View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16991_low_47 (Length: 271)
Name: NF16991_low_47
Description: NF16991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16991_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 3670342 - 3670481
Alignment:
| Q |
1 |
gcaaattttacaaattcacttcatgattcaaagctaccaacttctgaaaatcaagaacattttcagctggaca---tgatgaattctaaaagctttttgg |
97 |
Q |
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| T |
3670342 |
gcaaattttacaaattcacttcatgattcaaagctaccaacttctgaaaatcaagaacattttcagctggacatgttgatgaattctagaagctttttgg |
3670441 |
T |
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| Q |
98 |
acagatcaattggttcaaataccaattctgaacaatacgc |
137 |
Q |
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| T |
3670442 |
acagatcaattggttcaaataccaattctgaacaatacgc |
3670481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 141 - 252
Target Start/End: Original strand, 3670517 - 3670628
Alignment:
| Q |
141 |
tgaagaacatttaatttggaattagaacgttactcgttagcttggatcctttgtagtcctccggtcggtgcataaaattttgaaccattggatttgaggt |
240 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| || |||||||||||||| ||||||||||||||||||| |
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| T |
3670517 |
tgaagaacatttaatttggaattagaacgttactcgtcagcttggatcctctgtagtcctccagttggtgcataaaatttcgaaccattggatttgaggt |
3670616 |
T |
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| Q |
241 |
gcaactcaatcc |
252 |
Q |
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| T |
3670617 |
gcaactcaatcc |
3670628 |
T |
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