View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16991_low_8 (Length: 600)

Name: NF16991_low_8
Description: NF16991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16991_low_8
NF16991_low_8
[»] chr7 (2 HSPs)
chr7 (21-594)||(28266273-28266848)
chr7 (220-256)||(31020716-31020752)
[»] chr6 (4 HSPs)
chr6 (204-269)||(34625716-34625781)
chr6 (222-269)||(34598538-34598585)
chr6 (217-256)||(14244052-14244091)
chr6 (231-263)||(7564182-7564214)
[»] chr4 (3 HSPs)
chr4 (214-269)||(12709995-12710050)
chr4 (222-263)||(32369930-32369971)
chr4 (214-246)||(22440635-22440667)
[»] chr8 (4 HSPs)
chr8 (222-263)||(2517107-2517148)
chr8 (227-270)||(29096951-29096994)
chr8 (223-269)||(1979413-1979459)
chr8 (230-263)||(10170404-10170437)
[»] chr5 (3 HSPs)
chr5 (214-270)||(18542221-18542278)
chr5 (222-277)||(9895147-9895202)
chr5 (232-277)||(28322251-28322296)
[»] chr3 (2 HSPs)
chr3 (219-270)||(49636837-49636888)
chr3 (227-263)||(36301998-36302034)
[»] chr2 (2 HSPs)
chr2 (228-269)||(5461181-5461222)
chr2 (225-262)||(5526792-5526829)
[»] scaffold0027 (1 HSPs)
scaffold0027 (223-255)||(145921-145953)


