View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16991_low_56 (Length: 249)

Name: NF16991_low_56
Description: NF16991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16991_low_56
NF16991_low_56
[»] chr8 (6 HSPs)
chr8 (1-234)||(454260-454493)
chr8 (87-224)||(10685610-10685748)
chr8 (87-224)||(35743992-35744130)
chr8 (87-224)||(18867016-18867154)
chr8 (43-224)||(26299909-26300091)
chr8 (126-224)||(18856621-18856719)
[»] chr5 (9 HSPs)
chr5 (43-224)||(28836851-28837033)
chr5 (1-224)||(37557970-37558194)
chr5 (1-224)||(31398338-31398562)
chr5 (132-224)||(33789964-33790056)
chr5 (1-224)||(27448339-27448563)
chr5 (10-224)||(24556930-24557145)
chr5 (10-224)||(24597962-24598177)
chr5 (132-172)||(43595770-43595810)
chr5 (132-172)||(43628564-43628604)
[»] chr7 (7 HSPs)
chr7 (87-224)||(16883530-16883668)
chr7 (87-224)||(24262669-24262807)
chr7 (10-226)||(49090214-49090431)
chr7 (10-224)||(18412184-18412399)
chr7 (87-224)||(21644640-21644778)
chr7 (43-224)||(21987479-21987661)
chr7 (10-172)||(9186543-9186706)
[»] chr6 (5 HSPs)
chr6 (43-224)||(24432667-24432849)
chr6 (87-224)||(33332422-33332560)
chr6 (87-224)||(14738918-14739056)
chr6 (87-224)||(29485190-29485328)
chr6 (106-172)||(24077553-24077619)
[»] chr3 (7 HSPs)
chr3 (87-224)||(8515697-8515835)
chr3 (43-224)||(16262921-16263103)
chr3 (87-224)||(32478943-32479081)
chr3 (10-224)||(1309397-1309612)
chr3 (87-224)||(2673566-2673704)
chr3 (87-172)||(28490571-28490657)
chr3 (126-172)||(9603245-9603291)
[»] chr2 (2 HSPs)
chr2 (1-224)||(19347795-19348019)
chr2 (126-172)||(25394529-25394575)
[»] scaffold0197 (1 HSPs)
scaffold0197 (87-224)||(15655-15793)
[»] scaffold0006 (2 HSPs)
scaffold0006 (43-223)||(1067-1247)
scaffold0006 (43-172)||(9223-9352)
[»] chr1 (3 HSPs)
chr1 (10-225)||(9025143-9025359)
chr1 (87-224)||(41396842-41396980)
chr1 (10-234)||(47100154-47100379)
[»] chr4 (3 HSPs)
chr4 (1-224)||(9225750-9225974)
chr4 (87-172)||(16625391-16625477)
chr4 (126-181)||(5146547-5146602)


Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 454493 - 454260
Alignment:
Q  1 gagatgcttcactagctaacgatacatgatcaattacagtaaaaccatctaaaatgtataaatcaaacatcttaaaacatttaagagtaattaatgcacc 100  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  454493 gagatgctgcactagctaacgatacatgatcaattacaataaaaccatctaaaatgtataaatcaaacatcttaaaacatttaagagtaattaatgcacc 454394  T
Q  101 attcgaaatttacacatctcattcacaattttagtgcaataacctagattatcaaacatgctaatggaaattgcattttgcataggttcaggatcatatc 200  Q
    ||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||     
T  454393 attcgaaatttacacatctcatatacaattttagtgcaataacttagattatcaaacatgttaatgggaattgcattttgcataggttcaggatcatatg 454294  T
Q  201 acacatgccttaaaaggaattcacagtgatcaaa 234  Q
     |||||||||||||||||| ||||||||||||||    
T  454293 tcacatgccttaaaaggaactcacagtgatcaaa 454260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 87 - 224
Target Start/End: Complemental strand, 10685748 - 10685610
Alignment:
Q  87 gtaattaatgcaccattcgaaattt-acacatctcattcacaattttagtgcaataacctagattatcaaacatgctaatggaaattgcattttgcatag 185  Q
    ||||| |||||||||| |||||||| ||| | | ||| | | ||| ||||||||||||||||||||||||||||||| |||||||||  |||| || ||     
T  10685748 gtaatcaatgcaccatgcgaaattttacaaaccccatgctctattctagtgcaataacctagattatcaaacatgcttatggaaattaaatttcgcttaa 10685649  T
Q  186 gttcaggatcatatcacacatgccttaaaaggaattcac 224  Q
    |||| ||| |||| | ||||| |||||||||||||||||    
T  10685648 gttcgggaacatacctcacatcccttaaaaggaattcac 10685610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 87 - 224
Target Start/End: Original strand, 35743992 - 35744130
Alignment:
Q  87 gtaattaatgcaccattcgaaattt-acacatctcattcacaattttagtgcaataacctagattatcaaacatgctaatggaaattgcattttgcatag 185  Q
    ||||| |||||||||| |||||||| ||| | | ||| | | ||| ||||||||||||||||||||||||||||||| |||||||||  |||| || ||     
T  35743992 gtaatcaatgcaccatgcgaaattttacaaaccccatgctctattctagtgcaataacctagattatcaaacatgcttatggaaattaaatttcgcttaa 35744091  T
Q  186 gttcaggatcatatcacacatgccttaaaaggaattcac 224  Q
    |||| ||| || | | ||||| |||||||||||||||||    
