alignment:
Q  228 tgagattttgaaatgaagatggcaattcttctatggaagtattaacaaacaaaatacgttttatatttgtcatcttgcataataattctggaaaactatt 327  Q
    ||||||||| ||||||| |||||| ||||||||||||||||| |   ||| ||||   ||||||||||| ||||||||||||||||||||||||||| ||    
T  27662853 tgagatttttaaatgaaaatggcatttcttctatggaagtatcacataaccaaatctcttttatatttgacatcttgcataataattctggaaaactctt 27662952  T
Q  328 gagactctcacaaaaagagagttccaattccttaagaga 366  Q
    |||||||  |||||||  ||||||||||| |||||||||    
T  27662953 gagactcctacaaaaatggagttccaatttcttaagaga 27662991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 220 - 366
Target Start/End: Complemental strand, 26979941 - 26979795
Alignment:
Q  220 aagttcgctgagattttgaaatgaagatggcaattcttctatggaagtattaacaaacaaaatacgttttatatttgtcatcttgcataataattctgga 319  Q
    |||||| ||||||| |||||||||| ||||||||||| ||||||||||||||   |||  |||   |||||||||| |||| |  |||||||||||||||    
T  26979941 aagttcactgagatattgaaatgaaaatggcaattctcctatggaagtattagagaacccaatcttttttatatttttcatttgacataataattctgga 26979842  T
Q  320 aaactattgagactctcacaaaaagagagttccaattccttaagaga 366  Q
    ||||| |||||||| |||||   ||||||||||||||||||||||||    
T  26979841 aaacttttgagactatcacactcagagagttccaattccttaagaga 26979795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 44 - 364
Target Start/End: Original strand, 27602179 - 27602496
Alignment:
Q  44 gataagtctagccttttcacattaacaaaccacttgagaagtattggtaaacattcatctgagaggttgcaattttggagactaagctgtgtcacatttg 143  Q
    |||||| ||||  ||| |||||||||| ||||| | ||||||||| | | | ||||||||||||||||||  ||||  |  ||||| ||  |||||||||    
T  27602179 gataagactagattttccacattaacacaccacattagaagtattcggagaaattcatctgagaggttgctcttttcaattctaagatggttcacatttg 27602278  T
Q  144 aaaacactagagaattaattttgtcattatgttttcggaacctcagctttccacatctctctattgatatgtcattaagttcgctgagattttgaaatga 243  Q
    |||| |||| |||||| ||||| ||||| |||||| ||||||| ||| ||||||||   | ||||  || |  || |||||| ||||||||||||| |||    
T  27602279 aaaatactatagaattcattttatcattttgttttgggaacctgagcattccacattgatatatttgtaagcgatcaagttcactgagattttgaattga 27602378  T
Q  244 agatggcaattcttctatggaagtattaacaaacaaaatacgttttatatttgtcatcttgcataataattctggaaaactattgagactctcacaaaaa 343  Q
    | |||| ||   ||| ||| |||| | |   ||| |||||  ||||| ||||||||||||||||||||||||||||||||| |||||||||| ||| |      
T  27602379 aaatggaaa---ttccatgcaagtttcattcaaccaaatatcttttaaatttgtcatcttgcataataattctggaaaactcttgagactcttacacatg 27602475  T
Q  344 gagagttccaattccttaaga 364  Q
    | ||||||||||  |||||||    
T  27602476 gcgagttccaatctcttaaga 27602496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 62 - 368
Target Start/End: Complemental strand, 26805190 - 26804899
Alignment:
Q  62 acattaacaaaccacttgagaagtattggtaaacattcatctgagaggttgcaattttggagactaagctgtgtcacatttgaaaacactagagaattaa 161  Q
    ||||||||| ||||||| |||| |||| | |   ||||||||||||||||||||| || ||||||||||| ||||||||||||||||| || |||||  |    
T  26805190 acattaacacaccacttaagaactatttggaggtattcatctgagaggttgcaatctttgagactaagctctgtcacatttgaaaacattatagaataca 26805091  T
Q  162 ttttgtcattatgttttcggaacctcagctttccacatctctctattgatatgtcattaagttcgctgagattttgaaatgaagatggcaattcttctat 261  Q
    |||| |||||               |||| ||||||||  |  || |||||  |||| |||||| || |||||||||||||||||| |||||||| ||||    
T  26805090 ttttatcatt---------------cagcattccacattcccgtactgataactcatcaagttcactcagattttgaaatgaagatagcaattctcctat 26805006  T
Q  262 ggaagtattaacaaacaaaatacgttttatatttgtcatcttgcataataattctggaaaactattgagactctcacaaaaagagagttccaattcctta 361  Q
    || ||||| |   ||| ||||||  | ||| |||||||||| ||||||||||| ||||||||| |||||||| |||||| || | || | |||||| |||    
T  26805005 gggagtataattcaaccaaatacagtctatgtttgtcatctcgcataataattttggaaaactcttgagactatcacaacaacatagattcaattcttta 26804906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 220 - 366
Target Start/End: Complemental strand, 26961642 - 26961496
Alignment:
Q  220 aagttcgctgagattttgaaatgaagatggcaattcttctatggaagtattaacaaacaa-aatacgttttatatttgtcatcttgcataataattctgg 318  Q
    |||||| ||||||| |||||||||| |||| |||||| |||||||||||| | |||| |  |||   ||||||||||||||| | |||||||||||||||    
T  26961642 aagttcactgagatattgaaatgaaaatggaaattctcctatggaagtatca-caaagattaatctcttttatatttgtcatttggcataataattctgg 26961544  T
Q  319 aaaactattgagactctcacaaaaagagagttccaattccttaagaga 366  Q
    |||||| |||||||| |||||   ||||||||||||||||||||||||    
T  26961543 aaaacttttgagactatcacacttagagagttccaattccttaagaga 26961496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 220 - 354
Target Start/End: Original strand, 27425225 - 27425359
Alignment:
Q  220 aagttcgctgagattttgaaatgaagatggcaattcttctatggaagtattaacaaacaaaatacgttttatatttgtcatcttgcataataattctgga 319  Q
    |||||| || ||||||||||| ||| |||| |||||| |||||||||| |     ||||| |||  ||||||||||||||||||||||||||||||||||    
T  27425225 aagttcactaagattttgaaaggaaaatggaaattctcctatggaagtttccttcaacaagatagattttatatttgtcatcttgcataataattctgga 27425324  T
