View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16992_high_5 (Length: 255)
Name: NF16992_high_5
Description: NF16992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16992_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 10 - 240
Target Start/End: Complemental strand, 46506836 - 46506604
Alignment:
| Q |
10 |
aaaagaaggcatatatttataaaatagggtgctcaggtgtaggtcaagtagtggagcccatagttttaaagagatggagaaaggttcagggttgagttta |
109 |
Q |
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| T |
46506836 |
aaaagaaggcatatatttataaaatagggtgctcagatgtaggtcaagtagtggagcccatagttttaaagagatggataaaggttcagggttgagttta |
46506737 |
T |
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| Q |
110 |
agagttcttgtaaaacaatcagagtaaaaagctcagagtgctaacctaaagtttcaaga--nnnnnnnnnggtagctacctaaagtttcaagattaacgt |
207 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
46506736 |
agaattcttgtaaaacaatcagagtaaaaagctcagagtgctaacctaaagtttcaagaattttttttttggtagctacctaaagtttcaagattaacgt |
46506637 |
T |
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| Q |
208 |
atggtggttttcatgtgttaactatgttatatc |
240 |
Q |
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|||||||||||||| |||||||||||||||||| |
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| T |
46506636 |
atggtggttttcatatgttaactatgttatatc |
46506604 |
T |
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