View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16991_low_5 (Length: 694)
Name: NF16991_low_5
Description: NF16991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16991_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 561; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 14 - 656
Target Start/End: Complemental strand, 8004571 - 8003928
Alignment:
| Q |
14 |
cagagagaacataattttttaattttaacgtgtgtgataccctgaatttttaaaaaggaacgaattaatgaaaccattgaaaaacaatgacacttacaga |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8004571 |
cagagagaacataattttttaattttaacgtgtgtgataccctgaatttttaaaaaggaacgaattaatgaaaccattgaaaaacaatgacacttacaga |
8004472 |
T |
|
| Q |
114 |
taagaaaagattcatcccagtaagcaatgattgtggacagtttgcagtacaattaattgaaggttgaccctcataaacgataactttgtcagcaagataa |
213 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8004471 |
taagaaaaggttcatcccggtaagcaatgattgtggacagtttgcagtacaattaattgaaggttgaccctcataaacgataactttgtcagcaagataa |
8004372 |
T |
|
| Q |
214 |
gttgccatgatgaaatcatgctcaacgataaaggctgttttctttgcatgaagaataaacctcttaatgacttttgcagcaacaatacgctgttccgaat |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8004371 |
gttgccatgatgaaatcatgctcaacgataaaggctgttttctttgcatgaagaataaacctcttaatgacttttgcagcaacaatacgctgttctgaat |
8004272 |
T |
|
| Q |
314 |
caagatatgcacttggctcatctatcagatagatgtctgcaggctgttgttgtagaacaatagcaactgattagaaaactataaatgctatttagtttaa |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
8004271 |
caagatatgcacttggctcatctatcagatagatgtctgcaggctgttgttgtagaacaatagcaactgattagaaaactataaatactatttagtttaa |
8004172 |
T |
|
| Q |
414 |
aatgaatagatgtctaaagtagcaaaatcaaacacgcaacaaagctgagtgatatagttctaaaaatcttgctacaacatcatcacaaatagaacagtaa |
513 |
Q |
| |
|
||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
8004171 |
aatgaatagatgtctaaagcaggaaaaacaaacacgcaacaaagctgagtgatatagttccaaaagtcttgccacaacatcatcacaaatagaacagtaa |
8004072 |
T |
|
| Q |
514 |
tggatcgtgaattcaattaatattttgtttgaagtaaaatgtatacattaaagagacaaacatagatcaatcacaacaaattcaagtttc-nnnnnnnnn |
612 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8004071 |
tgaatcgtgaattcaattaatattttgtttgaagtaaaatgtatacattaaagagacagacatagatcaatcacaacaaattcaagtttcaaaaaaaaaa |
8003972 |
T |
|
| Q |
613 |
tcaacacaggtttagcttttaacttgtttccgttacataatttg |
656 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8003971 |
tcaacacaggtttagcttttaacttgtttccgttacataatttg |
8003928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 21 - 656
Target Start/End: Original strand, 7900541 - 7901179
Alignment:
| Q |
21 |
aacataattttttaattttaacgtgtgtgataccctgaatttttaaaaaggaacgaattaatgaaaccattgaaaaacaatgacacttacagataagaaa |
120 |
Q |
| |
|
|||||||||||| ||||||||| || ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7900541 |
aacataatttttaaattttaacatgcatgataccctaaatttttaaaaagggacgaattaatgaaaccattgaaaaacaatgacacttacagataagaaa |
7900640 |
T |
|
| Q |
121 |
agattcatcccagtaagcaatgattgtggacagtttgcagtacaattaa-ttgaaggttgaccctcataaacgataactttgtcagcaagataagttgcc |
219 |
Q |
| |
|
|| |||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
7900641 |
aggttcatcccagtaagcagtgattgtggacagtttgcagtaaaattaaattgaaggttgaccctcaagaacgataactttgtcagcaagataatttgcc |
7900740 |
T |
|
| Q |
220 |
atgatgaaatcatgctcaacgataaaggctgttttctttgcatgaagaataaacctcttaatgacttttgcagcaacaatacgctgttccgaatcaagat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||| |