Q  320 aaactattgagactctcacaaaaagagagttccaa 354  Q
    ||||| |||||||||| ||||  ||||||||||||    
T  27425325 aaactcttgagactcttacaattagagagttccaa 27425359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 219 - 353
Target Start/End: Original strand, 27528903 - 27529037
Alignment:
Q  219 taagttcgctgagattttgaaatgaagatggcaattcttctatggaagtattaacaaacaaaatacgttttatatttgtcatcttgcataataattctgg 318  Q
    ||||||| || ||||||||||| |||||| | |||| |||||||||||| |     ||||| |||  |||||||||||||||||||||||||||||||||    
T  27528903 taagttcactaagattttgaaaggaagattgaaatttttctatggaagtttccttcaacaagatagattttatatttgtcatcttgcataataattctgg 27529002  T
Q  319 aaaactattgagactctcacaaaaagagagttcca 353  Q
    |||||| |||||||||| ||||  |||||||||||    
T  27529003 aaaactcttgagactcttacaattagagagttcca 27529037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 58 - 186
Target Start/End: Complemental strand, 25076586 - 25076458
Alignment:
Q  58 tttcacattaacaaaccacttgagaagtattggtaaacattcatctgagaggttgcaattttggagactaagctgtgtcacatttgaaaacactagagaa 157  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||| ||| ||  ||  |||||| |||| ||| ||||| |||| ||||||| ||||    
T  25076586 tttcacattaacaaaccacttgagaagtattggaagacattcatctgaaaggatgttatcgtggagattaagatgtttcacacttgataacactatagaa 25076487  T
Q  158 ttaattttgtcattatgttttcggaacct 186  Q
    |||||||| |||| || ||| ||||||||    
T  25076486 ttaattttatcatcatctttacggaacct 25076458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 228 - 363
Target Start/End: Complemental strand, 26826346 - 26826211
Alignment:
Q  228 tgagattttgaaatgaagatggcaattcttctatggaagtatta-acaaacaaaatacgttttatatttgtcatcttgcataataattctggaaaactat 326  Q
    |||||||| |||||||||||||||||||| |||||||||||| | |||||| |||| | |||||| ||||||||||  |||||||||| ||||||||| |    
T  26826346 tgagatttcgaaatgaagatggcaattctcctatggaagtatcatacaaac-aaattccttttatttttgtcatctcacataataattttggaaaactct 26826248  T
Q  327 tgagactctcacaaaaagagagttccaattccttaag 363  Q
    ||||||||| |||   |||||||| ||| ||||||||    
T  26826247 tgagactcttacagccagagagtttcaaatccttaag 26826211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 44 - 366
Target Start/End: Complemental strand, 26886816 - 26886491
Alignment:
Q  44 gataagtctagccttttcacattaacaaaccacttgagaagtattggtaaacattcatctgagaggttgcaattttggagactaagctgtgtcacatttg 143  Q
    |||||||||||   ||||||||||||||||||||||||||| ||||| | |||||||  |||||| ||||  |  | |||   |||   |  ||||||||    
T  26886816 gataagtctagatgtttcacattaacaaaccacttgagaagcattggaagacattcaaatgagagattgctttcgtagagtgaaagagattccacatttg 26886717  T
Q  144 aaaacactagagaattaattttgtcattatgttttcggaacctcagctttccacatctctctattgatatgtcattaagttcgctgagattttgaaatga 243  Q
    |||| |||| || ||  ||||||||| |||||||| ||||||| | | |||||| ||  | ||||| || || |  |||||| |||||||||| ||||||    
T  26886716 aaaatactataggatacattttgtcaatatgttttgggaaccttaacattccacttcgatatattgttacgtgacgaagttcactgagattttcaaatga 26886617  T
Q  244 agatggcaattcttctatggaagtattaaca---aacaaaatacgttttatatttgtcatcttgcataataattctggaaaactattgagactctcacaa 340  Q
    | |||||||| || |||||||||| |||  |   |||  |||   ||||| ||||||||||||||||||||||||||| ||  | |||||||||  ||||    
T  26886616 aaatggcaatcctcctatggaagtgttattatgtaacgcaatctcttttaaatttgtcatcttgcataataattctgggaatttcttgagactcctacaa 26886517  T
Q  341 aaagagagttccaattccttaagaga 366  Q
     |||||||||| |||||||| |||||    
T  26886516 taagagagttcaaattccttgagaga 26886491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 41 - 195
Target Start/End: Complemental strand, 25485700 - 25485546
Alignment:
Q  41 tgcgataagtctagccttttcacattaacaaaccacttgagaagtattggtaaacattcatctgagaggttgcaattttggagactaagctgtgtcacat 140  Q
    ||||||||||||||   | ||||||||||||||||||||||||||||||| | |||||||||||||||||||   |||  |||   ||  |||  |||||    
T  25485700 tgcgataagtctagaaatgtcacattaacaaaccacttgagaagtattgggagacattcatctgagaggttgttgtttctgagctcaacatgttccacat 25485601  T
Q  141 ttgaaaacactagagaattaattttgtcattatgttttcggaacctcagctttcc 195  Q
    ||||||||||||  ||||| ||||| ||||||| |||| ||||||| ||||||||    
T  25485600 ttgaaaacactattgaattcattttatcattatatttttggaacctgagctttcc 25485546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 286 - 366
Target Start/End: Complemental strand, 26952242 - 26952162
Alignment:
Q  286 ttttatatttgtcatcttgcataataattctggaaaactattgagactctcacaaaaagagagttccaattccttaagaga 366  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||||   |||||||| |||||||| ||||||    
T  26952242 ttttatatttgtcatcttgcataataattctggaaagctcttgagactctcacactcagagagtttcaattcctcaagaga 26952162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 227 - 366
Target Start/End: Complemental strand, 26058431 - 26058292
Alignment:
Q  227 ctgagattttgaaatgaagatggcaattcttctatggaagtattaacaaacaaaatacgttttatatttgtcatcttgcataataattctggaaaactat 326  Q
    |||| ||||||||||||| |||||||||||||||||||||||| |   | |  ||||  |||||||||||||||||  |||||||||||||||||| | |    
