View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16992_low_12 (Length: 219)

Name: NF16992_low_12
Description: NF16992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16992_low_12
NF16992_low_12
[»] chr7 (15 HSPs)
chr7 (69-135)||(10315492-10315558)
chr7 (162-208)||(8242367-8242413)
chr7 (162-208)||(13932513-13932559)
chr7 (162-208)||(25942692-25942738)
chr7 (162-208)||(29646884-29646930)
chr7 (162-208)||(45261595-45261641)
chr7 (162-208)||(46510407-46510453)
chr7 (148-205)||(297465-297522)
chr7 (151-208)||(19347714-19347771)
chr7 (164-208)||(10361348-10361392)
chr7 (148-208)||(34080233-34080293)
chr7 (162-208)||(10318697-10318743)
chr7 (162-208)||(11911015-11911061)
chr7 (162-208)||(15976451-15976497)
chr7 (162-208)||(32455703-32455749)
[»] chr8 (23 HSPs)
chr8 (148-208)||(41881659-41881719)
chr8 (148-208)||(13098998-13099058)
chr8 (148-205)||(41427729-41427786)
chr8 (162-208)||(18405044-18405090)
chr8 (162-208)||(26741519-26741565)
chr8 (162-208)||(26909724-26909770)
chr8 (162-208)||(35596189-35596235)
chr8 (162-207)||(27126871-27126916)
chr8 (165-208)||(15871073-15871116)
chr8 (164-207)||(37698301-37698344)
chr8 (162-208)||(38993149-38993195)
chr8 (162-208)||(39585138-39585184)
chr8 (162-208)||(44599174-44599220)
chr8 (164-208)||(26106244-26106288)
chr8 (162-208)||(2612359-2612405)
chr8 (162-208)||(6838015-6838061)
chr8 (162-208)||(41131101-41131147)
chr8 (162-207)||(10730179-10730224)
chr8 (162-205)||(1386838-1386881)
chr8 (162-205)||(38953133-38953176)
chr8 (162-208)||(7990077-7990123)
chr8 (163-208)||(14066989-14067034)
chr8 (166-205)||(30232527-30232566)
[»] chr4 (20 HSPs)
chr4 (148-208)||(54571515-54571575)
chr4 (162-208)||(1763661-1763707)
chr4 (162-208)||(7069606-7069652)
chr4 (162-208)||(7878385-7878431)
chr4 (162-208)||(11509399-11509445)
chr4 (162-208)||(13391391-13391437)
chr4 (162-208)||(18732859-18732905)
chr4 (162-208)||(28185335-28185381)
chr4 (162-208)||(28972789-28972835)
chr4 (162-208)||(34487729-34487775)
chr4 (162-208)||(51549741-51549787)
chr4 (162-207)||(48080814-48080859)
chr4 (162-207)||(49269032-49269077)
chr4 (162-208)||(6377347-6377393)
chr4 (162-208)||(36505319-36505365)
chr4 (162-208)||(55762077-55762123)
chr4 (162-207)||(31846178-31846223)
chr4 (169-208)||(42383986-42384025)
chr4 (162-205)||(13051358-13051401)
chr4 (162-205)||(47462180-47462223)
[»] chr3 (28 HSPs)
chr3 (148-208)||(38733834-38733894)
chr3 (162-208)||(18972048-18972094)
chr3 (162-208)||(24426210-24426256)
chr3 (162-208)||(25630755-25630801)
chr3 (162-208)||(26135348-26135394)
chr3 (162-208)||(28985920-28985966)
chr3 (162-208)||(29170270-29170316)
chr3 (162-208)||(31372747-31372793)
chr3 (162-208)||(33774868-33774914)
chr3 (162-208)||(55140305-55140351)
chr3 (162-207)||(13159100-13159145)
chr3 (162-207)||(28991384-28991429)
chr3 (162-207)||(29323087-29323132)
chr3 (162-207)||(45199872-45199917)
chr3 (151-208)||(45316887-45316944)
chr3 (162-207)||(50462995-50463040)
chr3 (162-205)||(16341365-16341408)
chr3 (162-208)||(40503086-40503132)
chr3 (162-208)||(44906028-44906074)
chr3 (162-208)||(46558738-46558784)
chr3 (165-208)||(9145097-9145140)
chr3 (162-205)||(41202920-41202963)
chr3 (162-197)||(53302780-53302815)
chr3 (162-197)||(53303947-53303982)
chr3 (162-208)||(37136933-37136979)
chr3 (162-208)||(42445941-42445987)
chr3 (162-193)||(45199983-45200014)
chr3 (162-208)||(55010539-55010585)
[»] chr1 (25 HSPs)
chr1 (156-208)||(24672480-24672532)
chr1 (148-208)||(48814416-48814476)
chr1 (162-208)||(4447517-4447563)
chr1 (162-208)||(8222975-8223021)
chr1 (162-208)||(10924041-10924087)
chr1 (162-208)||(26003395-26003441)
chr1 (162-208)||(31198599-31198645)
chr1 (162-208)||(34968091-34968137)
chr1 (162-208)||(36364757-36364803)
chr1 (162-208)||(44745520-44745566)
chr1 (162-207)||(5153937-5153982)
chr1 (162-207)||(26519694-26519739)
chr1 (162-207)||(29579885-29579930)
chr1 (162-207)||(35825653-35825698)
chr1 (164-208)||(21069879-21069923)
chr1 (164-208)||(36368888-36368932)
chr1 (162-206)||(38614171-38614215)
chr1 (162-205)||(13982353-13982396)
chr1 (162-208)||(20270886-20270932)
chr1 (162-208)||(50579110-50579156)
chr1 (162-208)||(1357026-1357072)
chr1 (162-208)||(17874242-17874288)
chr1 (162-205)||(42051288-42051331)
chr1 (161-204)||(6462297-6462340)
chr1 (162-205)||(37573650-37573693)
[»] scaffold0242 (1 HSPs)
scaffold0242 (162-208)||(3941-3987)
[»] chr6 (11 HSPs)
chr6 (162-208)||(6862308-6862354)
chr6 (162-208)||(10321203-10321249)
chr6 (162-208)||(15707517-15707563)
chr6 (162-208)||(21038596-21038642)
chr6 (162-208)||(34676911-34676957)
chr6 (162-207)||(2978835-2978880)
chr6 (162-209)||(3106689-3106736)
chr6 (162-208)||(11546190-11546236)
chr6 (162-208)||(34760602-34760648)
chr6 (169-208)||(32011494-32011533)
chr6 (165-208)||(32508397-32508440)
[»] chr5 (9 HSPs)
chr5 (162-208)||(18405992-18406038)
chr5 (162-208)||(28210614-28210660)
chr5 (162-208)||(35540407-35540453)
chr5 (162-207)||(10371098-10371143)
chr5 (162-208)||(34374879-34374925)
chr5 (162-208)||(18256338-18256384)
chr5 (162-208)||(21836597-21836643)
chr5 (162-205)||(6630974-6631017)
chr5 (162-208)||(23219645-23219691)
[»] chr2 (18 HSPs)
chr2 (162-208)||(4185488-4185534)
chr2 (162-208)||(9650854-9650900)
chr2 (162-208)||(11706365-11706411)
chr2 (162-208)||(25324980-25325026)
chr2 (162-208)||(26827242-26827288)
chr2 (162-208)||(40022062-40022108)
chr2 (148-197)||(12396527-12396576)
chr2 (162-205)||(3237301-3237344)
chr2 (162-208)||(3587466-3587512)
chr2 (162-208)||(4158936-4158982)
chr2 (162-208)||(33906973-33907019)
chr2 (162-208)||(44088209-44088255)
chr2 (162-208)||(44088876-44088922)
chr2 (162-208)||(45116598-45116644)
chr2 (164-208)||(12569252-12569296)
chr2 (162-197)||(32888124-32888159)
chr2 (163-208)||(45517821-45517866)
chr2 (162-205)||(42808249-42808292)
[»] scaffold0002 (1 HSPs)
scaffold0002 (162-207)||(147843-147888)
[»] scaffold0125 (1 HSPs)
scaffold0125 (162-208)||(22348-22394)
[»] scaffold0110 (1 HSPs)
scaffold0110 (162-208)||(49736-49782)
[»] scaffold0024 (1 HSPs)
scaffold0024 (162-208)||(58455-58501)


Alignment Details