|
|
| T |
7900741 |
atgatgaaatcatgctcaacgataaaggctgttttctttgcatgaagaataaacctcttaatgacttttgcaactacaatacgctgttcggaatcaagat |
7900840 |
T |
|
| Q |
320 |
atgcacttggctcatctatcagatagatgtctgcaggctgttgttgtagaacaatagcaactgattagaaaactataaatgctatttagtttaaaatgaa |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
7900841 |
atgcacttggctcatctatcagatagatgtctgcaggctgttgttgtagaacaatagcaactgattaaaaaactataaatactatttagtttaaaatgaa |
7900940 |
T |
|
| Q |
420 |
tagatgtctaaagtagcaaaatcaaacacgcaacaaagctgagtgatatagttctaaaaatcttgctacaacatcatcacaaatagaacagtaatggatc |
519 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
7900941 |
tagatgtctaaagtagcaaaatcaaacacacaacaaagctgagtgatatagttctaaaaatcttgctacaacatcatcacaaatagaacagtaatgaatc |
7901040 |
T |
|
| Q |
520 |
gtgaattcaattaatattttgtttgaagtaaaatgtatacattaaagagacaaacatagatcaatcacaacaaattcaagttt--cnnnnnnnnntcaac |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||| ||||||| ||||| |
|
|
| T |
7901041 |
gtgaattcaattaatattttgtttgaagtaaaatgtatacattaaagagatataaatagatcaatcacaacaaatccaagtttaaaaaaaaaaaatcaac |
7901140 |
T |
|
| Q |
618 |
acaggtttagcttttaacttgtttccgttacataatttg |
656 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
7901141 |
acaggttgagcttttaacttatttccgttacataatttg |
7901179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 23 - 390
Target Start/End: Complemental strand, 51518882 - 51518515
Alignment:
| Q |
23 |
cataattttttaattttaacgtgtgtgataccctgaatttttaaaaaggaacgaattaatgaaaccattgaaaaacaatgacacttacagataagaaaag |
122 |
Q |
| |
|
|||| ||||| ||||||||| | |||||||||| ||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
51518882 |
catactttttaaattttaactttcgtgataccctaaatttttaaaacggaatgaattaatgaaaccattgaaaaacaacgacacttacagataagaaaag |
51518783 |
T |
|
| Q |
123 |
attcatcccagtaagcaatgattgtggacagtttgcagtacaattaattgaaggttgaccctcataaacgataactttgtcagcaagataagttgccatg |
222 |
Q |
| |
|
|||||||| || ||||||||||||||||| ||||||||||| | |||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
51518782 |
gttcatcccggtcagcaatgattgtggacaatttgcagtacagtcaattgaaggttgaccctcataaacaataactctgtcagcaagataagttgccatg |
51518683 |
T |
|
| Q |
223 |
atgaaatcatgctcaacgataaaggctgttttctttgcatgaagaataaacctcttaatgacttttgcagcaacaatacgctgttccgaatcaagatatg |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
51518682 |
atgaaatcatgctcaacgataaaggctgttttctttgcatgaagaataaacctcttgatgacttttgcagcaacaatacgctgttcggaatcaagatatg |
51518583 |
T |
|
| Q |
323 |
cacttggctcatctatcagatagatgtctgcaggctgttgttgtagaacaatagcaactgattagaaa |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
51518582 |
cacttggctcatctatcagatagatgtctgcaggctgttgttgtaggacaatagcaactgattagaaa |
51518515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 522 - 656
Target Start/End: Original strand, 7904498 - 7904632
Alignment:
| Q |
522 |
gaattcaattaatattttgtttgaagtaaaatgtatacattaaagagacaaacatagatcaatcacaacaaattcaagtttcnnnnnnnnntcaacacag |
621 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7904498 |
gaattcaattaatattttgtttgaagtaaaatgtatacattaaagagacagacatagatcaatcacaacaaattcaagtttcaaaaaaaaatcaacacag |
7904597 |
T |
|
| Q |
622 |
gtttagcttttaacttgtttccgttacataatttg |
656 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
7904598 |
gtttagcttttaacttgtttccgttacataatttg |