T  35744092 gttcgggaacaaacctcacatcccttaaaaggaattcac 35744130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 224
Target Start/End: Complemental strand, 18867154 - 18867016
Alignment:
Q  87 gtaattaatgcaccattcgaaattt-acacatctcattcacaattttagtgcaataacctagattatcaaacatgctaatggaaattgcattttgcatag 185  Q
    ||||| |||||||||| |||||||| ||| | | ||| | ||||| ||||||||||||||||||||||||||||||| | |||||||  |||  || ||     
T  18867154 gtaatcaatgcaccatgcgaaattttacaaaccccatgctcaattctagtgcaataacctagattatcaaacatgcttagggaaattaaattacgcttaa 18867055  T
Q  186 gttcaggatcatatcacacatgccttaaaaggaattcac 224  Q
    |||| ||| || | | ||||| |||||||||||||||||    
T  18867054 gttcgggaacaaacctcacatcccttaaaaggaattcac 18867016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 43 - 224
Target Start/End: Original strand, 26299909 - 26300091
Alignment:
Q  43 aaccatctaaaatgtataaatcaaacatcttaaaacatttaagagtaattaatgcaccattcgaaattt-acacatctcattcacaattttagtgcaata 141  Q
    |||||||||||||||||||| ||  ||| ||| | |  ||||  ||||| |||||||||| |||||||| ||| | | |||   ||||| ||||||||||    
T  26299909 aaccatctaaaatgtataaaccattcattttagaccccttaaccgtaatcaatgcaccatacgaaattttacaaaccccatgttcaattctagtgcaata 26300008  T
Q  142 acctagattatcaaacatgctaatggaaattgcattttgcataggttcaggatcatatcacacatgccttaaaaggaattcac 224  Q
    ||||||| ||||||||||| | |||||||||  |||  || || |||| ||| || | | ||||| |||||||||||||||||    
T  26300009 acctagactatcaaacatggttatggaaattaaattacgcttaagttcgggaacaaacctcacatcccttaaaaggaattcac 26300091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 224
Target Start/End: Complemental strand, 18856719 - 18856621
Alignment:
Q  126 caattttagtgcaataacctagattatcaaacatgctaatggaaattgcattttgcataggttcaggatcatatcacacatgccttaaaaggaattcac 224  Q
    ||||| |||||||||||||||||||||||||||| |  | |||||||  |||  || || |||| ||| || | | ||||| |||||||||||||||||    
T  18856719 caattctagtgcaataacctagattatcaaacatacatagggaaattaaattacgcttaagttcgggaacaaacctcacatcccttaaaaggaattcac 18856621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 43 - 224
Target Start/End: Original strand, 28836851 - 28837033
Alignment:
Q  43 aaccatctaaaatgtataaatcaaacatcttaaaacatttaagagtaattaatgcaccattcgaaattt-acacatctcattcacaattttagtgcaata 141  Q
    |||||||||||||||||||| ||  ||| ||| | | |||||  ||||| |||||||||| |||||||| ||| | ||||| | ||||| ||||||||||    
T  28836851 aaccatctaaaatgtataaaccattcattttagaccctttaaccgtaatcaatgcaccatgcgaaattttacaaacctcatgctcaattctagtgcaata 28836950  T
Q  142 acctagattatcaaacatgctaatggaaattgcattttgcataggttcaggatcatatcacacatgccttaaaaggaattcac 224  Q
    ||||||| ||||||||||||| | |||||||  |||| || || |||| ||| || ||| ||||| | |||||||||||||||    
T  28836951 acctagactatcaaacatgcttagggaaattaaatttcgcttaagttcgggaacaaatctcacatcctttaaaaggaattcac 28837033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 37558194 - 37557970
Alignment:
Q  1 gagatgcttcactagctaacgatacatgatcaattacagtaaaaccatctaaaatgtataaatcaaacatcttaaaacatttaagagtaattaatgcacc 100  Q
    |||||||  ||||||||| |||| ||| | |||||||  |  |||||||||||||||||||| ||  |||  || | |  |||| |||||| ||||||||    
T  37558194 gagatgcaacactagctaccgatgcattaccaattactatggaaccatctaaaatgtataaaccattcattctagaccccttaatagtaatcaatgcacc 37558095  T
Q  101 attcgaaattt-acacatctcattcacaattttagtgcaataacctagattatcaaacatgctaatggaaattgcattttgcataggttcaggatcatat 199  Q
    || |||||||| ||| | | ||| | | ||| ||||||||||||||||||||||||||||||| |||||||||  |||| || || |||| ||| || |     
T  37558094 atgcgaaattttacaaaccccatgctctattctagtgcaataacctagattatcaaacatgcttatggaaattaaatttcgcttaagttcgggaacaaac 37557995  T
Q  200 cacacatgccttaaaaggaattcac 224  Q
    | ||||| |||||||||||||||||    
T  37557994 ctcacatcccttaaaaggaattcac 37557970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 31398562 - 31398338
Alignment:
Q  1 gagatgcttcactagctaacgatacatgatcaattacagtaaaaccatctaaaatgtataaatcaaacatcttaaaacatttaagagtaattaatgcacc 100  Q
    |||||||  ||||||||| |||| ||| | |||||||  || |||||||||||||||||||| ||  |||  || | |  || |  ||||| ||||||||    
T  31398562 gagatgcaacactagctaccgatgcattaccaattactatagaaccatctaaaatgtataaaccattcattctagacccctttaccgtaatcaatgcacc 31398463  T