Target: chr7 (Bit Score: 63; Significance: 1e-27; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 69 - 135
Target Start/End: Original strand, 10315492 - 10315558
Alignment:
Q  69 agaaacaaatgtgatagaagtgtgtgatgcgaaattatgttaatctgaaaaacatatgtgctccttc 135  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10315492 agaaacaaatgtgatagaagtgtgtgatgcgaaattatgttaatctgaaaaacatatgagctccttc 10315558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 8242367 - 8242413
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  8242367 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 8242413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 13932559 - 13932513
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  13932559 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 13932513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 25942692 - 25942738
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  25942692 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 25942738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 29646884 - 29646930
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  29646884 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 29646930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 45261595 - 45261641
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  45261595 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 45261641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 46510453 - 46510407
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  46510453 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 46510407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 148 - 205
Target Start/End: Complemental strand, 297522 - 297465
Alignment:
Q  148 tgaatgaatttagcttaaagtttataaattattaatttgatttaattgaaagaataat 205  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||    
T  297522 tgaatgaatttatcttaaagtttataaactattaatttgatttaattgaatgaataat 297465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 151 - 208
Target Start/End: Complemental strand, 19347771 - 19347714
Alignment:
Q  151 atgaatttagcttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    ||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||    
T  19347771 atgaatttaacttacaatttataaattattaatttgatttaattgaaagaataatcta 19347714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 10361348 - 10361392
Alignment:
Q  164 aaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  10361348 aaagtttataaattattaatttgatttaattgaaagaataatcta 10361392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 34080233 - 34080293
Alignment:
Q  148 tgaatgaatttagcttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||  |||||||||    
T  34080233 tgaatgagtttatcttaaagtttataaattattaatttgatttaattgaagtaataatcta 34080293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 10318697 - 10318743
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||    
T  10318697 ttaaagtttataaattattaatttgatttaattgaatgaataatcta 10318743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 11911015 - 11911061
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||    
T  11911015 ttaaaatttataaattattaatttgatttaattgaaagaataatcta 11911061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 15976451 - 15976497
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||    
T  15976451 ttaaagtttataaattattaatttgatttaattgaatgaataatcta 15976497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 32455703 - 32455749
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||    
T  32455703 ttaaagtttataaattattaatttgatttaatcgaaagaataatcta 32455749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 41881719 - 41881659
Alignment:
Q  148 tgaatgaatttagcttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  41881719 tgaatgaatttagcttaaagtttataaattattaatttgatttaattgaatgaataatcta 41881659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 13098998 - 13099058
Alignment:
Q  148 tgaatgaatttagcttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  13098998 tgaatgaatttagcttaaagtttataaattattaatttgatttagttgaaggaataatcta 13099058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 148 - 205
Target Start/End: Complemental strand, 41427786 - 41427729
Alignment:
Q  148 tgaatgaatttagcttaaagtttataaattattaatttgatttaattgaaagaataat 205  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  41427786 tgaatgaatttagcttaaagtttataaactattaatttgatttaattgaatgaataat 41427729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 18405044 - 18405090
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  18405044 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 18405090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 26741519 - 26741565
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  26741519 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 26741565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 26909770 - 26909724
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  26909770 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 26909724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 35596235 - 35596189
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  35596235 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 35596189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 27126871 - 27126916
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatct 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  27126871 ttaaagtttataaattattaatttgatttaattgaaagaataatct 27126916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 165 - 208
Target Start/End: Original strand, 15871073 - 15871116
Alignment:
Q  165 aagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  15871073 aagtttataaattattaatttgatttaattgaaagaataatcta 15871116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 164 - 207
Target Start/End: Original strand, 37698301 - 37698344
Alignment:
Q  164 aaagtttataaattattaatttgatttaattgaaagaataatct 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  37698301 aaagtttataaattattaatttgatttaattgaaagaataatct 37698344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 38993195 - 38993149