T  26058431 ctgaaattttgaaatgaatatggcaattcttctatggaagtatcatatatctcaatatcttttatatttgtcatctcacataataattctggaaaattct 26058332  T
Q  327 tgagactctcacaaaaagagagttccaattccttaagaga 366  Q
    |||||||| |||||  || || ||| |||| |||||||||    
T  26058331 tgagactcacacaatcagtgatttcaaatttcttaagaga 26058292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 227 - 366
Target Start/End: Complemental strand, 26078401 - 26078262
Alignment:
Q  227 ctgagattttgaaatgaagatggcaattcttctatggaagtattaacaaacaaaatacgttttatatttgtcatcttgcataataattctggaaaactat 326  Q
    |||| ||||||||||||| |||||||||||||||||||||||| |   | |  ||||  |||||||||||||||||  |||||||||||||||||| | |    
T  26078401 ctgaaattttgaaatgaatatggcaattcttctatggaagtatcatatatctcaatatcttttatatttgtcatctcacataataattctggaaaattct 26078302  T
Q  327 tgagactctcacaaaaagagagttccaattccttaagaga 366  Q
    |||||||| |||||  || || ||| |||| |||||||||    
T  26078301 tgagactcacacaatcagtgatttcaaatttcttaagaga 26078262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 220 - 334
Target Start/End: Complemental strand, 26851200 - 26851086
Alignment:
Q  220 aagttcgctgagattttgaaatgaagatggcaattcttctatggaagtattaacaaacaaaatacgttttatatttgtcatcttgcataataattctgga 319  Q
    |||||| |||||||||| ||||||||||||||||||| |||||||||||  |   |||  |||   || |||||||||||||||||||||||||||||||    
T  26851200 aagttcactgagatttttaaatgaagatggcaattctcctatggaagtacgatgtaactcaatctcttctatatttgtcatcttgcataataattctgga 26851101  T
Q  320 aaactattgagactc 334  Q
    ||| | |||||||||    
T  26851100 aaattcttgagactc 26851086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 64 - 322
Target Start/End: Original strand, 27696067 - 27696322
Alignment:
Q  64 attaacaaaccacttgagaagtattggtaaacattcatctgagaggttgcaattttggagactaagctgtgtcacatttgaaaacactagagaattaatt 163  Q
    ||||||| ||||||||||||||||||| | ||||||||||||||||| |||||    ||||  ||||| ||||| ||||||||||||||  ||||  ||     
T  27696067 attaacacaccacttgagaagtattgggagacattcatctgagaggtagcaatcgaagagagaaagctttgtcatatttgaaaacactattgaatacatc 27696166  T
Q  164 ttgtcattatgttttcggaacctcagctttccacatctctctattgatatgtcattaagttcgctgagattttgaaatgaagatggcaattcttctatgg 263  Q
    || |||||||||| | ||||||||||  ||||| ||  |   | ||  |  |||| |||||| |||||||||||||||||| |||||| || | ||||||    
T  27696167 ttatcattatgttctgggaacctcaggattccatatgac---actgtgaactcatcaagttcactgagattttgaaatgaaaatggcagttttcctatgg 27696263  T
Q  264 aagtattaacaaacaaaatacgttttatatttgtcatcttgcataataattctggaaaa 322  Q
    || ||| ||  |    |||   |||||||| || |||||||||||||||||||||||||    
T  27696264 aaatataaaatatatcaatctcttttatatgtgccatcttgcataataattctggaaaa 27696322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 220 - 366
Target Start/End: Complemental strand, 25582238 - 25582092
Alignment:
Q  220 aagttcgctgagattttgaaatgaagatggcaattcttctatggaagtattaacaaacaaaatacgttttatatttgtcatcttgcataataattctgga 319  Q
    |||||| |||| ||||||||||||| |||||||||||||||||||| |   |   | |   |||  |||||||||| |||||||||||||||||||||||    
T  25582238 aagttcactgaaattttgaaatgaatatggcaattcttctatggaaatggcatatatcttgatatcttttatatttctcatcttgcataataattctgga 25582139  T
Q  320 aaactattgagactctcacaaaaagagagttccaattccttaagaga 366  Q
    ||| | ||||||||||||||   ||||| ||| |||| |||||||||    
T  25582138 aaattcttgagactctcacacttagagatttcaaatttcttaagaga 25582092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 43 - 145
Target Start/End: Complemental strand, 26625837 - 26625735
Alignment:
Q  43 cgataagtctagccttttcacattaacaaaccacttgagaagtattggtaaacattcatctgagaggttgcaattttggagactaagctgtgtcacattt 142  Q
    ||||||||||||   |||||||||||||||||||||||||| |||||| | | ||||||||||||||||||| |    ||||| ||||| ||||||||||    
T  26625837 cgataagtctagatgtttcacattaacaaaccacttgagaattattgggagatattcatctgagaggttgcattccctgagacaaagctctgtcacattt 26625738  T
Q  143 gaa 145  Q
    |||    
T  26625737 gaa 26625735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 43 - 145
Target Start/End: Complemental strand, 26731814 - 26731712
Alignment:
Q  43 cgataagtctagccttttcacattaacaaaccacttgagaagtattggtaaacattcatctgagaggttgcaattttggagactaagctgtgtcacattt 142  Q
    ||||||||||||   |||||||||||||||||||||||||| |||||| | | ||||||||||||||||||| |    ||||| ||||| ||||||||||    
T  26731814 cgataagtctagatgtttcacattaacaaaccacttgagaattattgggagatattcatctgagaggttgcattccctgagacaaagctctgtcacattt 26731715  T
Q  143 gaa 145  Q
    |||    
T  26731714 gaa 26731712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 26980101 - 26980049
Alignment:
Q  60 tcacattaacaaaccacttgagaagtattggtaaacattcatctgagaggttg 112  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  26980101 tcacattaacaaaccacttgagaagtattgggagacattcatctgagaggttg 26980049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 227 - 322
Target Start/End: Complemental strand, 25485505 - 25485410
Alignment:
Q  227 ctgagattttgaaatgaagatggcaattcttctatggaagtattaacaaacaaaatacgttttatatttgtcatcttgcataataattctggaaaa 322  Q
