View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16992_low_5 (Length: 468)
Name: NF16992_low_5
Description: NF16992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16992_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 10 - 390
Target Start/End: Complemental strand, 33674024 - 33673624
Alignment:
| Q |
10 |
atgaaacgaagaaaagaatcgggaagtgtgggttcgagaaagattccaccggatataggattggaattggggttgaagaaaatgggaagagaatgtgaat |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33674024 |
atgaaacgaagaaaagaatcgggaagtgtgggttcgagaaagattccaccggatataggattggaattggggttgaagaaaatgggaagagaatgtgaat |
33673925 |
T |
|
| Q |
110 |
ggtggttgcaaatgttgctttctagcattgtcgtcattttttgaaagaaaatatctttgatttgatgatttatcggaaatggaaaatgaatagctggttg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | | | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33673924 |
ggtggttgcaaatgttgctttctagcattgtcgtcattgtgtaactgaaaatatctttgatttgatgatttatcggaaatggaaaatgaatagctggttg |
33673825 |
T |
|
| Q |
210 |
ttatgagttctcgtcgactcagaagtgctaaactccatcgatgatgatgaatcactaa--------tgtctgttactttctctctcag--------nnnn |
293 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
33673824 |
---tgaattctcgtcgactcagaagtgctaaactccatcgatgatgatgaatcactaatgactgtttgtctgttactttctctctcagtttttttatagc |
33673728 |
T |
|
| Q |
294 |
nnnagcattatccc----ctattatcagcatcactctaaattcttccctcgtcac---ttttttatccacatttggtcaagtttaatttcaagtcaacca |
386 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
33673727 |
attagcattatcccctatctattatcagcgtcactctaaattcttccctcgtcactttttttttatcgacatttggtcaagtttaatttcgagtcaacca |
33673628 |
T |
|
| Q |
387 |
taaa |
390 |
Q |
| |
|
|||| |
|
|
| T |
33673627 |
taaa |
33673624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 388 - 453
Target Start/End: Complemental strand, 33673593 - 33673526
Alignment:
| Q |
388 |
aaaattgaatgaataaaagttactcctaattttt--attatttgattaataaaatcaaatttgtttct |
453 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
33673593 |
aaaattgaatgaataaaagttactccttgtttttttattatttgattaataaaatcaaatttgtttct |
33673526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University