View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16991_low_66 (Length: 237)

Name: NF16991_low_66
Description: NF16991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16991_low_66
NF16991_low_66
[»] chr3 (18 HSPs)
chr3 (20-219)||(2748460-2748659)
chr3 (26-216)||(2856293-2856483)
chr3 (26-213)||(2839083-2839270)
chr3 (20-216)||(2768536-2768730)
chr3 (25-215)||(2789824-2790014)
chr3 (25-210)||(2806732-2806917)
chr3 (31-203)||(2818035-2818207)
chr3 (33-216)||(2796826-2797009)
chr3 (31-216)||(5412374-5412557)
chr3 (28-204)||(2758691-2758867)
chr3 (32-102)||(3200526-3200596)
chr3 (32-102)||(3357852-3357922)
chr3 (50-101)||(3311128-3311179)
chr3 (50-101)||(3322727-3322778)
chr3 (40-95)||(22104280-22104335)
chr3 (41-98)||(3304440-3304497)
chr3 (40-116)||(22621774-22621850)
chr3 (55-107)||(30990147-30990199)
[»] scaffold0691 (1 HSPs)
scaffold0691 (22-198)||(6631-6807)
[»] chr1 (2 HSPs)
chr1 (26-121)||(34975042-34975137)
chr1 (32-98)||(41947701-41947767)


Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 20 - 219
Target Start/End: Complemental strand, 2748659 - 2748460
Alignment:
Q  20 cgttagtgtctgcttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaaatctctgtgtac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2748659 cgttagtgtctgcttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaaatctctgtgtac 2748560  T
Q  120 acttctcagaagatttgtttcttcttttaggaactggaacacttcccccaggacaaacgatactgcagtttctgccatttcactctcatctcatatttct 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2748559 acttctcagaagatttgtttcttcttttaggaactggaacacttcccccaggacaaacgatactgcagtttctgccatttcactctcatctcatatttct 2748460  T

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Target: chr3; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 26 - 216
Target Start/End: Original strand, 2856293 - 2856483
Alignment:
Q  26 tgtctgcttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaaatctctgtgtacacttct 125  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  2856293 tgtctgcttcatccgcagcccttatgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaaatctctgtgtacacctct 2856392  T
Q  126 cagaagatttgtttcttcttttaggaactggaacacttcccccaggacaaacgatactgcagtttctgccatttcactctcatctcatatt 216  Q
    || ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||| |||||||    
T  2856393 caaaagatttgtttcttcttttaggaactggaacacttcccccagggcaaacaatactgcagtttctgccatttaactctcatatcatatt 2856483  T

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Target: chr3; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 26 - 213
Target Start/End: Original strand, 2839083 - 2839270
Alignment:
Q  26 tgtctgcttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaaatctctgtgtacacttct 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||| |||    
T  2839083 tgtctgcttcatccgcagcccttctgtctgcatctttgaggaagactagaatgatctcaagttcatctttgatatctgaaaaatctctgtgtacacctct 2839182  T
Q  126 cagaagatttgtttcttcttttaggaactggaacacttcccccaggacaaacgatactgcagtttctgccatttcactctcatctcat 213  Q
    ||||||||||||||||||||||||||| | |||||||||||| ||| ||||| |||||||||| |||||||||| |||||||| ||||    
T  2839183 cagaagatttgtttcttcttttaggaatttgaacacttcccctagggcaaacaatactgcagtctctgccatttaactctcatatcat 2839270  T

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Target: chr3; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 20 - 216
Target Start/End: Complemental strand, 2768730 - 2768536
Alignment:
Q  20 cgttagtgtctgcttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaaatctctgtgtac 119  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2768730 cgttggtgtctgcttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaaatctctgtgtac 2768631  T
Q  120 acttctcagaagatttgtttcttcttttaggaactggaacacttcccccaggacaaacgatactgcagtttctgccatttcactctcatctcatatt 216  Q
    ||  ||||| ||||||||||||||||||||||| ||||| |||| ||| ||  ||||  |||| |||||||||||||||| |  |||||||||||||    
T  2768630 accactcagcagatttgtttcttcttttaggaattggaaaacttgcccaagagcaaataatacagcagtttctgccatttta--ctcatctcatatt 2768536  T

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Target: chr3; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 25 - 215
Target Start/End: Complemental strand, 2790014 - 2789824
Alignment:
Q  25 gtgtctgcttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaaatctctgtgtacacttc 124  Q
    |||||||||||||| ||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||  |    
T  2790014 gtgtctgcttcatctgcagctcttatatctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctaaaaaatctttgtgcacaccac 2789915  T
Q  125 tcagaagatttgtttcttcttttaggaactggaacacttcccccaggacaaacgatactgcagtttctgccatttcactctcatctcatat 215  Q
    |||| ||||||||||||||||||||||| |  ||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||    
T  2789914 tcaggagatttgtttcttcttttaggaattccaacacttcccccaggacaaataatactgcagtttctgccatttcagtctcatctcatat 2789824  T