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||    
T  38993195 ttaaaatttataaattattaatttgatttaattgaaagaataatcta 38993149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 39585138 - 39585184
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  39585138 ttaaagtttataaattattaattcgatttaattgaaagaataatcta 39585184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 44599220 - 44599174
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||    
T  44599220 ttaaaatttataaattattaatttgatttaattgaaagaataatcta 44599174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 26106244 - 26106288
Alignment:
Q  164 aaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  26106244 aaagtttataaattattaatttgatttaattgaaggaataatcta 26106288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 2612405 - 2612359
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||    
T  2612405 ttaaagtttgtaaatttttaatttgatttaattgaaagaataatcta 2612359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 6838015 - 6838061
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||    
T  6838015 ttaaaatttaaaaattattaatttgatttaattgaaagaataatcta 6838061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 41131147 - 41131101
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||    
T  41131147 ttaaattttataaattattaatttgatttaattgaatgaataatcta 41131101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 10730179 - 10730224
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatct 207  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||    
T  10730179 ttaaactttataaatttttaatttgatttaattgaaagaataatct 10730224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 205
Target Start/End: Original strand, 1386838 - 1386881
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataat 205  Q
    |||||||||||||| ||||||||||||||||||||| |||||||    
T  1386838 ttaaagtttataaactattaatttgatttaattgaatgaataat 1386881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 205
Target Start/End: Complemental strand, 38953176 - 38953133
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataat 205  Q
    |||||||||||||| ||||||||||||||||||||| |||||||    
T  38953176 ttaaagtttataaactattaatttgatttaattgaatgaataat 38953133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 7990123 - 7990077
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    ||||| ||| |||||| ||||||||||||||||||||||||||||||    
T  7990123 ttaaattttttaaatttttaatttgatttaattgaaagaataatcta 7990077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 14066989 - 14067034
Alignment:
Q  163 taaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    ||||||||||| ||||||||||||||| ||||||| ||||||||||    
T  14066989 taaagtttatatattattaatttgattcaattgaaggaataatcta 14067034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 205
Target Start/End: Original strand, 30232527 - 30232566
Alignment:
Q  166 agtttataaattattaatttgatttaattgaaagaataat 205  Q
    |||||||||| ||||||||||||||||||||| |||||||    
T  30232527 agtttataaactattaatttgatttaattgaatgaataat 30232566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 54571575 - 54571515
Alignment:
Q  148 tgaatgaatttagcttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  54571575 tgaatgaatttagcttaaagtttataaattattaatttgatttaatcgaatgaataatcta 54571515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 1763707 - 1763661
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  1763707 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 1763661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 7069606 - 7069652
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  7069606 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 7069652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 7878431 - 7878385
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  7878431 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 7878385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 11509399 - 11509445
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  11509399 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 11509445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 13391391 - 13391437
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  13391391 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 13391437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 18732859 - 18732905
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  18732859 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 18732905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 28185335 - 28185381
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  28185335 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 28185381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 28972835 - 28972789
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  28972835 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 28972789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 34487729 - 34487775
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  34487729 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 34487775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 51549741 - 51549787
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  51549741 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 51549787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 48080814 - 48080859
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatct 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  48080814 ttaaagtttataaattattaatttgatttaattgaaagaataatct 48080859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 49269077 - 49269032
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatct 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  49269077 ttaaagtttataaattattaatttgatttaattgaaagaataatct 49269032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 6377347 - 6377393
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  6377347 ttaaagtttataaattattaatttgaattaattgaaagaataatcta 6377393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 36505365 - 36505319
