View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16992_high_1 (Length: 493)
Name: NF16992_high_1
Description: NF16992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16992_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 1 - 481
Target Start/End: Complemental strand, 33966976 - 33966496
Alignment:
| Q |
1 |
caatacattgtcatacaaaaggaattcgaccgatacgttccgctcgaaacggtttatcaacctacaatacaacaagagcagacttagcagaacaacaatt |
100 |
Q |
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| T |
33966976 |
caatacattgtcatacaaaaggaattcgaccgatacgttctgctcgaaacggtttatcaacctacaatacaacaagagcagacttagcagaacaacaatt |
33966877 |
T |
|
| Q |
101 |
cacgaaatgggtgagttttgttggtggtctcaaacacactgtttacaaggctgcaaaaaataagctatttgcttcttatactttgcacgttgataagaat |
200 |
Q |
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| T |
33966876 |
catgaaatgggtgagttttgttggtggtctcaaacacactgtttacaaggctgcaaaaaataagctatttgcttcttatactttgcacgttgataagaat |
33966777 |
T |
|
| Q |
201 |
ccttcttttggagattttgatacaattcaagatgccattgattctcttccttccatcaatcttgttagagttgtcatcaaggttcatgcaggagtttaca |
300 |
Q |
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| T |
33966776 |
ccttcttttggagattttgatacaattcaaaatgccattgattctcttccttccatcaatcttgttagagttgtcatcaaggttcatgcaggagtttaca |
33966677 |
T |
|
| Q |
301 |
cgtgagtagtactatactttatctcattttcctttgtttgtggtgtgattgtgtccaaagtttttaatttgcggtcacgtcggaattcttgatattgcga |
400 |
Q |
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| T |
33966676 |
cgtgagtagtactatactttatctcattttcctttgtttgtggtgtcattgtgtccaaagtttttaatttgcggtcacgtcggaattcttgatattgcga |
33966577 |
T |
|
| Q |
401 |
aaaattgtgataaaatatgtatgttaaggtaatcaattgattggacttgagtagtagataagcttcgatggaagacatatt |
481 |
Q |
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| T |
33966576 |
aaaattgtgataaaatatgtatgttaaggtaatcaattgattggactcgagtagtagataagcttggatggaagacatatt |
33966496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 88 - 308
Target Start/End: Original strand, 43076689 - 43076909
Alignment:
| Q |
88 |
cagaacaacaattcacgaaatgggtgagttttgttggtggtctcaaacacactgtttacaaggctgcaaaaaataagctatttgcttcttatactttgca |
187 |
Q |
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||||||||||||||| ||||||||||| |||||||||||||||||||| ||||| | | | || ||||||||||| ||| |||||||||||||| | |
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| T |
43076689 |
cagaacaacaattcatgaaatgggtgaaatttgttggtggtctcaaacatactgtctttagaacagccaaaaataagctttttccttcttatactttgaa |
43076788 |
T |
|
| Q |
188 |
cgttgataagaatccttcttttgga-gattttgatacaattcaagatgccattgattctcttccttccatcaatcttgttagagttgtcatcaaggttca |
286 |
Q |
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| T |
43076789 |
cgtttataaacattcaagtaaaggaggattttcat-caattcaagcagccattgattcccttcccttcattaatttagtgagagttgtcattaaggttca |
43076887 |
T |
|
| Q |
287 |
tgcaggagtttacacgtgagta |
308 |
Q |
| |
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|||||| |||||||||| |||| |
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|
| T |
43076888 |
tgcaggggtttacacgtaagta |
43076909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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