Q  101 attcgaaattt-acacatctcattcacaattttagtgcaataacctagattatcaaacatgctaatggaaattgcattttgcataggttcaggatcatat 199  Q
    || |||||||| ||| | | ||| | | ||| || |||||||||||||||||||||||||||| |||||||||  |||| || || |||| ||| ||||     
T  31398462 atgcgaaattttacaaaccccatgctctattctactgcaataacctagattatcaaacatgcttatggaaattaaatttcgcttaagttcgggaacatac 31398363  T
Q  200 cacacatgccttaaaaggaattcac 224  Q
    | ||||| |||||||||||||||||    
T  31398362 ctcacatcccttaaaaggaattcac 31398338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 132 - 224
Target Start/End: Original strand, 33789964 - 33790056
Alignment:
Q  132 tagtgcaataacctagattatcaaacatgctaatggaaattgcattttgcataggttcaggatcatatcacacatgccttaaaaggaattcac 224  Q
    ||||||||||||||||||||||||||||||| |||||||||  |||| || || |||| ||| || | | ||||| |||||||||||||||||    
T  33789964 tagtgcaataacctagattatcaaacatgcttatggaaattaaatttcgcttaagttcgggaacaaacctcacatcccttaaaaggaattcac 33790056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 27448339 - 27448563
Alignment:
Q  1 gagatgcttcactagctaacgatacatgatcaattacagtaaaaccatctaaaatgtataaatcaaacatcttaaaacatttaagagtaattaatgcacc 100  Q
    |||||||  ||||||||| |||| ||| | |||||||  |  |||||||||||||||||||| ||  |||  || | |  ||||  ||||| ||||||||    
T  27448339 gagatgcaacactagctaccgatgcattaccaattactatggaaccatctaaaatgtataaaccattcattctataccccttaaccgtaatcaatgcacc 27448438  T
Q  101 attcgaaattt-acacatctcattcacaattttagtgcaataacctagattatcaaacatgctaatggaaattgcattttgcataggttcaggatcatat 199  Q
    || |||||||| ||| | | ||| | | ||| ||||||||||||||||||||||||||||||| | |||||||  |||  || || |||| ||| || |     
T  27448439 atgcgaaattttacaaaccccatgctctattctagtgcaataacctagattatcaaacatgcttagggaaattaaattacgcttaagttcgggaacaaac 27448538  T
Q  200 cacacatgccttaaaaggaattcac 224  Q
    | ||||| |||||||||||||||||    
T  27448539 ctcacatcccttaaaaggaattcac 27448563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 224
Target Start/End: Complemental strand, 24557145 - 24556930
Alignment:
Q  10 cactagctaacgatacatgatcaattacagtaaaaccatctaaaatgtataaatcaaacatcttaaaacatttaagagtaattaatgcaccattcgaaat 109  Q
    ||||||||| |||| ||| | |||||||  |  |||||||| ||||||||||| ||  ||| ||| | | |||||  ||||| |||||||||| ||||||    
T  24557145 cactagctaccgatgcattaccaattactatggaaccatctgaaatgtataaaccattcattttagaccctttaaccgtaatcaatgcaccatgcgaaat 24557046  T
Q  110 tt-acacatctcattcacaattttagtgcaataacctagattatcaaacatgctaatggaaattgcattttgcataggttcaggatcatatcacacatgc 208  Q
    || ||| | | ||| | ||||| |||||||||| |||| | ||||||||||||||| |||||||  |||| || || |||| ||| || | | ||||| |    
T  24557045 tttacaaaccccatgctcaattctagtgcaatatcctaaactatcaaacatgctaagggaaattaaatttcgcttaagttcgggaacaaacctcacatcc 24556946  T
Q  209 cttaaaaggaattcac 224  Q
     |||||||||||||||    
T  24556945 tttaaaaggaattcac 24556930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 224
Target Start/End: Complemental strand, 24598177 - 24597962
Alignment:
Q  10 cactagctaacgatacatgatcaattacagtaaaaccatctaaaatgtataaatcaaacatcttaaaacatttaagagtaattaatgcaccattcgaaat 109  Q
    ||||||||| |||| ||| | |||||||  |  |||||||| ||||||||||| ||  ||| ||| | | |||||  ||||| |||||||||| ||||||    
T  24598177 cactagctaccgatgcattaccaattactatggaaccatctgaaatgtataaaccattcattttagaccctttaaccgtaatcaatgcaccatgcgaaat 24598078  T
Q  110 tt-acacatctcattcacaattttagtgcaataacctagattatcaaacatgctaatggaaattgcattttgcataggttcaggatcatatcacacatgc 208  Q
    || ||| | | ||| | ||||| |||||||||| |||| | ||||||||||||||| |||||||  |||| || || |||| ||| || | | ||||| |    
T  24598077 tttacaaaccccatgctcaattctagtgcaatatcctaaactatcaaacatgctaagggaaattaaatttcgcttaagttcgggaacaaacctcacatcc 24597978  T
Q  209 cttaaaaggaattcac 224  Q
     |||||||||||||||    
T  24597977 tttaaaaggaattcac 24597962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 43595770 - 43595810
Alignment:
Q  132 tagtgcaataacctagattatcaaacatgctaatggaaatt 172  Q
    ||||||||||||||||||||||||||||||| | |||||||    
T  43595770 tagtgcaataacctagattatcaaacatgcttagggaaatt 43595810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 43628564 - 43628604
Alignment:
Q  132 tagtgcaataacctagattatcaaacatgctaatggaaatt 172  Q
    ||||||||||||||||||||||||||||||| | |||||||    