    |||| ||||||||||||| |||||||||||||||||||||||| |   | |  ||||  ||||||||||| |||||| ||||||||||||||||||    
T  25485505 ctgaaattttgaaatgaatatggcaattcttctatggaagtatcatatatcttaatatcttttatatttgacatcttacataataattctggaaaa 25485410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 60 - 195
Target Start/End: Complemental strand, 26058607 - 26058472
Alignment:
Q  60 tcacattaacaaaccacttgagaagtattggtaaacattcatctgagaggttgcaattttggagactaagctgtgtcacatttgaaaacactagagaatt 159  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||||| ||     |  |||  |||| |||  ||||||||||| |||||  |||||    
T  26058607 tcacattaacaaaccacttgagaagtattgggagacattcatctgagaggctgttgcctgcgaggttaagatgttccacatttgaaatcactattgaatt 26058508  T
Q  160 aattttgtcattatgttttcggaacctcagctttcc 195  Q
     ||||| ||||||| |||| ||||||| ||||||||    
T  26058507 cattttatcattatattttgggaacctgagctttcc 26058472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 60 - 195
Target Start/End: Complemental strand, 26078577 - 26078442
Alignment:
Q  60 tcacattaacaaaccacttgagaagtattggtaaacattcatctgagaggttgcaattttggagactaagctgtgtcacatttgaaaacactagagaatt 159  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||||| ||     |  |||  |||| |||  ||||||||||| |||||  |||||    
T  26078577 tcacattaacaaaccacttgagaagtattgggagacattcatctgagaggctgttgcctgcgaggttaagatgttccacatttgaaatcactattgaatt 26078478  T
Q  160 aattttgtcattatgttttcggaacctcagctttcc 195  Q
     ||||| ||||||| |||| ||||||| ||||||||    
T  26078477 cattttatcattatattttgggaacctgagctttcc 26078442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 60 - 109
Target Start/End: Complemental strand, 25582395 - 25582346
Alignment:
Q  60 tcacattaacaaaccacttgagaagtattggtaaacattcatctgagagg 109  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  25582395 tcacattaacaaaccacttgagaagtattgggagacattcatctgagagg 25582346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 215 - 368
Target Start/End: Complemental strand, 27681520 - 27681367
Alignment:
Q  215 tcattaagttcgctgagattttgaaatgaagatggcaattcttctatggaagtattaacaaacaaaatacgttttatatttgtcatcttgcataataatt 314  Q
    |||| |||||| |||||||||||||||||| |||||| |||| ||||||||||||||   |    |||   |||||||| || |||||||||||||||||    
T  27681520 tcatgaagttcactgagattttgaaatgaaaatggcagttctcctatggaagtattagatatatcaatctcttttatatgtgccatcttgcataataatt 27681421  T
Q  315 ctggaaaactattgagactctcacaaaaagagagttccaattccttaagagatg 368  Q
    |||||||| |||  |||| ||||||   | |||||  ||||| |||||||||||    
T  27681420 ctggaaaattatcaagacactcacactcatagagtatcaatttcttaagagatg 27681367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 111
Target Start/End: Complemental strand, 26961802 - 26961751
Alignment:
Q  60 tcacattaacaaaccacttgagaagtattggtaaacattcatctgagaggtt 111  Q
    |||||||||||||| |||||||||||||||| | ||||||||||||||||||    
T  26961802 tcacattaacaaacaacttgagaagtattgggagacattcatctgagaggtt 26961751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 220 - 330
Target Start/End: Complemental strand, 26864139 - 26864029
Alignment:
Q  220 aagttcgctgagattttgaaatgaagatggcaattcttctatggaagtattaacaaacaaaatacgttttatatttgtcatcttgcataataattctgga 319  Q
    |||||| |||||||||||||||||| ||| |||||||  ||||||||| | |   |||   ||   |||||||||| |||||||||||||||||||||||    
T  26864139 aagttcactgagattttgaaatgaaaatgacaattctcttatggaagtttcagacaaccggatctcttttatatttatcatcttgcataataattctgga 26864040  T
Q  320 aaactattgag 330  Q
    ||||| |||||    
T  26864039 aaactcttgag 26864029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 113
Target Start/End: Complemental strand, 26658675 - 26658620
Alignment:
Q  58 tttcacattaacaaaccacttgagaagtattggtaaacattcatctgagaggttgc 113  Q
    ||||||||||||| ||||||||||||||||||| | ||| ||||||||||| ||||    
T  26658675 tttcacattaacacaccacttgagaagtattggaagacagtcatctgagagattgc 26658620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 113
Target Start/End: Complemental strand, 26764646 - 26764591
Alignment:
Q  58 tttcacattaacaaaccacttgagaagtattggtaaacattcatctgagaggttgc 113  Q
    ||||||||||||| ||||||||||||||||||| | ||| ||||||||||| ||||    
T  26764646 tttcacattaacacaccacttgagaagtattggaagacagtcatctgagagattgc 26764591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 60 - 149
Target Start/End: Complemental strand, 26876265 - 26876176
Alignment:
Q  60 tcacattaacaaaccacttgagaagtattggtaaacattcatctgagaggttgcaattttggagactaagctgtgtcacatttgaaaaca 149  Q
    ||||||||||| ||||||||||||||| ||| | |||||||||||||| ||||  || || |||| | || |||  ||||||||||||||    
T  26876265 tcacattaacacaccacttgagaagtagtgggagacattcatctgagaagttgttatatttgagatttagatgttccacatttgaaaaca 26876176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 27681664 - 27681596
Alignment:
Q  44 gataagtctagccttttcacattaacaaaccacttgagaagtattggtaaacattcatctgagaggttg 112  Q
    |||||||||||   | ||| ||||||| |||||||||||| |||||| | |||||||||||||||||||    
