View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16991_low_70 (Length: 233)
Name: NF16991_low_70
Description: NF16991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16991_low_70 |
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Alignment Details
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 8915451 - 8915549
Alignment:
| Q |
18 |
agtacaccatggagaatacaattgtgaggatttattttacgaattcccttgtat---acgagtagacaacaaaagaagagagttgtgcacctacaacag |
113 |
Q |
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| T |
8915451 |
agtacaccatggagaatacaattgtgaggatttattttacgaattcccttgtatacgacgagtagacaacaaaagaagagagttgtgcacctacaacag |
8915549 |
T |
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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 8915606 - 8915660
Alignment:
| Q |
164 |
aagatctaacgattccgataatttatgcaccgtgcaactattgtagaggattcat |
218 |
Q |
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| T |
8915606 |
aagatctaacgattctgacaatttatgcaccgtgcaactattacagaggattcat |
8915660 |
T |
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