T  43628564 tagtgcaataacctagattatcaaacatgcttagggaaatt 43628604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 87 - 224
Target Start/End: Original strand, 16883530 - 16883668
Alignment:
Q  87 gtaattaatgcaccattcgaaattt-acacatctcattcacaattttagtgcaataacctagattatcaaacatgctaatggaaattgcattttgcatag 185  Q
    ||||| |||||||||| |||||||| ||| | | ||| | | ||| ||||||||||||||||||||||||||||||| |||||||||  |||| || ||     
T  16883530 gtaatcaatgcaccatgcgaaattttacaaaccccatgctctattctagtgcaataacctagattatcaaacatgcttatggaaattaaatttcgcttaa 16883629  T
Q  186 gttcaggatcatatcacacatgccttaaaaggaattcac 224  Q
    |||| ||| |||| | ||||| |||||||||||||||||    
T  16883630 gttcgggaacatacctcacatcccttaaaaggaattcac 16883668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 87 - 224
Target Start/End: Complemental strand, 24262807 - 24262669
Alignment:
Q  87 gtaattaatgcaccattcgaaattt-acacatctcattcacaattttagtgcaataacctagattatcaaacatgctaatggaaattgcattttgcatag 185  Q
    ||||| |||||||||| |||||||| ||| | | ||| | | ||| ||||||||||||||||||||||||||||||| |||||||||  |||| || ||     
T  24262807 gtaatcaatgcaccatgcgaaattttacaaaccccatgctctattctagtgcaataacctagattatcaaacatgcttatggaaattaaatttcgcttaa 24262708  T
Q  186 gttcaggatcatatcacacatgccttaaaaggaattcac 224  Q
    |||| ||| |||| | ||||| |||||||||||||||||    
T  24262707 gttcgggaacatacctcacatcccttaaaaggaattcac 24262669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 226
Target Start/End: Original strand, 49090214 - 49090431
Alignment:
Q  10 cactagctaacgatacatgatcaattacagtaaaaccatctaaaatgtataaatcaaacatcttaaaacatttaagagtaattaatgcaccattcgaaat 109  Q
    ||||||||| |||| ||| | |||||||  |  |||||||||||||||||||| ||  ||| ||| | | |||||  ||||| |||||||||| ||||||    
T  49090214 cactagctaccgatgcattaccaattactatggaaccatctaaaatgtataaaccattcattttagaccctttaaccgtaatcaatgcaccatgcgaaat 49090313  T
Q  110 tt-acacatctcattcacaattttagtgcaataacctagattatcaaacatgctaatggaaattgcattttgcataggttcaggatcatatcacacatgc 208  Q
    || ||| | | ||| |  |||| ||||||||||||||||| ||||||||||||| | |||||||  |||| || || |||| ||| || | | ||||| |    
T  49090314 tttacaaaccccatgcttaattctagtgcaataacctagactatcaaacatgcttaaggaaattaaatttcgcttaagttcgggaacaaacctcacatcc 49090413  T
Q  209 cttaaaaggaattcacag 226  Q
    ||||||||||||||||||    
T  49090414 cttaaaaggaattcacag 49090431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 224
Target Start/End: Original strand, 18412184 - 18412399
Alignment:
Q  10 cactagctaacgatacatgatcaattacagtaaaaccatctaaaatgtataaatcaaacatcttaaaacatttaagagtaattaatgcaccattcgaaat 109  Q
    ||||||||| |||| ||| | |||||||  |  |||||||||||||||||||| ||  ||| ||| | |  ||||  ||||| |||||||||| ||||||    
T  18412184 cactagctaccgatgcattaccaattactatggaaccatctaaaatgtataaaccattcattttagaccccttaaccgtaatcaatgcaccatgcgaaat 18412283  T
Q  110 tt-acacatctcattcacaattttagtgcaataacctagattatcaaacatgctaatggaaattgcattttgcataggttcaggatcatatcacacatgc 208  Q
    || ||| | | ||| | ||||| |||||||||||||||||  |||||||||||| | |||||||  |||| || || |||| ||| || | | ||||| |    
T  18412284 tttacaaaccccatgctcaattctagtgcaataacctagaccatcaaacatgcttagggaaattaaatttcgcttaagttcgggaacaaacctcacatcc 18412383  T
Q  209 cttaaaaggaattcac 224  Q
    ||||||||||||||||    
T  18412384 cttaaaaggaattcac 18412399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 224
Target Start/End: Original strand, 21644640 - 21644778
Alignment:
Q  87 gtaattaatgcaccattcgaaattt-acacatctcattcacaattttagtgcaataacctagattatcaaacatgctaatggaaattgcattttgcatag 185  Q
    ||||| |||||||||| |||||||| ||| | | ||| | ||||| ||||||||||||||||| ||||||||||||| | |||||||  |||| || ||     
T  21644640 gtaatcaatgcaccatgcgaaattttacaaaccccatgctcaattctagtgcaataacctagactatcaaacatgcttagggaaattaaatttcgcttaa 21644739  T
Q  186 gttcaggatcatatcacacatgccttaaaaggaattcac 224  Q
    |||| ||| || | | ||||| |||||||||||||||||    
T  21644740 gttcgggaacaaacctcacatcccttaaaaggaattcac 21644778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 224
Target Start/End: Original strand, 21987479 - 21987661
Alignment:
Q  43 aaccatctaaaatgtataaatcaaacatcttaaaacatttaagagtaattaatgcaccattcgaaattt-acacatctcattcacaattttagtgcaata 141  Q