T  27681664 gataagtctagatgtgtcatattaacacaccacttgagaactattgggagacattcatctgagaggttg 27681596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 58 - 105
Target Start/End: Complemental strand, 26638095 - 26638048
Alignment:
Q  58 tttcacattaacaaaccacttgagaagtattggtaaacattcatctga 105  Q
    |||||||||| || ||||||||||||||||||| | ||||||||||||    
T  26638095 tttcacattagcacaccacttgagaagtattgggagacattcatctga 26638048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 58 - 105
Target Start/End: Complemental strand, 26744061 - 26744014
Alignment:
Q  58 tttcacattaacaaaccacttgagaagtattggtaaacattcatctga 105  Q
    |||||||||| || ||||||||||||||||||| | ||||||||||||    
T  26744061 tttcacattagcacaccacttgagaagtattgggagacattcatctga 26744014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 228 - 267
Target Start/End: Complemental strand, 29828528 - 29828489
Alignment:
Q  228 tgagattttgaaatgaagatggcaattcttctatggaagt 267  Q
    ||||||||||||||||| |||||||||||| |||||||||    
T  29828528 tgagattttgaaatgaaaatggcaattcttttatggaagt 29828489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 366
Target Start/End: Complemental strand, 26658442 - 26658364
Alignment:
Q  288 ttatatttgtcatcttgcataataattctggaaaactattgagactctcacaaaaagagagttccaattccttaagaga 366  Q
    ||||||||| ||||||||||| ||||||||||||  | |||||||||| |||  ||  |||||  ||||||||||||||    
T  26658442 ttatatttgacatcttgcatagtaattctggaaatttcttgagactcttacaccaactgagttgaaattccttaagaga 26658364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 366
Target Start/End: Complemental strand, 26764413 - 26764335
Alignment:
Q  288 ttatatttgtcatcttgcataataattctggaaaactattgagactctcacaaaaagagagttccaattccttaagaga 366  Q
    ||||||||| ||||||||||| ||||||||||||  | |||||||||| |||  ||  |||||  ||||||||||||||    
T  26764413 ttatatttgacatcttgcatagtaattctggaaatttcttgagactcttacaccaactgagttgaaattccttaagaga 26764335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 26826596 - 26826528
Alignment:
Q  44 gataagtctagccttttcacattaacaaaccacttgagaagtattggtaaacattcatctgagaggttg 112  Q
    |||||||||||   | ||||||||||| |||||||||||| ||| || | |||| ||||||||||||||    
T  26826596 gataagtctagagatgtcacattaacacaccacttgagaaatatcgggagacatccatctgagaggttg 26826528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 44 - 368
Target Start/End: Complemental strand, 10242 - 9918
Alignment:
Q  44 gataagtctagccttttcacattaacaaaccacttgagaagtattggtaaacattcatctgagaggttgcaattttggagactaagctgtgtcacatttg 143  Q
    ||||||||||||  ||||||||||||| |||||||||||| |||||| | ||||||||||||||| |||||||| | ||||  ||| | |||||| ||||    
T  10242 gataagtctagcaatttcacattaacacaccacttgagaaatattgggagacattcatctgagagcttgcaattattgagaacaagatttgtcacttttg 10143  T
Q  144 aaaacactagagaattaattttgtcattatgttttcggaacctcagctttccacatctctctattgatatgtcattaagttcgctgagattttgaaatga 243  Q
    ||||||||| |||||  ||||  ||||| |||||| ||||||||||| ||||||||  |  ||  | ||  | |  ||||||  ||||||||||||||||    
T  10142 aaaacactatagaatacatttgatcattctgttttgggaacctcagcattccacattcccatagcgttaactgaaaaagttcattgagattttgaaatga 10043  T
Q  244 agatggcaattcttctatggaagtattaacaaacaaaatacgtttt-atatttgtcatcttgcataataattctggaaaactattgagactctcacaaaa 342  Q
    |||||||||||||  ||||||||| ||    ||| |||| |||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||| |    
T  10042 agatggcaattctcttatggaagttttctgcaaccaaat-cgttttcatatttgtcatcttgcataataattttggaaaactcttgagactctcacaata 9944  T
Q  343 agagagttccaattccttaagagatg 368  Q
    |||||  | |||||| ||||| ||||    
T  9943 agagatattcaattcattaagggatg 9918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 99; Significance: 9e-49; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 64 - 368
Target Start/End: Complemental strand, 15969 - 15668
Alignment:
Q  64 attaacaaaccacttgagaagtattggtaaacattcatctgagaggttgcaattttggagactaagctgtgtcacatttgaaaacactagagaattaatt 163  Q
    ||||||| |||||||||||| | || | | |||||||||||||||||||||||  | |||| |||||||||||||||||||||||||||  ||||  ||     
T  15969 attaacacaccacttgagaactcttcggagacattcatctgagaggttgcaatggtagagagtaagctgtgtcacatttgaaaacactattgaatacatc 15870  T
Q  164 ttgtcattatgttttcggaacctcagctttccacatctctctattgatatgtcattaagttcgctgagattttgaaatgaagatggcaattcttctatgg 263  Q
    || ||||| |||||| ||||||||||| ||||| || || ||   ||||  | || |||||| || ||||||||||||||| |||||| |||| ||||||    
T  15869 ttatcattctgttttgggaacctcagcattccatatgtcact---gataacttatgaagttcactaagattttgaaatgaaaatggcagttctcctatgg 15773  T
Q  264 aagtattaacaaacaaaatacgttttatatttgtcatcttgcataataattctggaaaactattgagactctcacaaaaagagagttccaattccttaag 363  Q
    ||||||||   ||| |||||   | |||||||||||||||||||||||||||||||||||| |||||||||   ||| ||  ||| | ||||||||||||    
T  15772 aagtattacacaaccaaatattgtctatatttgtcatcttgcataataattctggaaaactcttgagactcctgcaagaactgagattcaattccttaag 15673  T
Q  364 agatg 368  Q
    |||||    
T  15672 agatg 15668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 44 - 368
