View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16991_low_9 (Length: 581)
Name: NF16991_low_9
Description: NF16991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16991_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 447; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 11 - 469
Target Start/End: Original strand, 6409970 - 6410428
Alignment:
| Q |
11 |
agattattctggaagagtataaagcagctgcaaaagctttggataaggggattggggatcctgatgcagtgaaagcatttaacgtgatggactctgacaa |
110 |
Q |
| |
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|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6409970 |
agattagtctggaagagtataaagcagctgcaaaatctttggataaggggattggggatcctgatgcagtgaaagcatttaacgtgatggactctgacaa |
6410069 |
T |
|
| Q |
111 |
agatggcttcatagactttaaagagtttatggaaatgttcaatggagaaaacaataagataaaagaagaggagattaagagtgcttttcaagtatttgat |
210 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6410070 |
agatggcttcatagactttaaagagttcatggaaatgttcaatggagaaaacaataagataaaagaagaggagattaagagtgcttttcaagtatttgat |
6410169 |
T |
|
| Q |
211 |
ataaatggagatgggaaaatcagtgctgaggaattgtctcaaatatttaagaggttaggagagagttgcagccttagtgcttgtaagaaaatggtgaaag |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6410170 |
ataaatggagatgggaaaatcagtgctgaggaattgtctcaaatatttaagaggttaggagagagttgcagccttagtgcttgtaagaaaatggtgaaag |
6410269 |
T |
|
| Q |
311 |
gtgtcgatggtgatggagatggtcttattgatttgaatgagtttacaagaatgatgatgaatggcaagaaatgtgcctaagtcatcatacttttccggtt |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6410270 |
gtgtcgatggtgatggagatggtcttattgatttgaatgagtttacaagaatgatgatgaatggcaagaaatgtgcctaagtcatcatacttttccggtt |
6410369 |
T |
|
| Q |
411 |
tggaggagcataatctggtttaatgtttctcaagtttatgtctatcttaaatatatcta |
469 |
Q |
| |
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| T |
6410370 |
tggaggagcataatctggtttaatgtttctcaagtttatgtctatcttaaatatatcta |
6410428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 11 - 399
Target Start/End: Complemental strand, 6399789 - 6399398
Alignment:
| Q |
11 |
agattattctggaagagtataaagcagctgcaaaagctttggataaggggattg---gggatcctgatgcagtgaaagcatttaacgtgatggactctga |
107 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||| | ||||||||||| |
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| T |
6399789 |
agattagtctggaagagtataaagcagctgcaaaagctttggataaggggattatttgtgacaatgatgcagtgaaagcatttaaagcaatggactctga |
6399690 |
T |
|
| Q |
108 |
caaagatggcttcatagactttaaagagtttatggaaatgttcaatggagaaaacaataagataaaagaagaggagattaagagtgcttttcaagtattt |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| || |||||||||||||||||||||||| |
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| T |
6399689 |
caaagatggcttcatagactttaaagagtttatggaaatgttcaatggagaaggtagtaagataaaagaagaagatattaagagtgcttttcaagtattt |
6399590 |
T |
|
| Q |
208 |
gatataaatggagatgggaaaatcagtgctgaggaattgtctcaaatatttaagaggttaggagagagttgcagccttagtgcttgtaagaaaatggtga |
307 |
Q |
| |
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||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
6399589 |
gatataaatggtgatgggaaaattagtgctgaggaattgtctcaaatatttaagaggttaggagagagttgtagccttagtgcttgtaagaaaatggtga |
6399490 |
T |
|
| Q |
308 |
aaggtgtcgatggtgatggagatggtcttattgatttgaatgagtttacaagaatgatgatgaatggcaagaaatgtgcctaagtcatcata |
399 |
Q |
| |
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|||| || ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
6399489 |
aaggggttgatagtgatggagatggtcttattgatttgaatgagtttacaaggatgatgatgaatggcaagaaatgtgcctaagttatcata |
6399398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 11 - 399
Target Start/End: Original strand, 6412713 - 6413104
Alignment:
| Q |
11 |
agattattctggaagagtataaagcagctgcaaaagctttggataaggggattg---gggatcctgatgcagtgaaagcatttaacgtgatggactctga |
107 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||| | ||||||||||| |
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| T |
6412713 |