    |||||||||||||||||||| ||  ||| ||| | | |||||  ||||| |||||||||| |||||||| ||| | | ||| | ||||| ||||||||||    
T  21987479 aaccatctaaaatgtataaaccattcattttagatcctttaaccgtaatcaatgcaccatgcgaaattttacaaaccccatgctcaattctagtgcaata 21987578  T
Q  142 acctagattatcaaacatgctaatggaaattgcattttgcataggttcaggatcatatcacacatgccttaaaaggaattcac 224  Q
    ||||||| |||||||||| || | |||||||  |||| |  || |||| ||| || | | ||||| |||||||||||||||||    
T  21987579 acctagactatcaaacattcttagggaaattaaatttcgtttaagttcgggaacaaacctcacatcccttaaaaggaattcac 21987661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 172
Target Start/End: Complemental strand, 9186706 - 9186543
Alignment:
Q  10 cactagctaacgatacatgatcaattacagtaaaaccatctaaaatgtataaatcaaacatcttaaaacatttaagagtaattaatgcaccattcgaaat 109  Q
    ||||||| |||||| ||| | |||||||  |  |||||||||||||||||||| ||  ||| ||| | | |||||  ||||| |||||||||| ||||||    
T  9186706 cactagcaaacgatgcattaccaattactatggaaccatctaaaatgtataaaccattcattttagaccctttaaccgtaatcaatgcaccatgcgaaat 9186607  T
Q  110 tt-acacatctcattcacaattttagtgcaataacctagattatcaaacatgctaatggaaatt 172  Q
    || ||| | | ||| | ||||| ||||||||||||||| | ||||||||||||| | |||||||    
T  9186606 tttacaaaccccatgctcaattctagtgcaataacctatactatcaaacatgcttagggaaatt 9186543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 43 - 224
Target Start/End: Complemental strand, 24432849 - 24432667
Alignment:
Q  43 aaccatctaaaatgtataaatcaaacatcttaaaacatttaagagtaattaatgcaccattcgaaattt-acacatctcattcacaattttagtgcaata 141  Q
    |||||||||||||||||||| ||| ||| ||| | | |||||  ||||| |||||||||| |||||||| ||| | | ||| | ||||| |||| |||||    
T  24432849 aaccatctaaaatgtataaaccaatcattttagaccctttaaccgtaatcaatgcaccatgcgaaattttacaaaccccatgctcaattctagtacaata 24432750  T
Q  142 acctagattatcaaacatgctaatggaaattgcattttgcataggttcaggatcatatcacacatgccttaaaaggaattcac 224  Q
    ||||||| ||||||| ||||| |||||||||  |||| || || |||| ||| || | | ||||| |||||||||||||||||    
T  24432749 acctagactatcaaatatgcttatggaaattaaatttcgcttaagttcgggaacaaacctcacatcccttaaaaggaattcac 24432667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 87 - 224
Target Start/End: Complemental strand, 33332560 - 33332422
Alignment:
Q  87 gtaattaatgcaccattcgaaattt-acacatctcattcacaattttagtgcaataacctagattatcaaacatgctaatggaaattgcattttgcatag 185  Q
    ||||| |||||||||| |||||||| ||| | | ||| | | ||| ||||||||||||||||||||||||||||||| |||||||||  |||| || ||     
T  33332560 gtaatcaatgcaccatgcgaaattttacaaaccccatgctctattctagtgcaataacctagattatcaaacatgcttatggaaattaaatttcgcttaa 33332461  T
Q  186 gttcaggatcatatcacacatgccttaaaaggaattcac 224  Q
    |||| ||| || | | ||||| |||||||||||||||||    
T  33332460 gttcgggaacaaacctcacatcccttaaaaggaattcac 33332422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 87 - 224
Target Start/End: Complemental strand, 14739056 - 14738918
Alignment:
Q  87 gtaattaatgcaccattcgaaattt-acacatctcattcacaattttagtgcaataacctagattatcaaacatgctaatggaaattgcattttgcatag 185  Q
    ||||| |||||||||| |||||||| ||| | | ||| | | ||| ||||||||||||||||||||||||||||||| | |||||||  |||  || ||     
T  14739056 gtaatcaatgcaccatgcgaaattttacaaaccccatgctctattctagtgcaataacctagattatcaaacatgcttagggaaattaaattacgcttaa 14738957  T
Q  186 gttcaggatcatatcacacatgccttaaaaggaattcac 224  Q
    |||| ||| || | | ||||| |||||||||||||||||    
T  14738956 gttcgggaacaaacctcacatcccttaaaaggaattcac 14738918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 87 - 224
Target Start/End: Original strand, 29485190 - 29485328
Alignment:
Q  87 gtaattaatgcaccattcgaaattt-acacatctcattcacaattttagtgcaataacctagattatcaaacatgctaatggaaattgcattttgcatag 185  Q
    ||||| |||||||| | |||||||| ||| | ||||| | ||||| ||||||||||||||||| ||| ||||||||| | |||||||  |||| || ||     
T  29485190 gtaatcaatgcaccctgcgaaattttacaaacctcatgctcaattctagtgcaataacctagactattaaacatgcttagggaaattaaatttcgcttaa 29485289  T
Q  186 gttcaggatcatatcacacatgccttaaaaggaattcac 224  Q
    |||| ||| || | | ||||| |||||||||||||||||    
T  29485290 gttcgggaacaaacctcacatcccttaaaaggaattcac 29485328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 172