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Target: chr3; HSP #6
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 25 - 210
Target Start/End: Complemental strand, 2806917 - 2806732
Alignment:
Q  25 gtgtctgcttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaaatctctgtgtacacttc 124  Q
    |||||||||||||| || || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |     
T  2806917 gtgtctgcttcatctgctgctcttctatctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaattctgtgtgtacacctt 2806818  T
Q  125 tcagaagatttgtttcttcttttaggaactggaacacttcccccaggacaaacgatactgcagtttctgccatttcactctcatct 210  Q
    | ||||||||||||||||||||||||||  ||||||||||  | ||| ||||  ||||||||||||||||||||||||||||||||    
T  2806817 ttagaagatttgtttcttcttttaggaatcggaacacttcatcaagggcaaataatactgcagtttctgccatttcactctcatct 2806732  T

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Target: chr3; HSP #7
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 31 - 203
Target Start/End: Complemental strand, 2818207 - 2818035
Alignment:
Q  31 gcttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaaatctctgtgtacacttctcagaa 130  Q
    |||||||| || |||||||| ||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||| ||||||||    
T  2818207 gcttcatctgctgcccttctatctgcatctttgaggaagacttggatgctttctagttcatctttgatgtctgaaaaatctctgtgtacacctctcagaa 2818108  T
Q  131 gatttgtttcttcttttaggaactggaacacttcccccaggacaaacgatactgcagtttctgccatttcact 203  Q
    | ||||||||||||||||||||||| |||||||||  || | |  | ||||||||||||||||||||||||||    
T  2818107 gctttgtttcttcttttaggaactgaaacacttccgacaaggctgatgatactgcagtttctgccatttcact 2818035  T

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Target: chr3; HSP #8
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 33 - 216
Target Start/End: Complemental strand, 2797009 - 2796826
Alignment:
Q  33 ttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaaatctctgtgtacacttctcagaaga 132  Q
    |||||| ||||| ||| | ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||| ||||  ||||| |||    
T  2797009 ttcatctgcagctcttgtatctgcatctttgaggaaaacttgaatgctctcaagttcatctgtgatgtctgaaaaatctttgtgcacacgactcagcaga 2796910  T
Q  133 tttgtttcttcttttaggaactggaacacttcccccaggacaaacgatactgcagtttctgccatttcactctcatctcatatt 216  Q
    |||||||||||||||||||| |  ||||||| ||||||| ||||  |||||| |||||||||||||||||||||||||||||||    
T  2796909 tttgtttcttcttttaggaattcaaacactttccccagggcaaataatactgaagtttctgccatttcactctcatctcatatt 2796826  T

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Target: chr3; HSP #9
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 31 - 216
Target Start/End: Complemental strand, 5412557 - 5412374
Alignment:
Q  31 gcttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaaatctctgtgtacacttctcagaa 130  Q
    |||||||| ||||||||| ||||||||||||||||||||  ||||||| | || ||||||||||||||||||||||||  |||||||| || | ||||      
T  5412557 gcttcatctgcagcccttttgtctgcatctttgaggaaggattgaatgatttctagttcatctttgatgtctgaaaaa--tctgtgtatacctttcagcc 5412460  T
Q  131 gatttgtttcttcttttaggaactggaacacttcccccaggacaaacgatactgcagtttctgccatttcactctcatctcatatt 216  Q
    ||||||||||||||| |||||| ||||||| || ||| ||| ||||| ||||||||||||||||||||| ||||| | ||||||||    
T  5412459 gatttgtttcttcttctaggaattggaacagtttcccaagggcaaacaatactgcagtttctgccatttaactcttagctcatatt 5412374  T

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Target: chr3; HSP #10
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 28 - 204
Target Start/End: Complemental strand, 2758867 - 2758691
Alignment:
Q  28 tctgcttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaaatctctgtgtacacttctca 127  Q
    ||||||||||| || |||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||| | |||||| ||||||||| ||| |    
T  2758867 tctgcttcatctgctgcccttctatctgcatctttgaggaagatttgaatgctttcaagttcatctttgatgtctaagaaatctttgtgtacacctctta 2758768  T
Q  128 gaagatttgtttcttcttttaggaactggaacacttcccccaggacaaacgatactgcagtttctgccatttcactc 204  Q
    |||||||||||| | | || || |  ||||||||||| |||| | |  |   |||||||||||||||||||||||||    
T  2758767 gaagatttgtttttaccttaagaagttggaacacttctcccaaggctgatattactgcagtttctgccatttcactc 2758691  T

