View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16991_low_63 (Length: 242)
Name: NF16991_low_63
Description: NF16991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16991_low_63 |
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Alignment Details
Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 24 - 232
Target Start/End: Complemental strand, 1684414 - 1684214
Alignment:
| Q |
24 |
aacttcctcaatggactttgctggacaacatatgctctgctccacccctttgacatttatgttctggtaattcatttaatttatattcctatagtattgt |
123 |
Q |
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| T |
1684414 |
aacttcctcaatggactttgctggacaacatatgctctgctccatccctttgacctttatgttctggtaatt---------tatattcctatagtattgt |
1684324 |
T |
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| Q |
124 |
tgtgacttgtgagttaataattggatgaatgatttatacttaacccatgtt-attaatatacatttttactgattattgcagatcagcaatggtattgga |
222 |
Q |
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| T |
1684323 |
tgtgacttgtgagttaataattggatgaatgatttatacttaacccatattaattaatatacactttcactgactactgcagatcagcaatggtattgga |
1684224 |
T |
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| Q |
223 |
gtaatctctg |
232 |
Q |
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|||||||||| |
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| T |
1684223 |
gtaatctctg |
1684214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 1694854 - 1694635
Alignment:
| Q |
19 |
ttaccaacttcctcaatggactttgctggacaacatatgctctgctccacccctttgacatttatgttctggtaattcatttaatttatattcctatagt |
118 |
Q |
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| T |
1694854 |
ttaccaacttcctcaatggactttgctggacaacatatgctctgctccacccctttgacatttatgttctggtaatt---------tatattcctatagt |
1694764 |
T |
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| Q |
119 |
attgttgtgacttgtgagttaataattggatg---------------aatgatttatacttaacccatgttattaatatacatttttactgattattgca |
203 |
Q |
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| T |
1694763 |
attgttgtgatttgtgagttaataattgtatgtaattcaattggattaaagatttatacttaacccatgttattaatatacatttttactgattattgca |
1694664 |
T |
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| Q |
204 |
gatcagcaatggtattggagtaatctctg |
232 |
Q |
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| T |
1694663 |
gatcagtaatggtattggagtaatctctg |
1694635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 1699944 - 1699864
Alignment:
| Q |
21 |
accaacttcctcaatggactttgctggacaacatatgctctgctccacccctttgacatttatgttctggtaattcattta |
101 |
Q |
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||||||||||||||||| | |||||||||||||||||||| ||||||| || || |||||||| |||||||| ||||| |
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| T |
1699944 |
accaacttcctcaatggtttgtgctggacaacatatgctctcatccacccattggatatttatgtcttggtaattaattta |
1699864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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