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||    
T  36505365 ttaatgtttataaattattaatttgatttaattgaaagaataatcta 36505319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 55762123 - 55762077
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  55762123 ttaaagtttataaattattaatctgatttaattgaaagaataatcta 55762077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 31846178 - 31846223
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatct 207  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  31846178 ttaaaatttataaattattaatttgatttaattgaaagaataatct 31846223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 169 - 208
Target Start/End: Complemental strand, 42384025 - 42383986
Alignment:
Q  169 ttataaattattaatttgatttaattgaaagaataatcta 208  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  42384025 ttataaattattaatttgatttaattgaaagaataatcta 42383986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 205
Target Start/End: Complemental strand, 13051401 - 13051358
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataat 205  Q
    ||||||||||||||||||||||||||||||| | || |||||||    
T  13051401 ttaaagtttataaattattaatttgatttaactaaaggaataat 13051358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 205
Target Start/End: Original strand, 47462180 - 47462223
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataat 205  Q
    ||||||| |||||| ||||||||||||||||||||| |||||||    
T  47462180 ttaaagtatataaactattaatttgatttaattgaatgaataat 47462223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 3e-19; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 38733894 - 38733834
Alignment:
Q  148 tgaatgaatttagcttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    ||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||    
T  38733894 tgaatgaatttagcttacagttttaaaattattaatttgatttaattgaaagaataatcta 38733834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 18972048 - 18972094
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  18972048 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 18972094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 24426210 - 24426256
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  24426210 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 24426256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 25630801 - 25630755
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  25630801 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 25630755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 26135394 - 26135348
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  26135394 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 26135348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 28985966 - 28985920
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  28985966 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 28985920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 29170316 - 29170270
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  29170316 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 29170270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 31372793 - 31372747
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  31372793 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 31372747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 33774914 - 33774868
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  33774914 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 33774868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 55140305 - 55140351
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  55140305 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 55140351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 13159145 - 13159100
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatct 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  13159145 ttaaagtttataaattattaatttgatttaattgaaagaataatct 13159100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 28991384 - 28991429
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatct 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  28991384 ttaaagtttataaattattaatttgatttaattgaaagaataatct 28991429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 29323132 - 29323087
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatct 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  29323132 ttaaagtttataaattattaatttgatttaattgaaagaataatct 29323087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 45199917 - 45199872
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatct 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  45199917 ttaaagtttataaattattaatttgatttaattgaaagaataatct 45199872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 151 - 208
Target Start/End: Complemental strand, 45316944 - 45316887
Alignment:
Q  151 atgaatttagcttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    ||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||    
T  45316944 atgaatttaacttacagtgtataaattattaatttgatttaattgaaagaataatcta 45316887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 50463040 - 50462995
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatct 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  50463040 ttaaagtttataaattattaatttgatttaattgaaagaataatct 50462995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 162 - 205
Target Start/End: Complemental strand, 16341408 - 16341365
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataat 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  16341408 ttaaagtttataaattattaatttgatttaattgaaagaataat 16341365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 40503132 - 40503086
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  40503132 ttaaagtttataaattagtaatttgatttaattgaaagaataatcta 40503086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 44906074 - 44906028
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||    
T  44906074 ttaaagtttataaattattattttgatttaattgaaagaataatcta 44906028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 46558784 - 46558738