Target Start/End: Original strand, 2144 - 2468
Alignment:
Q  44 gataagtctagccttttcacattaacaaaccacttgagaagtattggtaaacattcatctgagaggttgcaattttggagactaagctgtgtcacatttg 143  Q
    |||||||||||   | ||||||||||| |||||||||||| |||||| | ||||||||||||||| |||||||  |||||| |||| | |||||| ||||    
T  2144 gataagtctagagatgtcacattaacacaccacttgagaaatattgggagacattcatctgagagcttgcaatcatggagaataagatttgtcacttttg 2243  T
Q  144 aaaacactagagaattaattttgtcattatgttttcggaacctcagctttccacatctctctattgatatgtcattaagttcgctgagattttgaaatga 243  Q
    ||||||||| |||||  ||||  ||||| |||||| ||||||||||| ||||||||  |  ||  | ||    |  ||||||  ||||||||||||||||    
T  2244 aaaacactatagaatacatttgatcattctgttttgggaacctcagcattccacattcccatagcgttaacagaaaaagttcattgagattttgaaatga 2343  T
Q  244 agatggcaattcttctatggaagtattaacaaacaaaatacgttttatatttgtcatcttgcataataattctggaaaactattgagactctcacaaaaa 343  Q
    |||||||||||||  ||||||||| ||    ||| ||||   ||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||    
T  2344 agatggcaattctcttatggaagttttctgcaaccaaatcattttcatatttgtcatcttgcataataattttggaaaactcttgagactctcacaataa 2443  T
Q  344 gagagttccaattccttaagagatg 368  Q
    ||||  | |||||| ||||| ||||    
T  2444 gagatattcaattcattaagggatg 2468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 60 - 368
Target Start/End: Original strand, 11123 - 11431
Alignment:
Q  60 tcacattaacaaaccacttgagaagtattggtaaacattcatctgagaggttgcaattttggagactaagctgtgtcacatttgaaaacactagagaatt 159  Q
    |||||| |||| |||||||||||| |||||| | ||||||||||||||| |||||||| | |||    || | |||||| ||||||||||||| |||||     
T  11123 tcacataaacacaccacttgagaaatattgggagacattcatctgagagcttgcaattatagagttctagttttgtcacttttgaaaacactatagaata 11222  T
Q  160 aattttgtcattatgttttcggaacctcagctttccacatctctctattgatatgtcattaagttcgctgagattttgaaatgaagatggcaattcttct 259  Q
     ||||  ||||| |||||| ||||||||||| |||||  |  |  || || ||  |||| |||||| ||||||||||||||||||||||||||||||  |    
T  11223 catttgatcattctgttttgggaacctcagcattccagcttcccgtactgttaactcatgaagttcactgagattttgaaatgaagatggcaattctctt 11322  T
Q  260 atggaagtattaacaaacaaaatacgttttatatttgtcatcttgcataataattctggaaaactattgagactctcacaaaaagagagttccaattcct 359  Q
    |||||||||||    ||| ||||   ||| ||||||||||||||||||||||||| ||||||||| ||||||||| |||||  |||||| | |||||| |    
T  11323 atggaagtattctgcaaccaaatctttttaatatttgtcatcttgcataataattttggaaaactcttgagactcccacaatgagagagattcaattcat 11422  T
Q  360 taagagatg 368  Q
    |||| ||||    
T  11423 taagggatg 11431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 60 - 368
Target Start/End: Original strand, 29271311 - 29271616
Alignment:
Q  60 tcacattaacaaaccacttgagaagtattggtaaacattcatctgagaggttgcaattttggagactaagctgtgtcacatttgaaaacactagagaatt 159  Q
    ||||||||||| ||||||||||||||||||| | |||||||||||||| || |||||  | |||| |||| |||||||||||||  |||||||  ||||     
T  29271311 tcacattaacacaccacttgagaagtattgggagacattcatctgagaagtcgcaatcgtcgagagtaagatgtgtcacatttgggaacactattgaata 29271410  T
Q  160 aattttgtcattatgttttcggaacctcagctttccacatctctctattgatatgtcattaagttcgctgagattttgaaatgaagatggcaattcttct 259  Q
     || || |||||||||||| |||| |||||| |||||  | || ||   ||||  |||| |||||| |||||||||||||||||| |||| | |||| |     
T  29271411 catcttatcattatgttttgggaagctcagcattccagctttcact---gataactcatgaagttcactgagattttgaaatgaaaatggaagttctgca 29271507  T
Q  260 atggaagtattaacaaacaaaatacgttttatatttgtcatcttgcataataattctggaaaactattgagactctcacaaaaagagagttccaattcct 359  Q
    ||| |||||| |   |||||||||   | ||||||| |||||||||||||||||||||||||||||| ||||||| |||||  |  ||| | ||||||||    
T  29271508 atgaaagtatgatgcaacaaaatattgtctatatttttcatcttgcataataattctggaaaactatcgagactcacacaaccactgagattcaattcct 29271607  T
Q  360 taagagatg 368  Q
    |||||||||    
T  29271608 taagagatg 29271616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 17 - 324
Target Start/End: Complemental strand, 22024007 - 22023704
Alignment:
Q  17 ggaagaatattgaaattgaagttatgcgataagtctagccttttcacattaacaaaccacttgagaagtattggtaaacattcatctgagaggttgca-- 114  Q
    |||||||| |||||||||   |||| ||||||||||||| |   || ||||||| | |||||||||| |||||| |  ||||||||  ||||||||||      
T  22024007 ggaagaattttgaaattg---ttattcgataagtctagcgtaaccatattaacacaacacttgagaaatattgggaggcattcatcaaagaggttgcagc 22023911  T
Q  115 -attttggagactaagctgtgtcacatttgaaaacactagagaattaattttgtcattatgttttcggaacctcagctttccacatctctctattgatat 213  Q
     || | |||||||||||| ||||||||||| |||||||| ||||| |||||| ||||||| |||| |||| || |   ||||||||| |  || |    |    
T  22023910 aatctcggagactaagctctgtcacatttggaaacactatagaataaattttatcattatattttgggaaactgaatattccacatccccatagt----t 22023815  T
Q  214 gtcattaagttcgctgagattttgaaatgaagatggcaattcttctatggaagtattaacaaacaaaatacgttttatatttgtcatcttgcataataat 313  Q
    |  || |||||  |||||||||||||| |||||||||||||||  |||||||||||||   ||| |||||  || ||||||| |||||||||||||||||    
T  22023814 gcgataaagtttactgagattttgaaaagaagatggcaattctcttatggaagtattatacaacgaaatatattctatatttttcatcttgcataataat 22023715  T
