View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16991_low_40 (Length: 313)
Name: NF16991_low_40
Description: NF16991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16991_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 270
Target Start/End: Original strand, 35837198 - 35837452
Alignment:
| Q |
19 |
agttcatatggcaagctctctcacccatcaccaaaagtaagtataatcactaaatattattgtatttttcttctttaatttggttccagtaattaaacaa |
118 |
Q |
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| T |
35837198 |
agttcatatggcaagctctctcacccatcaccaaaagtaagtataatcactaaatattattgtttttttcttcttttatttggttccagtaattaaacaa |
35837297 |
T |
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| Q |
119 |
gcccttcaa-tttttagcattaaaactggtttctttg-nnnnnnnagtttaactgacaatgtggtactgttggnnnnnnnctctccacatttgg-ttagt |
215 |
Q |
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||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
35837298 |
gcccttcaattttttagcattaaaactggtttctttgttttttttagtttaactgacaatgtggtactgttggtttttttctctccacatttggtttagt |
35837397 |
T |
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| Q |
216 |
tggttgttttgatttctgaataagtgattatcgtttaactgacttaaaaaagttg |
270 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
35837398 |
tggttgttttgatttctgaataagtgattatcttttaactgacttaaaaaagttg |
35837452 |
T |
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