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  46558784 ttaaagtttataaattattaatttaatttaattgaaagaataatcta 46558738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 165 - 208
Target Start/End: Complemental strand, 9145140 - 9145097
Alignment:
Q  165 aagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    ||||||||||||||||||||||||||||| ||||||||||||||    
T  9145140 aagtttataaattattaatttgatttaatcgaaagaataatcta 9145097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 205
Target Start/End: Complemental strand, 41202963 - 41202920
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataat 205  Q
    |||||||||||||| ||||||||||||||||||||| |||||||    
T  41202963 ttaaagtttataaactattaatttgatttaattgaatgaataat 41202920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 197
Target Start/End: Original strand, 53302780 - 53302815
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaa 197  Q
    ||||||||||||||||||||||||||||||||||||    
T  53302780 ttaaagtttataaattattaatttgatttaattgaa 53302815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 197
Target Start/End: Original strand, 53303947 - 53303982
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaa 197  Q
    ||||||||||||||||||||||||||||||||||||    
T  53303947 ttaaagtttataaattattaatttgatttaattgaa 53303982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 37136979 - 37136933
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    ||||||||||||||||||||||||||||||||| ||  |||||||||    
T  37136979 ttaaagtttataaattattaatttgatttaattaaataaataatcta 37136933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 42445941 - 42445987
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||| ||||||||||||||||| ||| ||||||    
T  42445941 ttaaagtttataaattatcaatttgatttaattgaaggaaaaatcta 42445987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 193
Target Start/End: Complemental strand, 45200014 - 45199983
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaat 193  Q
    ||||||||||||||||||||||||||||||||    
T  45200014 ttaaagtttataaattattaatttgatttaat 45199983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 55010585 - 55010539
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    ||||||||||||||||| |||||||| ||||||||| ||| ||||||    
T  55010585 ttaaagtttataaattactaatttgacttaattgaaggaaaaatcta 55010539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 3e-19; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 24672532 - 24672480
Alignment:
Q  156 tttagcttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  24672532 tttagcttaaagtttataaattattaatttgatttaattgaatgaataatcta 24672480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 48814476 - 48814416
Alignment:
Q  148 tgaatgaatttagcttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    ||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||    
T  48814476 tgaatgaatttagcttacagtttgtaagttattaatttgatttaattgaaagaataatcta 48814416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 4447517 - 4447563
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  4447517 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 4447563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 8223021 - 8222975
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  8223021 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 8222975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 10924041 - 10924087
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  10924041 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 10924087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 26003441 - 26003395
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  26003441 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 26003395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 31198645 - 31198599
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  31198645 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 31198599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 34968137 - 34968091
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  34968137 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 34968091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 36364757 - 36364803
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  36364757 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 36364803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 44745566 - 44745520
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  44745566 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 44745520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 5153982 - 5153937
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatct 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  5153982 ttaaagtttataaattattaatttgatttaattgaaagaataatct 5153937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 26519739 - 26519694
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatct 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  26519739 ttaaagtttataaattattaatttgatttaattgaaagaataatct 26519694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 29579885 - 29579930
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatct 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  29579885 ttaaagtttataaattattaatttgatttaattgaaagaataatct 29579930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 35825653 - 35825698
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatct 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  35825653 ttaaagtttataaattattaatttgatttaattgaaagaataatct 35825698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 21069923 - 21069879
Alignment:
Q  164 aaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  21069923 aaagtttataaattattaatttgatttaattgaaagaataatcta 21069879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 36368888 - 36368932
Alignment:
Q  164 aaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  36368888 aaagtttataaattattaatttgatttaattgaaagaataatcta 36368932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 162 - 206