agattagtctggaagagtataaagcagctgcaaaagctttggataaggggattatttgtgacaatgatgcagtgaaagcatttaaagcaatggactctga |
6412812 |
T |
|
| Q |
108 |
caaagatggcttcatagactttaaagagtttatggaaatgttcaatggagaaaacaataagataaaagaagaggagattaagagtgcttttcaagtattt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| || |||||||||||||||||||||||| |
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|
| T |
6412813 |
caaagatggcttcatagactttaaagagtttatggaaatgttcaatggagaaggtagtaagataaaagaagaagatattaagagtgcttttcaagtattt |
6412912 |
T |
|
| Q |
208 |
gatataaatggagatgggaaaatcagtgctgaggaattgtctcaaatatttaagaggttaggagagagttgcagccttagtgcttgtaagaaaatggtga |
307 |
Q |
| |
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||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
6412913 |
gatataaatggtgatgggaaaattagtgctgaggaattgtctcaaatatttaagaggttaggagagagttgtagccttagtgcttgtaagaaaatggtga |
6413012 |
T |
|
| Q |
308 |
aaggtgtcgatggtgatggagatggtcttattgatttgaatgagtttacaagaatgatgatgaatggcaagaaatgtgcctaagtcatcata |
399 |
Q |
| |
|
|||| || ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
6413013 |
aaggggttgatagtgatggagatggtcttattgatttgaatgagtttacaaggatgatgatgaatggcaagaaatgtgcctaagttatcata |
6413104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 20 - 159
Target Start/End: Complemental strand, 6405396 - 6405257
Alignment:
| Q |
20 |
tggaagagtataaagcagctgcaaaagctttggataaggggattggggatcctgatgcagtgaaagcatttaacgtgatggactctgacaaagatggctt |
119 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||| | ||||||| |||||||||||| || |
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| T |
6405396 |
tggaagagtataaagcagctgcaaaagctttggataagggggtaggggatactgatgcagtgaaagcatttaaggccatggactatgacaaagatggatt |
6405297 |
T |
|
| Q |
120 |
catagactttaaagagtttatggaaatgttcaatggagaa |
159 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||| |
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| T |
6405296 |
catagactttagagagtttatggaaatgttcaatggagaa |
6405257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 225 - 392
Target Start/End: Complemental strand, 6403072 - 6402920
Alignment:
| Q |
225 |
gaaaatcagtgctgaggaattgtctcaaatatttaagaggttaggagagagttgcagccttagtgcttgtaagaaaatggtgaaaggtgtcgatggtgat |
324 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
6403072 |
gaaaattagtgctgatgaattgtctcaaatatttaagaggttaggagagagttgtagccttagtt---------------tgaaaggtgtcgatggtgat |
6402988 |
T |
|
| Q |
325 |
ggagatggtcttattgatttgaatgagtttacaagaatgatgatgaatggcaagaaatgtgcctaagt |
392 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||| |
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| T |
6402987 |
ggagatggtcttattgatttgaatgagtttacaaggatgatgatgagtggcaagaaatgtgtctaagt |
6402920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 526 - 581
Target Start/End: Original strand, 6410485 - 6410540
Alignment:
| Q |
526 |
gttaaatgcttggtgattttcattctttgatagttactcgtttcttgttttgatac |
581 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6410485 |
gttaaatgcttggtgattttcattctttgatagttactcgtttcttgttttgatac |
6410540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 526 - 581
Target Start/End: Original strand, 6413268 - 6413324
Alignment:
| Q |
526 |
gttaaatgcttggtgattttcattc-tttgatagttactcgtttcttgttttgatac |
581 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||| |
|
|
| T |
6413268 |
gttaaatgcttggtgattttcattcttttgatagttactggtttcatgttttgatac |
6413324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 469
Target Start/End: Original strand, 6413168 - 6413217
Alignment:
| Q |
420 |
ataatctggtttaatgtttctcaagtttatgtctatcttaaatatatcta |
469 |
Q |
| |
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||||| ||||||| |||||||||||||| ||| |||||| |||||||||| |
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|
| T |
6413168 |
ataatatggtttagtgtttctcaagtttttgtttatctttaatatatcta |
6413217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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