View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16991_low_35 (Length: 347)

Name: NF16991_low_35
Description: NF16991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16991_low_35
NF16991_low_35
[»] chr1 (8 HSPs)
chr1 (7-238)||(43284020-43284246)
chr1 (276-336)||(43284284-43284344)
chr1 (18-73)||(4806796-4806851)
chr1 (16-50)||(15670641-15670675)
chr1 (7-77)||(32870245-32870315)
chr1 (16-77)||(13401598-13401659)
chr1 (29-77)||(3573336-3573384)
chr1 (19-59)||(18654841-18654881)
[»] chr7 (6 HSPs)
chr7 (13-77)||(23221393-23221457)
chr7 (16-77)||(25251511-25251572)
chr7 (16-77)||(38779981-38780042)
chr7 (16-73)||(27279402-27279459)
chr7 (16-77)||(40187635-40187696)
chr7 (16-48)||(45151407-45151439)
[»] chr4 (7 HSPs)
chr4 (13-73)||(50668345-50668405)
chr4 (16-68)||(25198260-25198312)
chr4 (19-77)||(52936642-52936700)
chr4 (18-67)||(31890753-31890802)
chr4 (16-77)||(39489607-39489668)
chr4 (18-46)||(7513035-7513063)
chr4 (33-77)||(21729143-21729187)
[»] chr8 (6 HSPs)
chr8 (13-75)||(18422449-18422511)
chr8 (16-77)||(3650521-3650582)
chr8 (38-77)||(42541868-42541907)
chr8 (11-48)||(33373746-33373783)
chr8 (20-72)||(1230664-1230716)
chr8 (13-73)||(24202156-24202215)
[»] scaffold0053 (1 HSPs)
scaffold0053 (20-73)||(14205-14258)
[»] chr3 (3 HSPs)
chr3 (20-77)||(29791777-29791834)
chr3 (14-55)||(55395321-55395362)
chr3 (7-48)||(49025063-49025104)
[»] chr2 (5 HSPs)
chr2 (16-77)||(27412835-27412896)
chr2 (16-77)||(29896293-29896354)
chr2 (16-50)||(12126897-12126931)
chr2 (16-48)||(5028886-5028918)
chr2 (18-50)||(32407564-32407596)
[»] chr6 (2 HSPs)
chr6 (13-65)||(13584352-13584404)
chr6 (16-77)||(9311929-9311990)
[»] chr5 (4 HSPs)
chr5 (22-77)||(26675951-26676006)
chr5 (22-77)||(26947559-26947614)
chr5 (7-77)||(12297596-12297665)
chr5 (16-48)||(29695045-29695077)
[»] scaffold1120 (1 HSPs)
scaffold1120 (15-76)||(1915-1976)
[»] scaffold0027 (1 HSPs)
scaffold0027 (17-73)||(42730-42786)


Alignment Details
Target: chr1 (Bit Score: 180; Significance: 4e-97; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 7 - 238
Target Start/End: Original strand, 43284020 - 43284246
Alignment:
Q  7 ttttttgttggggtttgaaccacaaaccttacatatattatgtaatgtttctactaactgaattaagctcaagtaataatatcatgaagacaacacatga 106  Q
    ||||||||| |||||||||||||||||||||||||||||||  | ||| |||||||||||| |||||||||||||||||||||||||||||||| | |||    
T  43284020 ttttttgttagggtttgaaccacaaaccttacatatattatacattgtctctactaactgagttaagctcaagtaataatatcatgaagacaacgcgtga 43284119  T
Q  107 tatgaatccattgatctacacacaatttgatacatattcccgaactatcatggtttacttaggattgctaaactaaattaaactatagaaacatgatcta 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||    
T  43284120 tatgaatccattgatctacacacaatttgatacatattcccgaactatcatggtttacttaggattgctaaac-----taaactatagaaacatgatcta 43284214  T
Q  207 atattctttatgatatcttattatcttaggta 238  Q
    ||||||||||||||||||||||||||||||||    
T  43284215 atattctttatgatatcttattatcttaggta 43284246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 276 - 336
Target Start/End: Original strand, 43284284 - 43284344
Alignment:
Q  276 gggagggtgaaatatagaaaacagtagttttgatgagtgataacttactccactgcccttt 336  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43284284 gggagggtgaaatatagaaaacagtagttttgatgagtgataacttactccactgcccttt 43284344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 4806796 - 4806851
Alignment:
Q  18 ggtttgaaccacaaaccttacatatattatgtaatgtttctactaactgaattaag 73  Q
    |||||||||| |||||||||||||||||||  | ||| ||||| ||||||||||||    
T  4806796 ggtttgaacctcaaaccttacatatattatacattgtctctaccaactgaattaag 4806851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 15670641 - 15670675
Alignment:
Q  16 ggggtttgaaccacaaaccttacatatattatgta 50  Q
    |||||||||||| ||||||||||||||||||||||    
T  15670641 ggggtttgaaccccaaaccttacatatattatgta 15670675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 32870315 - 32870245
Alignment:
Q  7 ttttttgttggggtttgaaccacaaaccttacatatattatgtaatgtttctactaactgaattaagctca 77  Q
    ||||||||  |||||||||||||  |||||||||||||||| ||   ||||||| ||| ||||||||||||    
T  32870315 ttttttgtgagggtttgaaccacggaccttacatatattatatatcatttctaccaaccgaattaagctca 32870245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 13401659 - 13401598
Alignment:
Q  16 ggggtttgaaccacaaaccttacatatattatgtaatgtttctactaactgaattaagctca 77  Q
    |||||||||||| | |||||||||||||||||| | ||| ||||  ||||||| ||||||||    
T  13401659 ggggtttgaaccccgaaccttacatatattatgcattgtctctatcaactgaactaagctca 13401598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 3573336 - 3573384
Alignment:
Q  29 caaaccttacatatattatgtaatgtttctactaactgaattaagctca 77  Q
    |||||||||||||||||||| | |||| |||| |||||| |||||||||    
T  3573336 caaaccttacatatattatgcattgttcctaccaactgagttaagctca 3573384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 18654881 - 18654841
Alignment:
Q  19 gtttgaaccacaaaccttacatatattatgtaatgtttcta 59  Q
    |||||||||||||||||| ||||||||||||| | ||||||    
T  18654881 gtttgaaccacaaaccttgcatatattatgtattttttcta 18654841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 23221457 - 23221393
Alignment:
Q  13 gttggggtttgaaccacaaaccttacatatattatgtaatgtttctactaactgaattaagctca 77  Q
    ||||| ||||||||||| |||||||||||||||||| | ||| ||||| |||||| |||||||||    
T  23221457 gttggagtttgaaccacgaaccttacatatattatgcattgtctctaccaactgagttaagctca 23221393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 25251572 - 25251511
Alignment:
Q  16 ggggtttgaaccacaaaccttacatatattatgtaatgtttctactaactgaattaagctca 77  Q
    |||||||||||| ||||||||| |||||||||| | ||||| ||| |||||| |||||||||    
T  25251572 ggggtttgaaccccaaaccttatatatattatgcattgtttataccaactgagttaagctca 25251511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 38780042 - 38779981
Alignment:
Q  16 ggggtttgaaccacaaaccttacatatattatgtaatgtttctactaactgaattaagctca 77  Q
    |||||||||| | ||||||||||||||||||| || |||| |||| |||||| |||||||||    
T  38780042 ggggtttgaatcccaaaccttacatatattatttattgttcctaccaactgagttaagctca 38779981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 27279402 - 27279459
Alignment:
Q  16 ggggtttgaaccacaaaccttacatatattatgtaatgtttctactaactgaattaag 73  Q
    |||||||||||| |||||||||||||||||||  | ||| | ||||||||||| ||||    
T  27279402 ggggtttgaacctcaaaccttacatatattatacattgtctatactaactgaactaag 27279459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 40187635 - 40187696
Alignment:
Q  16 ggggtttgaaccacaaaccttacatatattatgtaatgtttctactaactgaattaagctca 77  Q
    |||||||||||| || ||||||||||||||||| | |||  |||| |||||| |||||||||    
T  40187635 ggggtttgaaccgcagaccttacatatattatgcattgtccctaccaactgagttaagctca 40187696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 45151439 - 45151407
Alignment:
Q  16 ggggtttgaaccacaaaccttacatatattatg 48  Q
    |||||||||||| ||||||||||||||||||||    
T  45151439 ggggtttgaaccccaaaccttacatatattatg 45151407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 50668405 - 50668345
Alignment:
Q  13 gttggggtttgaaccacaaaccttacatatattatgtaatgtttctactaactgaattaag 73  Q
    ||||||||||||||| | |||||||||||||||||||| ||||  ||| ||||||||||||    
T  50668405 gttggggtttgaaccccgaaccttacatatattatgtattgttcataccaactgaattaag 50668345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 25198260 - 25198312
Alignment:
Q  16 ggggtttgaaccacaaaccttacatatattatgtaatgtttctactaactgaa 68  Q
    |||||||||||| |  ||||||||||||||||||| |||| ||||||||||||    
T  25198260 ggggtttgaacctccgaccttacatatattatgtattgttcctactaactgaa 25198312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 52936700 - 52936642
Alignment:
Q  19 gtttgaaccacaaaccttacatatattatgtaatgtttctactaactgaattaagctca 77  Q
    ||||||||| |||||||||||||||||||  | ||||||||  |||||| |||||||||    
T  52936700 gtttgaacctcaaaccttacatatattatacattgtttctatcaactgagttaagctca 52936642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 31890802 - 31890753
Alignment:
Q  18 ggtttgaaccacaaaccttacatatattatgtaatgtttctactaactga 67  Q
