View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16991_low_44 (Length: 291)

Name: NF16991_low_44
Description: NF16991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16991_low_44
NF16991_low_44
[»] chr4 (3 HSPs)
chr4 (46-125)||(51406923-51407002)
chr4 (46-125)||(50590357-50590436)
chr4 (248-283)||(51407125-51407160)
[»] chr5 (2 HSPs)
chr5 (37-124)||(33758549-33758636)
chr5 (37-123)||(9437168-9437254)
[»] chr3 (1 HSPs)
chr3 (37-91)||(51056077-51056131)
[»] chr7 (1 HSPs)
chr7 (46-93)||(15118085-15118132)


Alignment Details
Target: chr4 (Bit Score: 72; Significance: 9e-33; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 46 - 125
Target Start/End: Original strand, 51406923 - 51407002
Alignment:
Q  46 ggtgcgacggtcggctttagccatccgcaccatcctttccagatctcctagaggtttccgcgtcggtagactgtggttgc 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  51406923 ggtgcgacggtcggctttagccatccgcaccatcctttccagatctcctggaggtttccgcgccggtagactgtggttgc 51407002  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 46 - 125
Target Start/End: Complemental strand, 50590436 - 50590357
Alignment:
Q  46 ggtgcgacggtcggctttagccatccgcaccatcctttccagatctcctagaggtttccgcgtcggtagactgtggttgc 125  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||  ||||||  ||||||||| ||||||||||||    
T  50590436 ggtgcgacggtcggctttagccatccgcaccacactttccagatctcccggaggttgtcgcgtcggtggactgtggttgc 50590357  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 248 - 283
Target Start/End: Original strand, 51407125 - 51407160
Alignment:
Q  248 aagtctcgattttggtggtaaaaggaggtgatgatg 283  Q
    ||||||||||||||||||||| ||||||||||||||    
T  51407125 aagtctcgattttggtggtaagaggaggtgatgatg 51407160  T

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Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 37 - 124
Target Start/End: Complemental strand, 33758636 - 33758549
Alignment:
Q  37 gttggtgacggtgcgacggtcggctttagccatccgcaccatcctttccagatctcctagaggtttccgcgtcggtagactgtggttg 124  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||    
T  33758636 gttggtggtggtgcgacggtcggctttagccatccgcaccatcctttccagatctcccggaggtttccgcgccggtagactgtggttg 33758549  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 123
Target Start/End: Complemental strand, 9437254 - 9437168
Alignment:
Q  37 gttggtgacggtgcgacggtcggctttagccatccgcaccatcctttccagatctcctagaggtttccgcgtcggtagactgtggtt 123  Q
    |||||||  |||| ||||||||||||||||||||||||||| |||||| ||||||||   ||||| | || ||||| ||||||||||    
T  9437254 gttggtggtggtgtgacggtcggctttagccatccgcaccaccctttctagatctcccgaaggttgctgcatcggtggactgtggtt 9437168  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 91
Target Start/End: Original strand, 51056077 - 51056131
Alignment:
Q  37 gttggtgacggtgcgacggtcggctttagccatccgcaccatcctttccagatct 91  Q
    |||||||  |||||||||||||||||||||||||| ||||| |||||||||||||    
T  51056077 gttggtggtggtgcgacggtcggctttagccatccacaccaccctttccagatct 51056131  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 93
Target Start/End: Original strand, 15118085 - 15118132
Alignment:
Q  46 ggtgcgacggtcggctttagccatccgcaccatcctttccagatctcc 93  Q
    |||| ||||||||| ||||||||||||||||| |||||||||||||||    
T  15118085 ggtgtgacggtcgggtttagccatccgcaccaccctttccagatctcc 15118132  T

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