7904632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 522 - 656
Target Start/End: Original strand, 7902873 - 7903010
Alignment:
| Q |
522 |
gaattcaattaatattttgtttgaagtaaaatgta-tacattaaagagacaaacatagatcaatcacaacaaattcaagttt--cnnnnnnnnntcaaca |
618 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| | | |||||||||||||||||||| ||||||| |||||| |
|
|
| T |
7902873 |
gaattcaattaatattttgtttgaagtaaaatgtattacattaaagagatataaatagatcaatcacaacaaatccaagtttaaaaaaaaaaaatcaaca |
7902972 |
T |
|
| Q |
619 |
caggtttagcttttaacttgtttccgttacataatttg |
656 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
7902973 |
caggttgagcttttaacttatttccgttacataatttg |
7903010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 503 - 603
Target Start/End: Complemental strand, 51518446 - 51518346
Alignment:
| Q |
503 |
tagaacagtaatggatcgtgaattcaattaatattttgtttgaagtaaaatgtatacattaaagagacaaacatagatcaatcacaacaaattcaagttt |
602 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| || ||| | | ||| | |||||||||||||| ||||||| |
|
|
| T |
51518446 |
tagaacagtaatggaatgtgaattcaattaatattttgtttgaaataaaatgtatacatttaacagatagaaatataacaatcacaacaaatccaagttt |
51518347 |
T |
|
| Q |
603 |
c |
603 |
Q |
| |
|
| |
|
|
| T |
51518346 |
c |
51518346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 83 - 506
Target Start/End: Original strand, 1300350 - 1300778
Alignment:
| Q |
83 |
gaaaccattgaaaaacaatgacacttacagataagaaaagattcatcccagtaagcaatgattgtggacagtttgcagtacaattaattgaaggttgacc |
182 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| |||||||||| | ||||||||||| | ||||||||||||||| |
|
|
| T |
1300350 |
gaaaccattgaaaaacaatgacacttactgataagaaaaggttcatcccagtcagcagtgattgtggagaatttgcagtacagtcaattgaaggttgacc |
1300449 |
T |
|
| Q |
183 |
ctcataaacgataactttgtcagcaagataagttgccatgatgaaatcatgctcaacgataaaggctgttttctttgcatgaagaataaacctcttaatg |
282 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| || |
|
|
| T |
1300450 |
ctcataaacaataactctgtcagcaagataagttgccatgatgaaatcatgctcaaccacaaaggctgttttctttgcatgaagaataaacctcttgata |
1300549 |
T |
|
| Q |
283 |
acttttgcagcaacaatacgctgttccgaatcaagatatgcacttggctcatctatcagatagatgtctgcaggctgttgttgtagaacaatagcaactg |
382 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| || ||||||| || |
|
|
| T |
1300550 |
acttttgcagcaataatacgctgttcggaatcaagatatgcacttggctcatctatcagataaatgtctgcaggctgttgtggtaggacgatagcaattg |
1300649 |
T |
|
| Q |
383 |
attagaaaactataaatgctatttagtttaaaatgaatag------atgtctaaagtagcaaaatcaaacacgcaacaaagctgagtgatatagttctaa |
476 |
Q |
| |
|
||||||||||| ||||| |||||| |||| |||| ||||| | ||| ||||||||||| |||| || ||||||||| || ||||||||||||| |
|
|
| T |
1300650 |
attagaaaactgtaaatactatttcgtttgaaataaataggagtgcacatctcaagtagcaaaa-caaagacacaacaaagccaagagatatagttctaa |
1300748 |
T |
|
| Q |
477 |
aaatcttgctacaacatcatcacaaataga |
506 |
Q |
| |
|
||||||||| | || ||| |||||||||| |
|
|
| T |
1300749 |
aaatcttgccatgacgtcagcacaaataga |
1300778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 503 - 560
Target Start/End: Original strand, 1300798 - 1300855
Alignment:
| Q |
503 |
tagaacagtaatggatcgtgaattcaattaatattttgtttgaagtaaaatgtataca |
560 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
1300798 |
tagaaccgtaatggatcaggaattcaattaatatttattttgaaataaaatgtataca |
1300855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University