View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16992_high_3 (Length: 366)
Name: NF16992_high_3
Description: NF16992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16992_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 22918718 - 22918537
Alignment:
| Q |
1 |
atatatcatcatcaatttgtttaatatttttcccacgaagacacactttatatgagataactataacttattcctaacacctatatattaatgtatt--t |
98 |
Q |
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| T |
22918718 |
atatatcatcatcagtttgtttaatatttttcccatgaagacacactttatatgagataactataacttattcctatcacctatatattaatgtattttt |
22918619 |
T |
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| Q |
99 |
tttataggagataaaaattatgtaacttagtgtggtgaaatatcttgctttacatgtctttttaaacttacactcttaatat |
180 |
Q |
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| T |
22918618 |
tttataggagataaaaattatgtaacttagtgtggtgaaatatcttgctttacatatctttttaaacttacactcttaatat |
22918537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 187 - 326
Target Start/End: Complemental strand, 22918332 - 22918193
Alignment:
| Q |
187 |
attcataacaggttctacatttcttcatgaactcaaaacgttttcaacagaacatacaagcatatcgaattaattaagatgaagccaagtaggaaacgaa |
286 |
Q |
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| T |
22918332 |
attcataacaggttctacatttcttcatgaactcaaaatgttttcaacagaacatacaagcatatcgaattaattaagatgaagccaagtaggaaacgaa |
22918233 |
T |
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| Q |
287 |
aaggtcatgagggaaaagtccactgactgatatcagcaat |
326 |
Q |
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| T |
22918232 |
aagctcatgagggaaaagtccactgactgatatcaacaat |
22918193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 3 - 89
Target Start/End: Complemental strand, 3522852 - 3522766
Alignment:
| Q |
3 |
atatcatcatcaatttgtttaatatttttcccacgaagacacactttatatgagataactataacttattcctaacacctatatatt |
89 |
Q |
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|||||||||||| |||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
3522852 |
atatcatcatcagtttgtttaatatgtttcccatgaagacacactttatataagataactataacttattcctcacacctatatatt |
3522766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 125 - 180
Target Start/End: Complemental strand, 43787533 - 43787478
Alignment:
| Q |
125 |
ttagtgtggtgaaatatcttgctttacatgtctttttaaacttacactcttaatat |
180 |
Q |
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| T |
43787533 |
ttagtgtggtgaaatatcttgctttacatgtctttttaaacttacactcttaatat |
43787478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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