Q  314 tctggaaaact 324  Q
    | |||||||||    
T  22023714 tttggaaaact 22023704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 31907849 - 31907793
Alignment:
Q  58 tttcacattaacaaaccacttgagaagtattggtaaacattcatctgagaggttgca 114  Q
    ||||||||||||||||||  |||||| |||||| | | ||||||||||||| |||||    
T  31907849 tttcacattaacaaaccatgtgagaattattggaacaaattcatctgagagattgca 31907793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 5e-38; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 60 - 366
Target Start/End: Original strand, 265803 - 266106
Alignment:
Q  60 tcacattaacaaaccacttgagaagtattggtaaacattcatctgagaggttgcaattttggagactaagctgtgtcacatttgaaaacactagagaatt 159  Q
    ||||||||||| ||||||||||||||||||| | ||||||||||||||| |||  ||||  |||   |||   | | ||||| |||||||||| |||||     
T  265803 tcacattaacacaccacttgagaagtattgggagacattcatctgagagattgttatttacgagtgaaagagcttttacattggaaaacactatagaata 265902  T
Q  160 aattttgtcattatgttttcggaacctcagctttccacatctctctattgatatgtcattaagttcgctgagattttgaaatgaagatggcaattcttct 259  Q
     |||||  ||||||||||| |||||| ||   |||||| || ||||| |||||    |  |||| | ||||||||||||||||||||||||||||||  |    
T  265903 cattttcccattatgttttgggaaccgca---ttccacgtccctctagtgataaccgagaaagtccactgagattttgaaatgaagatggcaattctctt 265999  T
Q  260 atggaagtattaacaaacaaaatacgttttatatttgtcatcttgcataataattctggaaaactattgagactctcacaaaaagagagttccaattcct 359  Q
    |||||||| | |   |||||||||  || |||||||||||||||||||||||||| |||||| ||||||||||||  |||   ||||||||||| |||||    
T  266000 atggaagtttcatacaacaaaatattttctatatttgtcatcttgcataataattttggaaagctattgagactccaacacccagagagttccatttcct 266099  T
Q  360 taagaga 366  Q
    |||||||    
T  266100 taagaga 266106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 220 - 364
Target Start/End: Original strand, 28125322 - 28125466
Alignment:
Q  220 aagttcgctgagattttgaaatgaagatggcaattcttctatggaagtattaacaaacaaaatacgttttatatttgtcatcttgcataataattctgga 319  Q
    |||||| |||||||||||||||||| |||| ||||||  |||||||||   |   ||| ||||   || ||||||||||||||||| |||||||||||||    
T  28125322 aagttcactgagattttgaaatgaaaatggtaattctcttatggaagttccacgcaaccaaatctcttctatatttgtcatcttgcctaataattctgga 28125421  T
Q  320 aaactattgagactctcacaaaaagagagttccaattccttaaga 364  Q
    ||||| ||||||||||||||   |  ||||| |||||||||||||    
T  28125422 aaactcttgagactctcacattcactgagtttcaattccttaaga 28125466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 220 - 366
Target Start/End: Complemental strand, 26138465 - 26138319
Alignment:
Q  220 aagttcgctgagattttgaaatgaagatggcaattcttctatggaagtattaacaaacaaaatacgttttatatttgtcatcttgcataataattctgga 319  Q
    |||||| |||| ||||||||||||| ||||||||||| ||||||| ||   |   ||| ||||   |||||||||||||| | | |  | ||||||||||    
T  26138465 aagttcactgaaattttgaaatgaaaatggcaattctcctatggaggttccatacaaccaaatgtcttttatatttgtcaacctaccaactaattctgga 26138366  T
Q  320 aaactattgagactctcacaaaaagagagttccaattccttaagaga 366  Q
    ||||| |||||||||| ||||| |||||||||||||| |||||||||    
T  26138365 aaactcttgagactcttacaaatagagagttccaatttcttaagaga 26138319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 366
Target Start/End: Original strand, 28130353 - 28130499
Alignment:
Q  220 aagttcgctgagattttgaaatgaagatggcaattcttctatggaagtattaacaaacaaaatacgttttatatttgtcatcttgcataataattctgga 319  Q
    |||||| || ||||||||||||||| |||| ||||||  ||||||||| | |   |||  |||   || ||||||||||| ||||| |||||||||||||    
T  28130353 aagttcacttagattttgaaatgaaaatggtaattctcttatggaagtttcactcaacctaatctcttgtatatttgtcaacttgcctaataattctgga 28130452  T
Q  320 aaactattgagactctcacaaaaagagagttccaattccttaagaga 366  Q
    ||  | ||||||||||||||      |||||||||||||||||||||    
T  28130453 aattttttgagactctcacattccctgagttccaattccttaagaga 28130499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 220 - 354
Target Start/End: Complemental strand, 62138 - 62004
Alignment:
Q  220 aagttcgctgagattttgaaatgaagatggcaattcttctatggaagtattaacaaacaaaatacgttttatatttgtcatcttgcataataattctgga 319  Q
    |||||| || ||||||||||| ||| |||| |||||| |||||||||| |     ||||| |||  ||||||||||||||||||||||||||||||||||    
T  62138 aagttcactaagattttgaaaggaaaatggaaattctcctatggaagtttccttcaacaagatagattttatatttgtcatcttgcataataattctgga 62039  T
Q  320 aaactattgagactctcacaaaaagagagttccaa 354  Q
    ||||| |||||||||| ||||  ||||||||||||    
T  62038 aaactcttgagactcttacaattagagagttccaa 62004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 7e-25; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 220 - 354
Target Start/End: Complemental strand, 18076330 - 18076196
Alignment:
Q  220 aagttcgctgagattttgaaatgaagatggcaattcttctatggaagtattaacaaacaaaatacgttttatatttgtcatcttgcataataattctgga 319  Q
    |||||| || ||||||||||| ||| |||| |||||| |||||||||| |     ||||| |||  ||||||||||||||||||||||||||||||||||    
T  18076330 aagttcactaagattttgaaaggaaaatggaaattctcctatggaagtttccttcaacaagatagattttatatttgtcatcttgcataataattctgga 18076231  T
