View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16991_low_62 (Length: 243)

Name: NF16991_low_62
Description: NF16991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16991_low_62
NF16991_low_62
[»] chr3 (4 HSPs)
chr3 (6-147)||(44786277-44786417)
chr3 (169-227)||(24563053-24563111)
chr3 (169-227)||(8016668-8016726)
chr3 (182-227)||(8018806-8018851)
[»] scaffold0002 (1 HSPs)
scaffold0002 (169-227)||(495532-495590)
[»] chr7 (2 HSPs)
chr7 (168-227)||(4246382-4246441)
chr7 (169-227)||(4241788-4241846)
[»] chr8 (1 HSPs)
chr8 (169-227)||(12463177-12463235)
[»] chr2 (2 HSPs)
chr2 (169-227)||(40088228-40088286)
chr2 (169-227)||(40092821-40092879)
[»] chr1 (2 HSPs)
chr1 (169-225)||(8192465-8192521)
chr1 (169-227)||(8189284-8189342)


Alignment Details
Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 6 - 147
Target Start/End: Complemental strand, 44786417 - 44786277
Alignment:
Q  6 tgagatgaatcatcatattaatcgagtcaatttgtagttgcggacacctctactttttaagaatttgtttgttttagattttgaagccaatttaaaatct 105  Q
    |||| ||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  44786417 tgagttgaatcatcatattaatcgagtcaatttgtacttacggacacctctactttt-aagaatttgtttgttttagattttgaagccaatttaaaatct 44786319  T
Q  106 tgttgagtggcaggaagaggctgctcctaaaaaccttgaaat 147  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  44786318 tgttgagtggcaggaagaggctgctcctaaaaaccttgaaat 44786277  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 24563111 - 24563053
Alignment:
Q  169 tgtaaaagaaaatggtataatggtttatttcattgatatgaaagtagggaatatataca 227  Q
    ||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||    
T  24563111 tgtaaaagaaaatggtatactggtatatttcattgatatggaagtagggaatatataca 24563053  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 8016726 - 8016668
Alignment:
Q  169 tgtaaaagaaaatggtataatggtttatttcattgatatgaaagtagggaatatataca 227  Q
    |||||||||||| |||||| | || ||||||||||||||||||||||||||||||||||    
T  8016726 tgtaaaagaaaagggtatactagtgtatttcattgatatgaaagtagggaatatataca 8016668  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 8018851 - 8018806
Alignment:
Q  182 ggtataatggtttatttcattgatatgaaagtagggaatatataca 227  Q
    |||||| |||| ||||| ||||||||||||||||||||||||||||    
T  8018851 ggtatactggtgtatttaattgatatgaaagtagggaatatataca 8018806  T

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Target: scaffold0002 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 495590 - 495532
Alignment:
Q  169 tgtaaaagaaaatggtataatggtttatttcattgatatgaaagtagggaatatataca 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  495590 tgtaaaagaaaatggtataatggtttatttcattgatatgaaagtagggaatatataca 495532  T

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Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 4246441 - 4246382
Alignment:
Q  168 ttgtaaaagaaaatggtataatggtttatttcattgatatgaaagtagggaatatataca 227  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4246441 ttgtaaaagaaaatggtataatggtgtatttcattgatatgaaagtagggaatatataca 4246382  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 4241846 - 4241788
Alignment:
Q  169 tgtaaaagaaaatggtataatggtttatttcattgatatgaaagtagggaatatataca 227  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4241846 tgtaaaagaaaatggtataatggtgtatttcattgatatgaaagtagggaatatataca 4241788  T

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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 12463235 - 12463177
Alignment:
Q  169 tgtaaaagaaaatggtataatggtttatttcattgatatgaaagtagggaatatataca 227  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12463235 tgtaaaagaaaatggtataatggtatatttcattgatatgaaagtagggaatatataca 12463177  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 40088286 - 40088228
Alignment:
Q  169 tgtaaaagaaaatggtataatggtttatttcattgatatgaaagtagggaatatataca 227  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  40088286 tgtaaaagaaaatggtataatggtgtatttcattgatatgaaagtagggaatatataca 40088228  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 40092879 - 40092821
Alignment:
Q  169 tgtaaaagaaaatggtataatggtttatttcattgatatgaaagtagggaatatataca 227  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  40092879 tgtaaaagaaaatggtataatggtgtatttcattgatatgaaagtagggaatatataca 40092821  T

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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 8192465 - 8192521
Alignment:
Q  169 tgtaaaagaaaatggtataatggtttatttcattgatatgaaagtagggaatatata 225  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  8192465 tgtaaaagaaaatggtatactggtgtatttcattgatatgaaagtagggaatatata 8192521  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 8189284 - 8189342
Alignment:
Q  169 tgtaaaagaaaatggtataatggtttatttcattgatatgaaagtagggaatatataca 227  Q
    ||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||    
T  8189284 tgtaaaagaaaatggtatcctggtgtatttcattgatatgaaagtagggaatatataca 8189342  T

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