View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16992_low_3 (Length: 501)
Name: NF16992_low_3
Description: NF16992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16992_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 12 - 492
Target Start/End: Original strand, 10561636 - 10562118
Alignment:
| Q |
12 |
agcaaaggtggtagggacagttctatgtattggtggagcggtagttttatcattttatcacgcaaaagtaattgatgtacctgaatcaagggttcattgg |
111 |
Q |
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| T |
10561636 |
agcaaaggtggtagggacagttctatgtattggtggagcggtagttttatcattttatcacgcaaaagtaattgatgtacctgaatcaagggttcattgg |
10561735 |
T |
|
| Q |
112 |
aattatgcagagaaacttgaacatggtcatcttaacttctctgctgcccaatcaacctcgcttctaggccctgtgctcttaattcttaatgctcttgttt |
211 |
Q |
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| T |
10561736 |
agttatgcagagaaacttgaacatggtcatcttaacttctctgctgcccaatcaacctcacttctaggccctgtgctcttaattcttaatgctcttgttt |
10561835 |
T |
|
| Q |
212 |
ggtcactatggtttatcattcaagtaagcatcatatgcatcatgcattatattagtatcatacaacatttagggtttagggttgagctaagggattaaag |
311 |
Q |
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| T |
10561836 |
ggtcactatggtttatcattcaagtaagcatcatatgcatcatgcattatattaatatcatacaacatttagggtttagggctgagctaagggattaaag |
10561935 |
T |
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| Q |
312 |
atctaaggagttaggtttagggttcgaatcttaacgaggaaaatgatccctataaaaatccaaaactaatctcatttcttagttgcaacattttccatta |
411 |
Q |
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| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||| |||||||||||||||| |
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| T |
10561936 |
agttaaggagttaggtttagggttcgaatcttaacgaggaaaacgatccctataaaaatccaaaattaatctcaattcttagtcgcaacattttccatta |
10562035 |
T |
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| Q |
412 |
gcatttttaagaat-aaaaaatgcttacgg-aaattttacaaaaactaaaataggtgatggtaaatattactggacaaaaaat |
492 |
Q |
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| T |
10562036 |
gcatttttaataataaaaaaatgcttatggaaaattttacaaaaactaaaaaagttgatggaaaatattattggactaaaaat |
10562118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 12 - 242
Target Start/End: Original strand, 45936283 - 45936516
Alignment:
| Q |
12 |
agcaaaggtggtagggacagttctatgtattggtggagcggtagttttatcattttatcacgcaaaagtaattgatgtacctgaatcaagggttcattgg |
111 |
Q |
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|||||| ||||||||||||||||||||| ||||||||||| || || |||||||||| || | | ||||||||| | |||| ||||||| |||||||| |
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| T |
45936283 |
agcaaaagtggtagggacagttctatgtgttggtggagcgatacttctatcattttaccatggacaagtaattggtataccagaatcaaaaattcattgg |
45936382 |
T |
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| Q |
112 |
aattatgcagagaaacttgaacatggtcatcttaacttctctgctgcccaatc----aacctcgcttctaggccctgtgctcttaattcttaatgctctt |
207 |
Q |
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| T |
45936383 |
agttatgctgagagaattgaaggagctggtgataactcctctgctgcccaatctaataatgt-gcttctaggccctattctcttaattctcagtgctctt |
45936481 |
T |
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| Q |
208 |
gtttggtcactatggtttatcattcaagtaagcat |
242 |
Q |
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| T |
45936482 |
atttggtcactatggttcatcattcaagtaagcat |
45936516 |
T |
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