    |||||||||| ||| ||||||||| ||||||||||||| |||| ||||||    
T  31890802 ggtttgaaccccaacccttacataaattatgtaatgttcctaccaactga 31890753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 39489668 - 39489607
Alignment:
Q  16 ggggtttgaaccacaaaccttacatatattatgtaatgtttctactaactgaattaagctca 77  Q
    |||||||||||| | |||||| |||||| |||||| |||| |||  ||||||||||||||||    
T  39489668 ggggtttgaaccccgaaccttgcatatactatgtattgttcctatcaactgaattaagctca 39489607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 7513035 - 7513063
Alignment:
Q  18 ggtttgaaccacaaaccttacatatatta 46  Q
    |||||||||||||||||||||||||||||    
T  7513035 ggtttgaaccacaaaccttacatatatta 7513063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 21729187 - 21729143
Alignment:
Q  33 ccttacatatattatgtaatgtttctactaactgaattaagctca 77  Q
    ||||||||||||||||||||||| ||| ||||||| |||| ||||    
T  21729187 ccttacatatattatgtaatgttcctattaactgagttaaactca 21729143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 18422449 - 18422511
Alignment:
Q  13 gttggggtttgaaccacaaaccttacatatattatgtaatgtttctactaactgaattaagct 75  Q
    ||||||||||||| | | |||||||||||||||||| | ||||||||  ||||||||||||||    
T  18422449 gttggggtttgaatcccgaaccttacatatattatgcattgtttctatcaactgaattaagct 18422511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 3650582 - 3650521
Alignment:
Q  16 ggggtttgaaccacaaaccttacatatattatgtaatgtttctactaactgaattaagctca 77  Q
    |||||||||||| | |||||||||||||||||| | | ||||||| |||||| |||||||||    
T  3650582 ggggtttgaaccccgaaccttacatatattatgcattttttctaccaactgagttaagctca 3650521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 38 - 77
Target Start/End: Original strand, 42541868 - 42541907
Alignment:
Q  38 catatattatgtaatgtttctactaactgaattaagctca 77  Q
    |||||||||| || ||||||||||||||||||||||||||    
T  42541868 catatattatatattgtttctactaactgaattaagctca 42541907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 33373746 - 33373783
Alignment:
Q  11 ttgttggggtttgaaccacaaaccttacatatattatg 48  Q
    ||||||||||||||||| || |||||||||||||||||    
T  33373746 ttgttggggtttgaaccccagaccttacatatattatg 33373783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 1230664 - 1230716
Alignment:
Q  20 tttgaaccacaaaccttacatatattatgtaatgtttctactaactgaattaa 72  Q
    |||||||| |||||||||||||||||||| | |||| |||| |||||| ||||    
T  1230664 tttgaacctcaaaccttacatatattatgcattgttcctaccaactgagttaa 1230716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 24202215 - 24202156
Alignment:
Q  13 gttggggtttgaaccacaaaccttacatatattatgtaatgtttctactaactgaattaag 73  Q
    ||||| ||||||||| | ||||||| |||||||||||| ||||| ||| ||||||||||||    
T  24202215 gttggagtttgaacc-cgaaccttatatatattatgtattgtttataccaactgaattaag 24202156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 14258 - 14205
Alignment:
Q  20 tttgaaccacaaaccttacatatattatgtaatgtttctactaactgaattaag 73  Q
    |||||||| |||||||||||||||||||||| |||| |||  ||||||||||||    
T  14258 tttgaacctcaaaccttacatatattatgtattgttactatcaactgaattaag 14205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 29791834 - 29791777
Alignment:
Q  20 tttgaaccacaaaccttacatatattatgtaatgtttctactaactgaattaagctca 77  Q
    |||||||| |||||||||||||||||||||| ||||||||  |||||| |||| ||||    
T  29791834 tttgaacctcaaaccttacatatattatgtattgtttctatcaactgagttaaactca 29791777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 55395321 - 55395362
Alignment:
Q  14 ttggggtttgaaccacaaaccttacatatattatgtaatgtt 55  Q
    |||||||||||||| |||||||||||||||||||||| ||||    
T  55395321 ttggggtttgaaccccaaaccttacatatattatgtattgtt 55395362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 49025063 - 49025104
Alignment:
Q  7 ttttttgttggggtttgaaccacaaaccttacatatattatg 48  Q
    |||||||||||  ||||||||||||| |||||||||||||||    
T  49025063 ttttttgttggaatttgaaccacaaatcttacatatattatg 49025104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 27412835 - 27412896
Alignment:
Q  16 ggggtttgaaccacaaaccttacatatattatgtaatgtttctactaactgaattaagctca 77  Q
    ||||||||||| ||| ||||||||||||||||| | ||| ||||| |||||| |||||||||    
T  27412835 ggggtttgaacaacagaccttacatatattatgcattgtctctaccaactgagttaagctca 27412896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 29896293 - 29896354
Alignment:
Q  16 ggggtttgaaccacaaaccttacatatattatgtaatgtttctactaactgaattaagctca 77  Q
    |||||||||||| |||||||| ||||||||||| | ||||||||  ||||||||||| ||||    
T  29896293 ggggtttgaaccccaaaccttgcatatattatgcattgtttctatcaactgaattaaactca 29896354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 12126931 - 12126897
Alignment:
Q  16 ggggtttgaaccacaaaccttacatatattatgta 50  Q
    |||||||||||| ||||||||||||||||||||||    
T  12126931 ggggtttgaacctcaaaccttacatatattatgta 12126897  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 5028918 - 5028886
Alignment:
Q  16 ggggtttgaaccacaaaccttacatatattatg 48  Q
    |||||||||||| ||||||||||||||||||||    
T  5028918 ggggtttgaaccccaaaccttacatatattatg 5028886  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 32407564 - 32407596
Alignment:
Q  18 ggtttgaaccacaaaccttacatatattatgta 50  Q
    |||||||||| ||||||||||||||||||||||    
T  32407564 ggtttgaacctcaaaccttacatatattatgta 32407596  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 13584404 - 13584352
Alignment:
Q  13 gttggggtttgaaccacaaaccttacatatattatgtaatgtttctactaact 65  Q
    ||||||||||||||||  |||||||||||||||||||| |||  |||||||||    
T  13584404 gttggggtttgaaccatgaaccttacatatattatgtattgtccctactaact 13584352  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 9311929 - 9311990
Alignment:
Q  16 ggggtttgaaccacaaaccttacatatattatgtaatgtttctactaactgaattaagctca 77  Q
    |||||||||||| |||| ||||||||||||||||| | ||  ||| |||||| |||||||||    
T  9311929 ggggtttgaacctcaaatcttacatatattatgtattattcataccaactgagttaagctca 9311990  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 26675951 - 26676006
Alignment:
Q  22 tgaaccacaaaccttacatatattatgtaatgtttctactaactgaattaagctca 77  Q
    ||||||||||||||||||||||||||||| | || |||  || |||||||||||||    
T  26675951 tgaaccacaaaccttacatatattatgtattattcctaacaattgaattaagctca 26676006  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 26947559 - 26947614
Alignment:
Q  22 tgaaccacaaaccttacatatattatgtaatgtttctactaactgaattaagctca 77  Q
    ||||||||||||||||||||||||||||| | || |||  || |||||||||||||    
T  26947559 tgaaccacaaaccttacatatattatgtattattcctaacaattgaattaagctca 26947614  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 12297665 - 12297596
Alignment:
Q  7 ttttttgttggggtttgaaccacaaaccttacatatattatgtaatgtttctactaactgaattaagctca 77  Q
    |||||||| ||||||| |||||||| | |||||||||||||||| ||| ||||| |||||| | |||||||    
T  12297665 ttttttgtcggggtttaaaccacaatc-ttacatatattatgtattgtctctaccaactgagtcaagctca 12297596  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 29695077 - 29695045
Alignment:
Q  16 ggggtttgaaccacaaaccttacatatattatg 48  Q
    |||||||||||||| ||||||||||||||||||    
T  29695077 ggggtttgaaccacgaaccttacatatattatg 29695045  T

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Target: scaffold1120 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1120
Description:

Target: scaffold1120; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 1976 - 1915
Alignment:
Q  15 tggggtttgaaccacaaaccttacatatattatgtaatgtttctactaactgaattaagctc 76  Q
    ||||||||||||||| |||||| ||||||||||| | |||| |||| ||| || ||||||||    
T  1976 tggggtttgaaccacgaaccttgcatatattatgcattgttcctaccaacggagttaagctc 1915  T

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Target: scaffold0027 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 42786 - 42730
Alignment:
Q  17 gggtttgaaccacaaaccttacatatattatgtaatgtttctactaactgaattaag 73  Q
    |||||||||| ||| |||||||||||||||| || ||||||| | |||||| |||||    
T  42786 gggtttgaactacagaccttacatatattatatattgtttcttccaactgagttaag 42730  T

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