View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16991_low_39 (Length: 316)
Name: NF16991_low_39
Description: NF16991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16991_low_39 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 14 - 289
Target Start/End: Original strand, 7370387 - 7370662
Alignment:
| Q |
14 |
aatatcaagatcacaaagctatcaataattttgactcttcattcatttgaaattgaagctaaaaagaagaaaccatataagatgttgataaaataaacta |
113 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
7370387 |
aatatcaagatctcaaagctatcaataattttgactcttcattcatttgaaattgaagctaaaaagaagaaatcatataagatgttgataaaataaacta |
7370486 |
T |
|
| Q |
114 |
gaagttgcaacatttcaaaagagaagnnnnnnnnnnnnccattaatgaaaggatgaagatgttgctagcttgagataactccgaagaaaactttggagac |
213 |
Q |
| |
|
|||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7370487 |
gaagttgcaacatttcaaaagagaagaaaaacaaaaaacgatcaatgaaaggatgaagatgttgctagcttgagataactccgaagaaaactttggagac |
7370586 |
T |
|
| Q |
214 |
acttcactctatcctccagaacttgacactttagtttaccctccacaatttgcatctcatctccggtagtttcaaa |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7370587 |
acttcactctatcctccagaacttgacactttagtttaccctccacaatttgcatctcatctccggtagtttcaaa |
7370662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 47 - 136
Target Start/End: Original strand, 7322775 - 7322863
Alignment:
| Q |
47 |
actcttcattcatttgaaattgaagctaaaaagaagaaaccatataagatgttgataaaataaactagaagttgcaacatttcaaaagag |
136 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||| ||||||| |||| | | || || ||||||||||||| |||||||||||||||| |
|
|
| T |
7322775 |
actcttcattcattttaaattgaagc-aaaaagaagcaaccatacaagacgataatcaagtaaactagaagttccaacatttcaaaagag |
7322863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 133
Target Start/End: Original strand, 7291202 - 7291285
Alignment:
| Q |
51 |
ttcattcatttgaaattgaagctaaaaagaagaaaccatataagatgttg--ataaaataaactagaagttgcaacatttcaaaa |
133 |
Q |
| |
|
||||||||||| ||||||||| |||||||||| | ||||||||||| | || |||||||| ||||||||||||||||||||| |
|
|
| T |
7291202 |
ttcattcattttaaattgaag-taaaaagaagcgatcatataagatgatataatcaaataaaccagaagttgcaacatttcaaaa |
7291285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University