Q  320 aaactattgagactctcacaaaaagagagttccaa 354  Q
    ||||| |||||||||| ||||  ||||||||||||    
T  18076230 aaactcttgagactcttacaattagagagttccaa 18076196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 286 - 366
Target Start/End: Original strand, 18677291 - 18677371
Alignment:
Q  286 ttttatatttgtcatcttgcataataattctggaaaactattgagactctcacaaaaagagagttccaattccttaagaga 366  Q
    |||| ||||||||||||| |||||||||||||||||||| ||||| |||| |||||||||||| ||||||||||| |||||    
T  18677291 ttttgtatttgtcatcttacataataattctggaaaactcttgagtctcttacaaaaagagaggtccaattccttcagaga 18677371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 286 - 366
Target Start/End: Original strand, 18721805 - 18721885
Alignment:
Q  286 ttttatatttgtcatcttgcataataattctggaaaactattgagactctcacaaaaagagagttccaattccttaagaga 366  Q
    |||| ||||||||||||| ||||||| |||||||||||| ||||| ||||||||||||||||| |||||||||| ||||||    
T  18721805 ttttgtatttgtcatcttacataatagttctggaaaactcttgagtctctcacaaaaagagaggtccaattcctcaagaga 18721885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 286 - 366
Target Start/End: Original strand, 18729227 - 18729307
Alignment:
Q  286 ttttatatttgtcatcttgcataataattctggaaaactattgagactctcacaaaaagagagttccaattccttaagaga 366  Q
    |||| ||||||||||||| |||||||||||||||||||| ||||| |||| |||| ||| ||| |||||||||||||||||    
T  18729227 ttttgtatttgtcatcttacataataattctggaaaactcttgagtctcttacaataagtgaggtccaattccttaagaga 18729307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 286 - 366
Target Start/End: Original strand, 18653209 - 18653289
Alignment:
Q  286 ttttatatttgtcatcttgcataataattctggaaaactattgagactctcacaaaaagagagttccaattccttaagaga 366  Q
    |||| ||||||||||||| ||||||| |||||||||||  ||||| |||| |||| ||||||  |||||||||||||||||    
T  18653209 ttttgtatttgtcatcttacataatagttctggaaaacacttgagtctcttacaataagagacgtccaattccttaagaga 18653289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 286 - 366
Target Start/End: Original strand, 18687346 - 18687426
Alignment:
Q  286 ttttatatttgtcatcttgcataataattctggaaaactattgagactctcacaaaaagagagttccaattccttaagaga 366  Q
    |||| ||||||||||||| |||||||||||||||||||| ||||| |||  |||| ||||||  ||||||||||| |||||    
T  18687346 ttttgtatttgtcatcttacataataattctggaaaactcttgagtctcctacaataagagatgtccaattccttcagaga 18687426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 286 - 366
Target Start/End: Original strand, 18697134 - 18697214
Alignment:
Q  286 ttttatatttgtcatcttgcataataattctggaaaactattgagactctcacaaaaagagagttccaattccttaagaga 366  Q
    |||| ||||||||||||| |||||||||||||||||||| ||||| |||  |||| ||||||  ||||||||||| |||||    
T  18697134 ttttgtatttgtcatcttacataataattctggaaaactcttgagtctcctacaataagagatgtccaattccttcagaga 18697214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 267
Target Start/End: Original strand, 18682390 - 18682431
Alignment:
Q  226 gctgagattttgaaatgaagatggcaattcttctatggaagt 267  Q
    ||||||||||||||||||| |||||||||||  |||||||||    
T  18682390 gctgagattttgaaatgaaaatggcaattctcttatggaagt 18682431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 267
Target Start/End: Original strand, 18726666 - 18726707
Alignment:
Q  226 gctgagattttgaaatgaagatggcaattcttctatggaagt 267  Q
    ||||||||||||||||||| |||||||||||  |||||||||    
T  18726666 gctgagattttgaaatgaaaatggcaattctcttatggaagt 18726707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 212
Target Start/End: Original strand, 18726588 - 18726664
Alignment:
Q  136 cacatttgaaaacactagagaattaattttgtcattatgttttcggaacctcagctttccacatctctctattgata 212  Q
    |||||||||||||| ||  ||||  ||||| |||||||||||| ||||||| ||| || |||||| || ||||||||    
T  18726588 cacatttgaaaacattattgaatacattttatcattatgttttgggaacctgagcatttcacatccctgtattgata 18726664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 227 - 324
Target Start/End: Original strand, 17990855 - 17990952
Alignment:
Q  227 ctgagattttgaaatgaagatggcaattcttctatggaagtattaacaaacaaaatacgttttatatttgtcatcttgcataataattctggaaaact 324  Q
    |||||||||||||||||| ||||||||||| |||||||| |||   | ||| ||||| ||| ||| ||||||||||||||||||||||||||||||||    
T  17990855 ctgagattttgaaatgaaaatggcaattctcctatggaactatctgccaaccaaatatgttctatctttgtcatcttgcataataattctggaaaact 17990952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1870 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold1870
Description:

Target: scaffold1870; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 290 - 368
Target Start/End: Complemental strand, 1277 - 1199
Alignment:
Q  290 atatttgtcatcttgcataataattctggaaaactattgagactctcacaaaaagagagttccaattccttaagagatg 368  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||  | |||||| ||||| ||||    
T  1277 atatttgtcatcttgcataataattttggaaaactcttgagactctcacaataagagatattcaattcattaagggatg 1199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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