Alignment Details
Target: chr7 (Bit Score: 549; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 21 - 594
Target Start/End: Original strand, 28266273 - 28266848
Alignment:
Q  21 gatttgcctcaaccatttcaatcatgttttagtttcaggtactatacacttttcttttaatatgtgtgagagatataataggttgctactagatatgctt 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28266273 gatttgcctcaaccatttcaatcatgttttagtttcaggtactatacacttttcttttaatatgtgtgagagatataataggttgctactagatatgctt 28266372  T
Q  121 agcttcctcgaagcttttaacccgtatcatattttacgaagcactgacatgacacatacacggacccttgacacgactttgacacatgacatagatacat 220  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  28266373 agctgcctcgaagcttttaacctgtatcatattttacgaagcactgacatgacacagacatggacccttgacacgactttgacacatgacatagatacat 28266472  T
Q  221 cgacaccggtaataatttgagaaaataaattaattggatgtaaacacatgagttggtaccgatgcgtgtcggacacgggggcacaccta--atatcataa 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  28266473 cgacaccggtaataatttgagaaaataaattaattggatgtaaacacatgagttggtaccgatgcgtgtcggacacgggggcacacctataatatcataa 28266572  T
Q  319 gtgtctgtgcttcagagaccatattagaaaatggtgctcatttagtacgtatctttgtgaaataacataataatttgtgatttttcagtacaatttcaaa 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28266573 gtgtctgtgcttcagagaccatattagaaaatggtgctcatttagtacgtatctttgtgaaataacataataatttgtgatttttcagtacaatttcaaa 28266672  T
Q  419 catctgatagtcatggattagaaaagaatacgcatttaaagtgatctcacaaaggttcttacattagtataatgattaacactatgttgtgtggtataca 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28266673 catctgatagtcatggattagaaaagaatacgcatttaaagtgatctcacaaaggttcttacattagtataatgattaacactatgttgtgtggtataca 28266772  T
Q  519 gatattttaattcacttcagagtgaatgctttcctacctgttaccactctgatgtaaacatggtcatctctgctcc 594  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28266773 gatattttaattcacttcagagtgaatgctttcctacctgttaccactctgatgtaaacatggtcatctctgctcc 28266848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 220 - 256
Target Start/End: Complemental strand, 31020752 - 31020716
Alignment:
Q  220 tcgacaccggtaataatttgagaaaataaattaattg 256  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  31020752 tcgacaccggtaacaatttgagaaaatgaattaattg 31020716  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 204 - 269
Target Start/End: Original strand, 34625716 - 34625781
Alignment:
Q  204 acatgacatagatacatcgacaccggtaataatttgagaaaataaattaattggatgtaaacacat 269  Q
    |||||| || ||||||||||||||| ||||||||||||||||| ||||||||| |||||| |||||    
T  34625716 acatgaaattgatacatcgacaccgataataatttgagaaaatgaattaattgaatgtaatcacat 34625781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 222 - 269
Target Start/End: Original strand, 34598538 - 34598585
Alignment:
Q  222 gacaccggtaataatttgagaaaataaattaattggatgtaaacacat 269  Q
    ||||||| ||||||||||||||||| |||||||||||||||| |||||    
T  34598538 gacaccgataataatttgagaaaatgaattaattggatgtaatcacat 34598585  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 256
Target Start/End: Complemental strand, 14244091 - 14244052
Alignment:
Q  217 acatcgacaccggtaataatttgagaaaataaattaattg 256  Q
    ||||||||||||||| |||||||||||||| |||||||||    
T  14244091 acatcgacaccggtagtaatttgagaaaatgaattaattg 14244052  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 231 - 263
Target Start/End: Complemental strand, 7564214 - 7564182
Alignment:
Q  231 aataatttgagaaaataaattaattggatgtaa 263  Q
    |||||||||||||||||||||||||| ||||||    
T  7564214 aataatttgagaaaataaattaattgaatgtaa 7564182  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 12709995 - 12710050
Alignment:
Q  214 gatacatcgacaccggtaataatttgagaaaataaattaattggatgtaaacacat 269  Q
    ||||| |||| | |||||||||||||||||||||||||||||| | ||||||||||    
T  12709995 gatacgtcgatatcggtaataatttgagaaaataaattaattgaacgtaaacacat 12710050  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 263
Target Start/End: Complemental strand, 32369971 - 32369930
Alignment:
Q  222 gacaccggtaataatttgagaaaataaattaattggatgtaa 263  Q
    ||||||| ||||||||||||||||| ||||||||| ||||||    
T  32369971 gacaccgataataatttgagaaaatgaattaattgaatgtaa 32369930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 22440667 - 22440635
Alignment:
Q  214 gatacatcgacaccggtaataatttgagaaaat 246  Q
    ||||||||||||||| |||||||||||||||||    
T  22440667 gatacatcgacaccgttaataatttgagaaaat 22440635  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 222 - 263
Target Start/End: Original strand, 2517107 - 2517148
Alignment:
Q  222 gacaccggtaataatttgagaaaataaattaattggatgtaa 263  Q
    ||||||||||||||||||||||||| ||||||||| ||||||    
T  2517107 gacaccggtaataatttgagaaaatgaattaattgaatgtaa 2517148  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 270
Target Start/End: Original strand, 29096951 - 29096994
Alignment:
Q  227 cggtaataatttgagaaaataaattaattggatgtaaacacatg 270  Q
    |||||||||||| ||||||||||||||||| |||||| ||||||    
T  29096951 cggtaataatttaagaaaataaattaattgaatgtaatcacatg 29096994  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 223 - 269
Target Start/End: Original strand, 1979413 - 1979459
Alignment:
Q  223 acaccggtaataatttgagaaaataaattaattggatgtaaacacat 269  Q
    |||||||||||||||||||||||| ||||||||  |||||| |||||    
T  1979413 acaccggtaataatttgagaaaattaattaattaaatgtaatcacat 1979459  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 263
Target Start/End: Complemental strand, 10170437 - 10170404
Alignment:
Q  230 taataatttgagaaaataaattaattggatgtaa 263  Q
    ||||||||||||||||||||||||||| ||||||    
T  10170437 taataatttgagaaaataaattaattgaatgtaa 10170404  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 18542278 - 18542221
Alignment:
Q  214 gatacatcgacaccggtaataatttgagaaaata-aattaattggatgtaaacacatg 270  Q
    |||||||||||||| ||||||||||||||||||| || |||||| |||||| ||||||    
T  18542278 gatacatcgacaccagtaataatttgagaaaatacaagtaattgaatgtaatcacatg 18542221  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 277
Target Start/End: Original strand, 9895147 - 9895202
Alignment:
Q  222 gacaccggtaataatttgagaaaataaattaattggatgtaaacacatgagttggt 277  Q
    |||||| |||||||||||||||||||||||| ||| | |||| |||||| ||||||    
T  9895147 gacaccagtaataatttgagaaaataaattatttgaacgtaatcacatgtgttggt 9895202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 28322251 - 28322296
Alignment:
Q  232 ataatttgagaaaataaattaattggatgtaaacacatgagttggt 277  Q
    ||||||||||||||| ||||||||| |||||| |||||| ||||||    
T  28322251 ataatttgagaaaatgaattaattgaatgtaatcacatgtgttggt 28322296  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 270
Target Start/End: Complemental strand, 49636888 - 49636837
Alignment:
Q  219 atcgacaccggtaataatttgagaaaataaattaattggatgtaaacacatg 270  Q
    |||||| | ||||||||||||||||||| ||||||||| |||||| ||||||    
T  49636888 atcgactctggtaataatttgagaaaatgaattaattgaatgtaatcacatg 49636837  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 263
Target Start/End: Original strand, 36301998 - 36302034
Alignment:
Q  227 cggtaataatttgagaaaataaattaattggatgtaa 263  Q
    |||||||||| ||||||||||||||||||| ||||||    
T  36301998 cggtaataatgtgagaaaataaattaattgaatgtaa 36302034  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 5461222 - 5461181
Alignment:
Q  228 ggtaataatttgagaaaataaattaattggatgtaaacacat 269  Q
    ||||||||||||||| ||||||||||||| |||||| |||||    
T  5461222 ggtaataatttgagataataaattaattgaatgtaatcacat 5461181  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 262
Target Start/End: Complemental strand, 5526829 - 5526792
Alignment:
Q  225 accggtaataatttgagaaaataaattaattggatgta 262  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  5526829 accggtaataatttgagaaaataaaataattgtatgta 5526792  T

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Target: scaffold0027 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 223 - 255
Target Start/End: Original strand, 145921 - 145953
Alignment:
Q  223 acaccggtaataatttgagaaaataaattaatt 255  Q
    |||||||||||| ||||||||||||||||||||    
T  145921 acaccggtaatagtttgagaaaataaattaatt 145953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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