Target Start/End: Original strand, 24077553 - 24077619
Alignment:
Q  106 aaatttacacatctcattcacaattttagtgcaataacctagattatcaaacatgctaatggaaatt 172  Q
    ||||||||| | ||||| | ||||  |||| |||||||||||| ||||||||||||| |||||||||    
T  24077553 aaatttacaaacctcatgctcaatcctagtacaataacctagactatcaaacatgcttatggaaatt 24077619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 87 - 224
Target Start/End: Original strand, 8515697 - 8515835
Alignment:
Q  87 gtaattaatgcaccattcgaaattt-acacatctcattcacaattttagtgcaataacctagattatcaaacatgctaatggaaattgcattttgcatag 185  Q
    ||||| |||||||||| |||||||| ||| | | ||| | | ||| ||||||||||||||||||||||||||||||| |||||||||  |||| || ||     
T  8515697 gtaatcaatgcaccatgcgaaattttacaaaccccatgctctattctagtgcaataacctagattatcaaacatgcttatggaaattaaatttcgcttaa 8515796  T
Q  186 gttcaggatcatatcacacatgccttaaaaggaattcac 224  Q
    |||| ||| |||| | ||||| |||||||||||||||||    
T  8515797 gttcgggaacatacctcacatcccttaaaaggaattcac 8515835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 43 - 224
Target Start/End: Original strand, 16262921 - 16263103
Alignment:
Q  43 aaccatctaaaatgtataaatcaaacatcttaaaacatttaagagtaattaatgcaccattcgaaattt-acacatctcattcacaattttagtgcaata 141  Q
    |||||||||||||||||||| ||  ||| ||| | | |||||  || || ||||||||||||||||||| ||| | | ||| |  |||||||||||||||    
T  16262921 aaccatctaaaatgtataaaccattcattttagaccctttaatcgttatcaatgcaccattcgaaattttacaaaccccatgccaaattttagtgcaata 16263020  T
Q  142 acctagattatcaaacatgctaatggaaattgcattttgcataggttcaggatcatatcacacatgccttaaaaggaattcac 224  Q
    ||||||| ||||||||||||| | |||||||  |||| || || |||| ||| || | | ||||| |||||||||||||||||    
T  16263021 acctagactatcaaacatgcttagggaaattaaatttcgcttaagttcgggaacaaacctcacatcccttaaaaggaattcac 16263103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 87 - 224
Target Start/End: Original strand, 32478943 - 32479081
Alignment:
Q  87 gtaattaatgcaccattcgaaattt-acacatctcattcacaattttagtgcaataacctagattatcaaacatgctaatggaaattgcattttgcatag 185  Q
    ||||| |||||||||| |||||||| ||| | | ||| | | ||| ||||||||||||||||||||||||||||||| |||||||||  |||| || ||     
T  32478943 gtaatcaatgcaccatgcgaaattttacaaaccccatgctctattctagtgcaataacctagattatcaaacatgcttatggaaattaaatttcgcttaa 32479042  T
Q  186 gttcaggatcatatcacacatgccttaaaaggaattcac 224  Q
    |||| ||| |||| | ||||| |||||||||||||||||    
T  32479043 gttcgggaacatacctcacatcccttaaaaggaattcac 32479081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 224
Target Start/End: Original strand, 1309397 - 1309612
Alignment:
Q  10 cactagctaacgatacatgatcaattacagtaaaaccatctaaaatgtataaatcaaacatcttaaaacatttaagagtaattaatgcaccattcgaaat 109  Q
    ||||||||| |||| ||| | |||||||  |  |||||||||||||||||||| ||  ||| ||| | |  ||||  ||||| |||||||||| ||||||    
T  1309397 cactagctaccgatgcattaccaattactatggaaccatctaaaatgtataaaccattcattttagatcccttaaccgtaatcaatgcaccatgcgaaat 1309496  T
Q  110 tt-acacatctcattcacaattttagtgcaataacctagattatcaaacatgctaatggaaattgcattttgcataggttcaggatcatatcacacatgc 208  Q
    || ||| ||| ||| | ||||| ||||||||||||||||  ||||||||||||| | |||||||  |||  || || |||| ||| || | | ||||| |    
T  1309497 tttacaaatcccatgctcaattctagtgcaataacctaggctatcaaacatgcttagggaaattaaattacgcttaagttcgggaacaaacctcacatcc 1309596  T
Q  209 cttaaaaggaattcac 224  Q
    ||||||||||||||||    
T  1309597 cttaaaaggaattcac 1309612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 224
Target Start/End: Complemental strand, 2673704 - 2673566
Alignment:
Q  87 gtaattaatgcaccattcgaaattt-acacatctcattcacaattttagtgcaataacctagattatcaaacatgctaatggaaattgcattttgcatag 185  Q
    ||||| |||||||||| |||||||| ||| | | ||| | | ||| ||||||||||||||||||||||||||||||| |||||||||  |||| || ||     
T  2673704 gtaatcaatgcaccatgcgaaattttacaaaccccatgctctattctagtgcaataacctagattatcaaacatgcttatggaaattaaatttcgcttaa 2673605  T
Q  186 gttcaggatcatatcacacatgccttaaaaggaattcac 224  Q
    |||| |||  | | | ||||| |||||||||||||||||    
T  2673604 gttcgggaaaaaacctcacatcccttaaaaggaattcac 2673566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 87 - 172
Target Start/End: Complemental strand, 28490657 - 28490571
Alignment:
Q  87 gtaattaatgcaccattcgaaattt-acacatctcattcacaattttagtgcaataacctagattatcaaacatgctaatggaaatt 172  Q
    ||||| |||||||||| |||||||| ||| | | ||| | | ||| ||||||||||||||||||||||||||||||| | |||||||    
T  28490657 gtaatcaatgcaccatgcgaaattttacaaaccccatgctctattctagtgcaataacctagattatcaaacatgcttagggaaatt 28490571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 172
Target Start/End: Complemental strand, 9603291 - 9603245
Alignment:
Q  126 caattttagtgcaataacctagattatcaaacatgctaatggaaatt 172  Q
    ||||| ||||||||||||||||| ||||||||||||| | |||||||    
T  9603291 caattctagtgcaataacctagactatcaaacatgcttagggaaatt 9603245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 19347795 - 19348019
Alignment:
Q  1 gagatgcttcactagctaacgatacatgatcaattacagtaaaaccatctaaaatgtataaatcaaacatcttaaaacatttaagagtaattaatgcacc 100  Q
    |||||||  ||||||||| |||| ||| | |||||||  |  |||||||||||||||||||| ||  |||  || | |  ||||  ||||| ||||||||    
T  19347795 gagatgcaacactagctaccgatgcattaccaattactatggaaccatctaaaatgtataaaccattcattctagaccccttaatcgtaatcaatgcacc 19347894  T
Q  101 attcgaaattt-acacatctcattcacaattttagtgcaataacctagattatcaaacatgctaatggaaattgcattttgcataggttcaggatcatat 199  Q
    || |||||||| ||| | | ||| | | ||| ||||||||||||||||||||||||||||||| |||||||||  |||| || || |||| ||| || |     
T  19347895 atgcgaaattttacaaaccccatgctctattctagtgcaataacctagattatcaaacatgcttatggaaattaaatttcgcttaagttcgggaacaaac 19347994  T
Q  200 cacacatgccttaaaaggaattcac 224  Q
    | ||||| |||||||||||||||||    
T  19347995 ctcacatcccttaaaaggaattcac 19348019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 172
Target Start/End: Original strand, 25394529 - 25394575
Alignment:
Q  126 caattttagtgcaataacctagattatcaaacatgctaatggaaatt 172  Q
    ||||| ||||||||||||||||| ||||||||||||| | |||||||    
T  25394529 caattctagtgcaataacctagactatcaaacatgcttagggaaatt 25394575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 87 - 224
Target Start/End: Complemental strand, 15793 - 15655
Alignment:
Q  87 gtaattaatgcaccattcgaaattt-acacatctcattcacaattttagtgcaataacctagattatcaaacatgctaatggaaattgcattttgcatag 185  Q
    ||||| |||||||||| |||||||| ||| | | ||| | | ||| ||||||||||||||||||||||||||||||| |||||||||  |||| || ||     
T  15793 gtaatcaatgcaccatgcgaaattttacaaaccccatgctctattctagtgcaataacctagattatcaaacatgcttatggaaattaaatttcgcttaa 15694  T
Q  186 gttcaggatcatatcacacatgccttaaaaggaattcac 224  Q
    |||| ||| || | | ||||| |||||||||||||||||    
T  15693 gttcgggaacaaacctcacatcccttaaaaggaattcac 15655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 43 - 223
Target Start/End: Original strand, 1067 - 1247
Alignment:
Q  43 aaccatctaaaatgtataaatcaaacatcttaaaacatttaagagtaattaatgcaccattcgaaattt-acacatctcattcacaattttagtgcaata 141  Q
    |||||||||||||||||||| ||  ||| ||| | | |||||  ||||| |||||||||| |||||||| ||| | | ||| | ||||| ||||||||||    
T  1067 aaccatctaaaatgtataaaccattcattttagaccctttaaccgtaatcaatgcaccatgcgaaattttaca-accgcatgctcaattctagtgcaata 1165  T
Q  142 acctagattatcaaacatgctaatggaaattgcattttgcataggttcaggatcatatcacacatgccttaaaaggaattca 223  Q
    ||||||| ||||||||||||| | |||||||  |||| || || |||| ||| || | | ||||| ||||||||||||||||    
T  1166 acctagactatcaaacatgcttagggaaattaaatttcgcttaagttcgggaacaaacctcacatcccttaaaaggaattca 1247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 43 - 172
Target Start/End: Original strand, 9223 - 9352
Alignment:
Q  43 aaccatctaaaatgtataaatcaaacatcttaaaacatttaagagtaattaatgcaccattcgaaattt-acacatctcattcacaattttagtgcaata 141  Q
    |||||||||||||||||||| ||  ||| ||| | | |||||  ||||| |||||||||| |||||||| ||| | | ||| | ||||| ||||||||||    
T  9223 aaccatctaaaatgtataaaccattcattttagaccctttaaccgtaatcaatgcaccatgcgaaattttaca-accgcatgctcaattctagtgcaata 9321  T
Q  142 acctagattatcaaacatgctaatggaaatt 172  Q
    ||||||| ||||||||||||| | |||||||    
T  9322 acctagactatcaaacatgcttagggaaatt 9352  T

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Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 10 - 225
Target Start/End: Complemental strand, 9025359 - 9025143
Alignment:
Q  10 cactagctaacgatacatgatcaattacagtaaaaccatctaaaatgtataaatcaaacatcttaaaacatttaagagtaattaatgcaccattcgaaat 109  Q
