View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16991_low_31 (Length: 374)
Name: NF16991_low_31
Description: NF16991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16991_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 45447717 - 45448076
Alignment:
| Q |
1 |
acttagtaccgattatatgtgtttatctttttcggattataaaattgaaaaaacatctagactacaagtaacaccagcaaaagatgcaggatttgaccat |
100 |
Q |
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| T |
45447717 |
acttagtaccgattatatgtgtttatctttttcggattataaaattaaaaaaacgtctggactacaagtaacaccagcaaaagatgcaggatttgaccat |
45447816 |
T |
|
| Q |
101 |
tgaaaatataaataattatatcaaaatatcagtatatatacaaatgaattttgttccctaatcatatacaatgagctaatcttttacgaggtctatggta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
45447817 |
tgaaaatataaataattatatcaaaatatcagtatatatacaaatgagttttgttccctaatcatatacaatgagctaatcttttacgagatctatggta |
45447916 |
T |
|
| Q |
201 |
tcatattccacactctaaaggttatcatcttcaactttgataacatgttcaactttcttatcatcttcatccttgctaaggttttcaattatcatcacat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
45447917 |
tcatattccacactctaaaggttatcatcttcaactttgataacatgttcaactttcttatcatcttcatccttgccaaggttttcaatcatcatcacat |
45448016 |
T |
|
| Q |
301 |
agcagaatcaactgatggtgcttcaaaaacacattaggaggagccacatatgttggtctt |
360 |
Q |
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| T |
45448017 |
agtagaatcaactgatggtgcttcaaaaacacaccaggaggagccacatatgttggtctt |
45448076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 140
Target Start/End: Complemental strand, 40279424 - 40279387
Alignment:
| Q |
103 |
aaaatataaataattatatcaaaatatcagtatatata |
140 |
Q |
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| T |
40279424 |
aaaatatagataattatatcaaaatatcactatatata |
40279387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 170
Target Start/End: Original strand, 4040008 - 4040089
Alignment:
| Q |
84 |
atgcaggatttgaccattgaaaatataaataattatatcaaaatatcagtatatatacaaatgaattttgttccctaatcatataca |
170 |
Q |
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| T |
4040008 |
atgcaggatttgactaataaaaacatagataattatattaaaatatcagtatat-----aatgtgttttgttccctaatcatataca |
4040089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 263
Target Start/End: Complemental strand, 43239628 - 43239509
Alignment:
| Q |
143 |
aatgaattttgttccctaatcatataca-atgagctaatcttttacgaggtctatggtatcatattccacactctaaaggttatcatcttcaactttgat |
241 |
Q |
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| T |
43239628 |
aatgatttttgttccctaatcataaacatttgaactaatagttggcgatgtctatggtatcatat--gacactcttaagactatcattttcacctttgac |
43239531 |
T |
|
| Q |
242 |
aacatgttcaactttcttatca |
263 |
Q |
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||||| |||||| ||||||||| |
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| T |
43239530 |
aacattttcaaccttcttatca |
43239509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 13366270 - 13366310
Alignment:
| Q |
248 |
ttcaactttcttatcatcttcatccttgctaaggttttcaa |
288 |
Q |
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||||||||||||||||||||||||||| | ||||| ||||| |
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| T |
13366270 |
ttcaactttcttatcatcttcatccttcccaaggtcttcaa |
13366310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 300
Target Start/End: Complemental strand, 6023690 - 6023641
Alignment:
| Q |
251 |
aactttcttatcatcttcatccttgctaaggttttcaattatcatcacat |
300 |
Q |
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|||||||||||||||||||||||| ||||||||||| ||||| ||||| |
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| T |
6023690 |
aactttcttatcatcttcatccttctaaaggttttcaactatcaccacat |
6023641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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