View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16991_low_61 (Length: 243)

Name: NF16991_low_61
Description: NF16991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16991_low_61
NF16991_low_61
[»] chr1 (6 HSPs)
chr1 (1-227)||(32184683-32184909)
chr1 (146-188)||(5376526-5376568)
chr1 (146-176)||(21038086-21038116)
chr1 (144-178)||(41877494-41877528)
chr1 (146-186)||(6427343-6427383)
chr1 (146-186)||(21057776-21057816)
[»] chr7 (5 HSPs)
chr7 (144-186)||(5235979-5236021)
chr7 (144-178)||(8160417-8160451)
chr7 (144-178)||(27093437-27093471)
chr7 (144-178)||(27184830-27184864)
chr7 (146-187)||(28155562-28155603)
[»] chr4 (7 HSPs)
chr4 (144-184)||(55941027-55941067)
chr4 (95-140)||(35952562-35952607)
chr4 (149-177)||(5111644-5111672)
chr4 (107-143)||(30522858-30522894)
chr4 (142-186)||(33950129-33950173)
chr4 (144-176)||(43240995-43241027)
chr4 (143-171)||(43506176-43506204)
[»] chr3 (3 HSPs)
chr3 (146-206)||(11610494-11610554)
chr3 (146-186)||(8039861-8039901)
chr3 (146-186)||(47362555-47362595)
[»] chr8 (3 HSPs)
chr8 (140-174)||(38278195-38278229)
chr8 (95-128)||(36107731-36107764)
chr8 (146-186)||(34897078-34897118)
[»] chr5 (5 HSPs)
chr5 (144-178)||(36838544-36838578)
chr5 (142-174)||(2236807-2236839)
chr5 (146-178)||(18592074-18592106)
chr5 (146-178)||(19746718-19746750)
chr5 (146-178)||(27932236-27932268)
[»] scaffold0049 (1 HSPs)
scaffold0049 (146-179)||(63773-63806)
[»] chr6 (5 HSPs)
chr6 (95-140)||(24645554-24645599)
chr6 (146-178)||(322520-322552)
chr6 (146-186)||(7265619-7265659)
chr6 (146-178)||(9658880-9658912)
chr6 (146-178)||(32511692-32511724)
[»] scaffold0004 (1 HSPs)
scaffold0004 (146-178)||(92808-92840)


Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 32184909 - 32184683
Alignment:
Q  1 aacagttagtgggtataaccactatttttcagcaatactgccatgagtttccaaatggtatagtattgcataaatgtttggcttatctatcatttatgaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32184909 aacagttagtgggtataaccactatttttcagcaatactgccatgagtttccaaatggtatagtattgcataaatgtttggcttatctatcatttatgaa 32184810  T
Q  101 gcacatacactatttggattagacgtgtctcggtgtcggatattaaattatgtaattttcttaaattattagcggtgttgacgtgttactatttgtattg 200  Q
    | ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||    
T  32184809 gtacatacactatttggattagacgtgtcccggtgtcggatattaaattatataatttttttaaattattagcggtgttgacgtgttactatttgtgttg 32184710  T
Q  201 tgtctgttgttcgtgtccgtatccgta 227  Q
    |||||  ||||||||||| ||||||||    
T  32184709 tgtctcgtgttcgtgtccatatccgta 32184683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 5376526 - 5376568
Alignment:
Q  146 aattatgtaattttcttaaattattagcggtgttgacgtgtta 188  Q
    |||||||| |||||||||||||||||||||||| | |||||||    
T  5376526 aattatgttattttcttaaattattagcggtgtcggcgtgtta 5376568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 176
Target Start/End: Complemental strand, 21038116 - 21038086
Alignment:
Q  146 aattatgtaattttcttaaattattagcggt 176  Q
    |||||||||||||||||||||||||||||||    
T  21038116 aattatgtaattttcttaaattattagcggt 21038086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 178
Target Start/End: Original strand, 41877494 - 41877528
Alignment:
Q  144 taaattatgtaattttcttaaattattagcggtgt 178  Q
    |||||||||||||||||| ||||||||||||||||    
T  41877494 taaattatgtaattttctcaaattattagcggtgt 41877528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 186
Target Start/End: Complemental strand, 6427383 - 6427343
Alignment:
Q  146 aattatgtaattttcttaaattattagcggtgttgacgtgt 186  Q
    |||||||| ||||||| |||||||||||||||||| |||||    
T  6427383 aattatgtgattttctcaaattattagcggtgttggcgtgt 6427343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 186
Target Start/End: Complemental strand, 21057816 - 21057776
Alignment:
Q  146 aattatgtaattttcttaaattattagcggtgttgacgtgt 186  Q
    |||||||| ||||||| |||||||||||||||| |||||||    
T  21057816 aattatgttattttctaaaattattagcggtgtcgacgtgt 21057776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 186
Target Start/End: Complemental strand, 5236021 - 5235979
Alignment:
Q  144 taaattatgtaattttcttaaattattagcggtgttgacgtgt 186  Q
    |||||||| |||||||||||||||||||||||||| |||||||    