    ||||||||  |||||||| | |||||||  || |||||||||||||||||||| ||  ||| ||| | | ||||||||||||||| ||||||| ||||||    
T  9025359 cactagctgccgatacattaccaattactatagaaccatctaaaatgtataaaccattcattttagaccctttaagagtaattaaagcaccatgcgaaat 9025260  T
Q  110 tt-acacatctcattcacaattttagtgcaataacctagattatcaaacatgctaatggaaattgcattttgcataggttcaggatcatatcacacatgc 208  Q
    || | | | | |||   ||||| || |||||||| ||||| ||||||||||| | | |||||||  |||| ||||| |||| ||| || | | ||||| |    
T  9025259 ttcataaaccccatattcaattctaatgcaataatctagactatcaaacatgtttagggaaattaaatttcgcataagttcgggaacaaacctcacatac 9025160  T
Q  209 cttaaaaggaattcaca 225  Q
    |||| ||||||||||||    
T  9025159 cttagaaggaattcaca 9025143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 224
Target Start/End: Original strand, 41396842 - 41396980
Alignment:
Q  87 gtaattaatgcaccattcgaaattt-acacatctcattcacaattttagtgcaataacctagattatcaaacatgctaatggaaattgcattttgcatag 185  Q
    ||||| |||||||||| |||||||| ||| | | ||| | | ||| ||||||||||||||||||| ||||||||||| |||||||||  |||| || ||     
T  41396842 gtaatcaatgcaccatgcgaaattttacaaaccccatgctctattctagtgcaataacctagattgtcaaacatgcttatggaaattaaatttcgcttaa 41396941  T
Q  186 gttcaggatcatatcacacatgccttaaaaggaattcac 224  Q
    |||| ||| || | | ||||| |||||||||||||||||    
T  41396942 gttcgggaacaaacctcacatcccttaaaaggaattcac 41396980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 10 - 234
Target Start/End: Complemental strand, 47100379 - 47100154
Alignment:
Q  10 cactagctaacgatacatgatcaattacagtaaaaccatctaaaatgtataaatcaaacatcttaaaacatttaagagtaattaatgcaccattcgaaat 109  Q
    ||||||||| |||| ||| | |||||||  |  |||||||||||||||||||| ||  ||| ||| | | |||||  ||||| ||| |||||| ||||||    
T  47100379 cactagctaccgatgcattaccaattactatggaaccatctaaaatgtataaaccattcattttagaccctttaatcgtaatcaatacaccatgcgaaat 47100280  T
Q  110 tt-acacatctcattcacaattttagtgcaataacctagattatcaaacatgctaatggaaattgcattttgcataggttcaggatcatatcacacatgc 208  Q
    || ||| | | ||| | ||||| ||||||||||||||||| ||||||||||||| | |||||||  |||| || || |||| ||| || | | ||||| |    
T  47100279 tttacaaaccccatgctcaattctagtgcaataacctagactatcaaacatgcttagggaaattaaatttcgcttaagttcgggaacaaacctcacatcc 47100180  T
Q  209 cttaaaaggaattcacagtgatcaaa 234  Q
     |||| |||||||||| || ||||||    
T  47100179 tttaataggaattcacggtcatcaaa 47100154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 9225974 - 9225750
Alignment:
Q  1 gagatgcttcactagctaacgatacatgatcaattacagtaaaaccatctaaaatgtataaatcaaacatcttaaaacatttaagagtaattaatgcacc 100  Q
    |||||||  ||||||||| |||| ||| | |||||||  |  |||||||||||||||||||| ||  |||  || | |  ||||  ||||| ||||||||    
T  9225974 gagatgcaacactagctaccgatgcattaccaattactatggaaccatctaaaatgtataaaccattcattctagaccccttaaccgtaatcaatgcacc 9225875  T
Q  101 attcgaaattt-acacatctcattcacaattttagtgcaataacctagattatcaaacatgctaatggaaattgcattttgcataggttcaggatcatat 199  Q
    || |||||||| ||| | | ||| | | ||| ||||||||||||||||||||||||||||||| | |||||||  |||  || || |||| ||| || |     
T  9225874 atgcgaaattttacaaaccccatgctctattctagtgcaataacctagattatcaaacatgcttagggaaattaaattacgcttaagttcgggaacaaac 9225775  T
Q  200 cacacatgccttaaaaggaattcac 224  Q
    | ||||| |||||||||||||||||    
T  9225774 ctcacatcccttaaaaggaattcac 9225750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 87 - 172
Target Start/End: Complemental strand, 16625477 - 16625391
Alignment:
Q  87 gtaattaatgcaccattcgaaa-tttacacatctcattcacaattttagtgcaataacctagattatcaaacatgctaatggaaatt 172  Q
    ||||| |||||||||| ||||| |||||| | ||||| | ||||| ||||||||||||||||| ||||||||||||| | |||||||    
T  16625477 gtaatcaatgcaccatgcgaaactttacaaacctcatgctcaattctagtgcaataacctagactatcaaacatgcttagggaaatt 16625391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 181
Target Start/End: Original strand, 5146547 - 5146602
Alignment:
Q  126 caattttagtgcaataacctagattatcaaacatgctaatggaaattgcattttgc 181  Q
    ||||| ||||||||||||||||| ||||||||||||| | |||||||  |||||||    
T  5146547 caattctagtgcaataacctagactatcaaacatgcttagggaaattaaattttgc 5146602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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