Target Start/End: Complemental strand, 38614215 - 38614171
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatc 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  38614215 ttaaagtttataaattattaatttgatttaattgaaagaataatc 38614171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 162 - 205
Target Start/End: Complemental strand, 13982396 - 13982353
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataat 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  13982396 ttaaagtttataaattattaatttgatttaattgaaagaataat 13982353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 20270932 - 20270886
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||    
T  20270932 ttaaagtttataaattattaatttgatttaattgaatgaataatcta 20270886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 50579156 - 50579110
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  50579156 ttaaagtttacaaattattaatttgatttaattgaaagaataatcta 50579110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 1357026 - 1357072
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||    
T  1357026 ttaaagtttataaattattaatttgatttaattgaaggaaaaatcta 1357072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 17874242 - 17874288
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||    
T  17874242 ttaaagtttataaattattaatttgatttatttgaaggaataatcta 17874288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 205
Target Start/End: Complemental strand, 42051331 - 42051288
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataat 205  Q
    |||||||||||||| ||||||||||||||||||||| |||||||    
T  42051331 ttaaagtttataaactattaatttgatttaattgaatgaataat 42051288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 6462297 - 6462340
Alignment:
Q  161 cttaaagtttataaattattaatttgatttaattgaaagaataa 204  Q
    ||||||||||||||| ||||||||||||| ||||||| ||||||    
T  6462297 cttaaagtttataaagtattaatttgattcaattgaatgaataa 6462340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 205
Target Start/End: Original strand, 37573650 - 37573693
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataat 205  Q
    |||||||||||||| ||||||||||||||| ||||| |||||||    
T  37573650 ttaaagtttataaactattaatttgatttagttgaatgaataat 37573693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 3941 - 3987
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  3941 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 3987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 5e-18; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 6862308 - 6862354
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  6862308 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 6862354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 10321249 - 10321203
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  10321249 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 10321203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 15707517 - 15707563
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  15707517 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 15707563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 21038642 - 21038596
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  21038642 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 21038596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 34676957 - 34676911
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  34676957 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 34676911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 2978835 - 2978880
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatct 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  2978835 ttaaagtttataaattattaatttgatttaattgaaagaataatct 2978880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 162 - 209
Target Start/End: Complemental strand, 3106736 - 3106689
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatctac 209  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||    
T  3106736 ttaaagtttataaattattaatttgatttaattgaatgaataatctac 3106689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 11546190 - 11546236
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||    
T  11546190 ttaaagtttataaattattaatttgatttaattgaaggaataatcta 11546236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 34760602 - 34760648
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||    
T  34760602 ttaaagtttataaattattaatttgatttaattgaaggaataatcta 34760648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 208
Target Start/End: Complemental strand, 32011533 - 32011494
Alignment:
Q  169 ttataaattattaatttgatttaattgaaagaataatcta 208  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  32011533 ttataaattattaatttgatttaattgaaggaataatcta 32011494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 208
Target Start/End: Original strand, 32508397 - 32508440
Alignment:
Q  165 aagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||    
T  32508397 aagtttataaattattattttgatttaattgaatgaataatcta 32508440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 5e-18; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 18405992 - 18406038
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  18405992 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 18406038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 28210660 - 28210614
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  28210660 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 28210614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 35540407 - 35540453
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  35540407 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 35540453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 10371143 - 10371098
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatct 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  10371143 ttaaagtttataaattattaatttgatttaattgaaagaataatct 10371098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 34374879 - 34374925
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||    