T  5236021 taaattatataattttcttaaattattagcggtgtcgacgtgt 5235979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 178
Target Start/End: Complemental strand, 8160451 - 8160417
Alignment:
Q  144 taaattatgtaattttcttaaattattagcggtgt 178  Q
    |||||||||||||||||||||||||||||||||||    
T  8160451 taaattatgtaattttcttaaattattagcggtgt 8160417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 178
Target Start/End: Original strand, 27093437 - 27093471
Alignment:
Q  144 taaattatgtaattttcttaaattattagcggtgt 178  Q
    |||||||||| ||||||||||||||||||||||||    
T  27093437 taaattatgtgattttcttaaattattagcggtgt 27093471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 178
Target Start/End: Complemental strand, 27184864 - 27184830
Alignment:
Q  144 taaattatgtaattttcttaaattattagcggtgt 178  Q
    |||||||||| ||||||||||||||||||||||||    
T  27184864 taaattatgtgattttcttaaattattagcggtgt 27184830  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 187
Target Start/End: Complemental strand, 28155603 - 28155562
Alignment:
Q  146 aattatgtaattttcttaaattattagcggtgttgacgtgtt 187  Q
    |||||||||||||||| |||||||||||||||| | ||||||    
T  28155603 aattatgtaattttctcaaattattagcggtgtcggcgtgtt 28155562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 55941027 - 55941067
Alignment:
Q  144 taaattatgtaattttcttaaattattagcggtgttgacgt 184  Q
    ||||||||||||||||||||||||||||  |||||||||||    
T  55941027 taaattatgtaattttcttaaattattattggtgttgacgt 55941067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 35952562 - 35952607
Alignment:
Q  95 tatgaagcacatacactatttggattagacgtgtctcggtgtcgga 140  Q
    |||| ||||||||||||  ||||||||||||||||| |||||||||    
T  35952562 tatggagcacatacactcattggattagacgtgtcttggtgtcgga 35952607  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 177
Target Start/End: Complemental strand, 5111672 - 5111644
Alignment:
Q  149 tatgtaattttcttaaattattagcggtg 177  Q
    |||||||||||||||||||||||||||||    
T  5111672 tatgtaattttcttaaattattagcggtg 5111644  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 143
Target Start/End: Original strand, 30522858 - 30522894
Alignment:
Q  107 acactatttggattagacgtgtctcggtgtcggatat 143  Q
    ||||| ||||||||||||||||||||||||| |||||    
T  30522858 acactctttggattagacgtgtctcggtgtcagatat 30522894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 33950173 - 33950129
Alignment:
Q  142 attaaattatgtaattttcttaaattattagcggtgttgacgtgt 186  Q
    |||||||||||| ||||||| ||||||||||||| ||||| ||||    
T  33950173 attaaattatgtgattttctcaaattattagcggcgttgaagtgt 33950129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 176
Target Start/End: Original strand, 43240995 - 43241027
Alignment:
Q  144 taaattatgtaattttcttaaattattagcggt 176  Q
    |||||||| ||||||||||||||||||||||||    
T  43240995 taaattatataattttcttaaattattagcggt 43241027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 171
Target Start/End: Complemental strand, 43506204 - 43506176
Alignment:
Q  143 ttaaattatgtaattttcttaaattatta 171  Q
    |||||||||||||||||||||||||||||    
T  43506204 ttaaattatgtaattttcttaaattatta 43506176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 11610554 - 11610494
Alignment:
Q  146 aattatgtaattttcttaaattattagcggtgttgacgtgttactatttgtattgtgtctg 206  Q
    |||||||| ||||| |||||||||||||||||||| ||||| | ||| ||| |||||||||    
T  11610554 aattatgtgatttttttaaattattagcggtgttggcgtgtcagtatctgtgttgtgtctg 11610494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 186
Target Start/End: Original strand, 8039861 - 8039901
Alignment:
Q  146 aattatgtaattttcttaaattattagcggtgttgacgtgt 186  Q
    |||||| ||||||||| |||||||||||||||||| |||||    
T  8039861 aattatataattttctcaaattattagcggtgttggcgtgt 8039901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 186
Target Start/End: Complemental strand, 47362595 - 47362555
Alignment:
Q  146 aattatgtaattttcttaaattattagcggtgttgacgtgt 186  Q
    ||||||||||||||||||||||||||  | |||||||||||    
T  47362595 aattatgtaattttcttaaattattactgatgttgacgtgt 47362555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 174
Target Start/End: Original strand, 38278195 - 38278229