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Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 32 - 102
Target Start/End: Complemental strand, 3200596 - 3200526
Alignment:
Q  32 cttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtct 102  Q
    ||||||| |||||| || |||||||||| |||||  | |||||||||||||||||||||| ||||||||||    
T  3200596 cttcatcagcagcctttgtgtctgcatccttgagtgaaacttgaatgctctcaagttcatatttgatgtct 3200526  T

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Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 32 - 102
Target Start/End: Original strand, 3357852 - 3357922
Alignment:
Q  32 cttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtct 102  Q
    ||||||| ||||||||| |||||||||| |||||  ||| ||| ||| |||||||||||||||||||||||    
T  3357852 cttcatcagcagcccttgtgtctgcatccttgagtgagaattggatgatctcaagttcatctttgatgtct 3357922  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 3311128 - 3311179
Alignment:
Q  50 tgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtc 101  Q
    |||| ||||| ||||||||| |||| ||||||||||| ||||||||||||||    
T  3311128 tgtcagcatccttgaggaaggcttggatgctctcaaggtcatctttgatgtc 3311179  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 3322727 - 3322778
Alignment:
Q  50 tgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtc 101  Q
    |||| ||||| ||||||||| |||| ||||||||||| ||||||||||||||    
T  3322727 tgtcagcatccttgaggaaggcttggatgctctcaaggtcatctttgatgtc 3322778  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 95
Target Start/End: Complemental strand, 22104335 - 22104280
Alignment:
Q  40 gcagcccttctgtctgcatctttgaggaagacttgaatgctctcaagttcatcttt 95  Q
    ||||| ||||| || ||||||||||||||| |||| ||||| ||||||||||||||    
T  22104335 gcagctcttctatcagcatctttgaggaaggcttggatgctttcaagttcatcttt 22104280  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 3304440 - 3304497
Alignment:
Q  41 cagcccttctgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgat 98  Q
    ||||| ||||||| ||||| |||||||||  ||| ||||||||||| |||||||||||    
T  3304440 cagcctttctgtcagcatccttgaggaaggattggatgctctcaagatcatctttgat 3304497  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 116
Target Start/End: Original strand, 22621774 - 22621850
Alignment:
Q  40 gcagcccttctgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaaatctctgtg 116  Q
    ||||| ||||| || ||||| || |||||| |||| ||||| |||||||||||||| ||||||| ||| ||| ||||    
T  22621774 gcagctcttctatcagcatccttaaggaaggcttggatgctttcaagttcatctttaatgtctgcaaattctttgtg 22621850  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 30990147 - 30990199
Alignment:
Q  55 gcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaa 107  Q
    |||||||| || ||| |||||||||| |||||||||||||| || ||||||||    
T  30990147 gcatctttaagaaaggcttgaatgctttcaagttcatctttaatatctgaaaa 30990199  T

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Target: scaffold0691 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 22 - 198
Target Start/End: Original strand, 6631 - 6807
Alignment:
Q  22 ttagtgtctgcttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaaatctctgtgtacac 121  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||| |||||||||    
T  6631 ttagtgtctgcttcatctgcagcctttctgtctgcatctttgaggaagatttgaatgctttcaagttcatctttgatgtctgtaaaatctgtgtgtacac 6730  T
Q  122 ttctcagaagatttgtttcttcttttaggaactggaacacttcccccaggacaaacgatactgcagtttctgccatt 198  Q
     |||||||||||||||||||| ||||||||| ||||||| ||| || ||| ||||| ||||||||||||||||||||    
T  6731 ctctcagaagatttgtttctttttttaggaattggaacaattctccgagggcaaacaatactgcagtttctgccatt 6807  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 121
Target Start/End: Complemental strand, 34975137 - 34975042
Alignment:
Q  26 tgtctgcttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtctgaaaaatctctgtgtacac 121  Q
    ||||| ||||| | ||||| ||||| || | ||||||||||||| |||||||||| || ||||||| ||| ||||||| ||| ||| |||| ||||    
T  34975137 tgtctccttcagctgcagctcttctatcagaatctttgaggaaggcttgaatgctttcgagttcatatttaatgtctgcaaattctttgtgaacac 34975042  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 98
Target Start/End: Original strand, 41947701 - 41947767
Alignment:
Q  32 cttcatccgcagcccttctgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgat 98  Q
    |||||||  |||||||| |||||||||| ||||| ||| |||  |||||||||||||||| ||||||    
T  41947701 cttcatcaacagcccttgtgtctgcatccttgagaaaggctttgatgctctcaagttcatgtttgat 41947767  T

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