View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16991_low_33 (Length: 358)
Name: NF16991_low_33
Description: NF16991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16991_low_33 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 3 - 341
Target Start/End: Original strand, 9186327 - 9186667
Alignment:
| Q |
3 |
aagattattcatgatctcaatacttaatgatcatatttatgccaacaaattagaatcattatacatcttctaacaatatagaacctggacttatgctcct |
102 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9186327 |
aagattattcatgatctcaatactta-tgatcatatttatgccaacaaattagaatcattatacatcttctaacaatatagaacctggacttatgctcct |
9186425 |
T |
|
| Q |
103 |
ttaccatagcaaaacatcc------atgcctttgtgaataaacagattctcctccaccatcacctccaacctctcctccgctatgaatttttctacgtga |
196 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9186426 |
ttaccatagcaaaacatcctccaccatgcctttgtgaataaacagattctcctccaccatcacctccaacctctcctccgctatgaatttttctacgtga |
9186525 |
T |
|
| Q |
197 |
tgcacattgacccatccaaatgaaataaaactatactatatgaatcacaaatatacaataactgaaataaacaaaacagcttgatagcagcagattatgt |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
9186526 |
tgcacattgacccatccaaatgaaataaaactatactatatgaatcacaaatatacaataactgaaataaacaaaacagcttgat---agcagattatgt |
9186622 |
T |
|
| Q |
297 |
ttcttgaactcttctacgtaattgattttatcttcttgagcttct |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9186623 |
ttcttgaactcttctacgtaattgattttatcttcttgagcttct |
9186667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University