Alignment:
Q  140 atattaaattatgtaattttcttaaattattagcg 174  Q
    |||||||||||||| ||||||||||||||||||||    
T  38278195 atattaaattatgtgattttcttaaattattagcg 38278229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 128
Target Start/End: Complemental strand, 36107764 - 36107731
Alignment:
Q  95 tatgaagcacatacactatttggattagacgtgt 128  Q
    ||||||||||||||||| ||||||||||||||||    
T  36107764 tatgaagcacatacactctttggattagacgtgt 36107731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 186
Target Start/End: Complemental strand, 34897118 - 34897078
Alignment:
Q  146 aattatgtaattttcttaaattattagcggtgttgacgtgt 186  Q
    |||||||| ||||||| |||||||||||||||| |||||||    
T  34897118 aattatgtgattttctcaaattattagcggtgtcgacgtgt 34897078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 178
Target Start/End: Complemental strand, 36838578 - 36838544
Alignment:
Q  144 taaattatgtaattttcttaaattattagcggtgt 178  Q
    |||||||||||||||||| ||||||||||||||||    
T  36838578 taaattatgtaattttctcaaattattagcggtgt 36838544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 174
Target Start/End: Original strand, 2236807 - 2236839
Alignment:
Q  142 attaaattatgtaattttcttaaattattagcg 174  Q
    |||||||||| ||||||||||||||||||||||    
T  2236807 attaaattatataattttcttaaattattagcg 2236839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 178
Target Start/End: Complemental strand, 18592106 - 18592074
Alignment:
Q  146 aattatgtaattttcttaaattattagcggtgt 178  Q
    |||||||||||||||||||| ||||||||||||    
T  18592106 aattatgtaattttcttaaaatattagcggtgt 18592074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 178
Target Start/End: Original strand, 19746718 - 19746750
Alignment:
Q  146 aattatgtaattttcttaaattattagcggtgt 178  Q
    |||||||||||||||| ||||||||||||||||    
T  19746718 aattatgtaattttctcaaattattagcggtgt 19746750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 178
Target Start/End: Complemental strand, 27932268 - 27932236
Alignment:
Q  146 aattatgtaattttcttaaattattagcggtgt 178  Q
    |||||||||||||||| ||||||||||||||||    
T  27932268 aattatgtaattttctcaaattattagcggtgt 27932236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 179
Target Start/End: Complemental strand, 63806 - 63773
Alignment:
Q  146 aattatgtaattttcttaaattattagcggtgtt 179  Q
    |||||||||||||||| |||||||||||||||||    
T  63806 aattatgtaattttctcaaattattagcggtgtt 63773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 24645599 - 24645554
Alignment:
Q  95 tatgaagcacatacactatttggattagacgtgtctcggtgtcgga 140  Q
    ||||||||||| ||||| || ||||||||||||||| |||||||||    
T  24645599 tatgaagcacagacactcttcggattagacgtgtcttggtgtcgga 24645554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 178
Target Start/End: Complemental strand, 322552 - 322520
Alignment:
Q  146 aattatgtaattttcttaaattattagcggtgt 178  Q
    ||||||||||||||||||||||||||| |||||    
T  322552 aattatgtaattttcttaaattattagtggtgt 322520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 186
Target Start/End: Original strand, 7265619 - 7265659
Alignment:
Q  146 aattatgtaattttcttaaattattagcggtgttgacgtgt 186  Q
    |||||||| ||||||| |||||||||||||||||| |||||    
T  7265619 aattatgtgattttctcaaattattagcggtgttggcgtgt 7265659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 178
Target Start/End: Complemental strand, 9658912 - 9658880
Alignment:
Q  146 aattatgtaattttcttaaattattagcggtgt 178  Q
    |||||||| ||||||||||||||||||||||||    
T  9658912 aattatgtgattttcttaaattattagcggtgt 9658880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 178
Target Start/End: Original strand, 32511692 - 32511724
Alignment:
Q  146 aattatgtaattttcttaaattattagcggtgt 178  Q
    |||||||| ||||||||||||||||||||||||    
T  32511692 aattatgtgattttcttaaattattagcggtgt 32511724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 178
Target Start/End: Complemental strand, 92840 - 92808
Alignment:
Q  146 aattatgtaattttcttaaattattagcggtgt 178  Q
    |||||||||||||||| ||||||||||||||||    
T  92840 aattatgtaattttctcaaattattagcggtgt 92808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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