T  34374879 ttaaagtttataaattataaatttgatttaattgaaagaataatcta 34374925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 18256384 - 18256338
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||||    
T  18256384 ttaaagtttataaattattaatttgatttaactgaatgaataatcta 18256338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 21836643 - 21836597
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||||    
T  21836643 ttaaagttaataaattattaatttgatttaattgaatgaataatcta 21836597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 205
Target Start/End: Original strand, 6630974 - 6631017
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataat 205  Q
    |||||||||||||| ||||||||||||||||||||| |||||||    
T  6630974 ttaaagtttataaaatattaatttgatttaattgaatgaataat 6631017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 23219691 - 23219645
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    ||||| ||||||||||||||||||||||||||||||  |||||||||    
T  23219691 ttaaattttataaattattaatttgatttaattgaagtaataatcta 23219645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 4185488 - 4185534
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  4185488 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 4185534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 9650900 - 9650854
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  9650900 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 9650854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 11706411 - 11706365
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  11706411 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 11706365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 25325026 - 25324980
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  25325026 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 25324980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 26827288 - 26827242
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  26827288 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 26827242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 40022108 - 40022062
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  40022108 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 40022062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 12396527 - 12396576
Alignment:
Q  148 tgaatgaatttagcttaaagtttataaattattaatttgatttaattgaa 197  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  12396527 tgaatgaatttagcttaaagtttataaactattaatttgatttaattgaa 12396576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 162 - 205
Target Start/End: Complemental strand, 3237344 - 3237301
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataat 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  3237344 ttaaagtttataaattattaatttgatttaattgaaagaataat 3237301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 3587466 - 3587512
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||    
T  3587466 ttaaagtttataaattataaatttgatttaattgaaagaataatcta 3587512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 4158936 - 4158982
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  4158936 ttaaagtttatgaattattaatttgatttaattgaaagaataatcta 4158982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 33907019 - 33906973
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||    
T  33907019 ttaaagtttataaactattaatttgatttaattgaaagaataatcta 33906973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 44088255 - 44088209
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||    
T  44088255 ttaaagtttataaattattaatttgatttaattgaaggaataatcta 44088209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 44088876 - 44088922
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||    
T  44088876 ttaaagtttataaattattaatttgatttaattgaatgaataatcta 44088922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 45116598 - 45116644
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||    
T  45116598 ttaaagtttataaattattaatttgatttaattgaatgaataatcta 45116644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 12569296 - 12569252
Alignment:
Q  164 aaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  12569296 aaagtttataaattattaatttgatttaattgaaataataatcta 12569252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 197
Target Start/End: Original strand, 32888124 - 32888159
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaa 197  Q
    |||||||||||||| |||||||||||||||||||||    
T  32888124 ttaaagtttataaactattaatttgatttaattgaa 32888159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 45517866 - 45517821
Alignment:
Q  163 taaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    ||||||||||||||||||||||||||| ||| ||| ||||| ||||    
T  45517866 taaagtttataaattattaatttgattcaatagaatgaatagtcta 45517821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 205
Target Start/End: Original strand, 42808249 - 42808292
Alignment:
Q  162 ttaaagtttataaa-ttattaatttgatttaattgaaagaataat 205  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||    
T  42808249 ttaaagtttataaatttattaatttgattt-attgaaagaataat 42808292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 147843 - 147888
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatct 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  147843 ttaaagtttataaattattaatttgatttaattgaaagaataatct 147888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 22348 - 22394
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||    
T  22348 ttaaagtttataaattattaatttgatttaattgaatgaataatcta 22394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 49736 - 49782
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||    
T  49736 ttaaaatttataaattattaatttgatttaattgaaagaataatcta 49782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 58455 - 58501
Alignment:
Q  162 ttaaagtttataaattattaatttgatttaattgaaagaataatcta 208  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||    
T  58455 ttaaattttataaattattaatttgatttaattgaaagaataatcta 58501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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