View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16991_low_6 (Length: 653)
Name: NF16991_low_6
Description: NF16991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16991_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 437; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 17 - 477
Target Start/End: Original strand, 39272783 - 39273243
Alignment:
| Q |
17 |
aatgtatcagtgtcgatattgtgtacggtgtatgtgtcagcttgaactaaaacaataaaacaataaagagcatacttgcaaagattgcagcagcaaaagc |
116 |
Q |
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| T |
39272783 |
aatgtatcagtgtcggtattgtgtaaggtgtatgtgtcagcttgaactaaaacaataaaactataaagagcatacttgcaaagattgcagcagcaaaagc |
39272882 |
T |
|
| Q |
117 |
ctcagtttgaccacaacagatagctacatccgtctcagaatcaatatctaaaccatgcatttcctttactatcttagccaagtgttcacatataccttgc |
216 |
Q |
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| T |
39272883 |
ctcagtttgaccacaacagatagctacatccgtctcagagtcaatatctaaaccatgcatttcctttactatcttagccaagtgttcacatataccttgc |
39272982 |
T |
|
| Q |
217 |
acatgccttgaaatacaaagagtagatagattctatgaattggtgaaaaatgtattattagtttgagttgtgtgtgaagaaaaagaaaaacctgtattgg |
316 |
Q |
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| T |
39272983 |
acatgccttgaaatacaaagagtagatagattctatgaattggtgaaaaatgtattattagtttgagttgtgtgtaaagaaaaagaaaaacctgtattgg |
39273082 |
T |
|
| Q |
317 |
ttgaggtcggaattgatggcggaaacggcggcgtttttgatgtggagaggagcagggaagtcagggaagccttcagctaggttgatagcattgcatctct |
416 |
Q |
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| T |
39273083 |
ttgaggtcggaattaatggcggaaacggcggcgtttttgatgtggagaggagcagggaagtcagggaagccttcagctaggttgatagcattgcatctct |
39273182 |
T |
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| Q |
417 |
gagcaaggtgagagagttcttgaatgggtgatgatgtaagcttctttgccgcacgcgacaa |
477 |
Q |
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| T |
39273183 |
gagcaaggtgagagagttcttgaatgggtgatgatgtaagcttctttgccgcacgcgacaa |
39273243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 514 - 619
Target Start/End: Original strand, 39273272 - 39273382
Alignment:
| Q |
514 |
atcactatccctgttacacaactact-----atactgtgtgttgaattggttttaagcttgctggttttttagttaaattttaaaattcaatatgttgtc |
608 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39273272 |
atcactatccctgttacacaactactatactatactgtgtgttgaatttgttttaaggttgctggttttttagttaaattttaaaattaaatatgttgtc |
39273371 |
T |
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| Q |
609 |
ataaaattatg |
619 |
Q |
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| T |
39273372 |
ataaaattatg |
39273382 |
T |
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