View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16992_low_8 (Length: 279)

Name: NF16992_low_8
Description: NF16992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16992_low_8
NF16992_low_8
[»] chr6 (9 HSPs)
chr6 (7-271)||(22062904-22063168)
chr6 (15-271)||(19586975-19587222)
chr6 (7-177)||(23519144-23519314)
chr6 (7-161)||(18188962-18189116)
chr6 (7-150)||(17818194-17818337)
chr6 (14-106)||(18852742-18852831)
chr6 (21-68)||(29685293-29685340)
chr6 (24-65)||(24390285-24390326)
chr6 (21-65)||(18977624-18977668)
[»] chr4 (8 HSPs)
chr4 (4-271)||(15349234-15349501)
chr4 (4-271)||(14687162-14687435)
chr4 (7-267)||(42711168-42711434)
chr4 (7-150)||(45240250-45240394)
chr4 (7-160)||(11498006-11498159)
chr4 (7-147)||(18290701-18290841)
chr4 (7-150)||(10629428-10629568)
chr4 (41-150)||(11918125-11918233)
[»] chr3 (10 HSPs)
chr3 (14-271)||(6813419-6813676)
chr3 (4-274)||(12777894-12778170)
chr3 (15-271)||(15024254-15024516)
chr3 (12-150)||(20562027-20562165)
chr3 (12-150)||(20564335-20564473)
chr3 (7-69)||(3246906-3246968)
chr3 (12-150)||(20559719-20559857)
chr3 (7-150)||(13090200-13090340)
chr3 (7-150)||(9362350-9362490)
chr3 (7-106)||(13096435-13096531)
[»] chr1 (3 HSPs)
chr1 (7-271)||(27045424-27045688)
chr1 (57-150)||(22626469-22626562)
chr1 (7-115)||(21785836-21785941)
[»] chr7 (14 HSPs)
chr7 (7-271)||(540152-540416)
chr7 (13-271)||(16327166-16327430)
chr7 (4-271)||(9581453-9581726)
chr7 (4-271)||(9729305-9729578)
chr7 (7-271)||(4311279-4311548)
chr7 (13-271)||(8783488-8783752)
chr7 (108-271)||(14223144-14223313)
chr7 (12-151)||(4462105-4462244)
chr7 (7-150)||(23513747-23513890)
chr7 (7-150)||(13741099-13741242)
chr7 (12-147)||(5395821-5395956)
chr7 (7-147)||(12565684-12565824)
chr7 (7-150)||(10439731-10439874)
chr7 (4-45)||(14223105-14223146)
[»] chr8 (4 HSPs)
chr8 (4-271)||(20000852-20001122)
chr8 (7-150)||(20040462-20040605)
chr8 (7-150)||(17619422-17619562)
chr8 (7-150)||(21855169-21855309)
[»] scaffold0090 (1 HSPs)
scaffold0090 (4-271)||(29312-29585)
[»] scaffold0035 (1 HSPs)
scaffold0035 (1-271)||(51940-52216)
[»] chr5 (7 HSPs)
chr5 (4-271)||(23712097-23712370)
chr5 (7-150)||(20446238-20446381)
chr5 (7-147)||(18487456-18487596)
chr5 (7-150)||(21282303-21282447)
chr5 (7-150)||(23602033-23602173)
chr5 (7-150)||(24939211-24939351)
chr5 (14-144)||(24218516-24218643)
[»] scaffold0485 (1 HSPs)
scaffold0485 (13-271)||(11303-11568)
[»] chr2 (2 HSPs)
chr2 (24-150)||(24501008-24501134)
chr2 (13-151)||(25339505-25339643)
[»] scaffold0222 (1 HSPs)
scaffold0222 (24-147)||(18509-18632)
[»] scaffold0566 (1 HSPs)
scaffold0566 (7-160)||(1275-1428)
[»] scaffold0220 (1 HSPs)
scaffold0220 (42-161)||(11741-11860)
[»] scaffold0026 (1 HSPs)
scaffold0026 (57-161)||(17034-17138)
[»] scaffold0113 (1 HSPs)
scaffold0113 (7-150)||(38026-38166)
[»] scaffold0012 (2 HSPs)
scaffold0012 (7-103)||(12837-12930)
scaffold0012 (7-103)||(8728-8821)
[»] scaffold1184 (1 HSPs)
scaffold1184 (31-65)||(537-571)


Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 7 - 271
Target Start/End: Original strand, 22062904 - 22063168
Alignment:
Q  7 catcttcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaa 106  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  22062904 catcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaa 22063003  T
Q  107 acaattagctctaatgattctccatgcatattggtaattgtgagtagagtcatggtttttaaggaatgacaaagtagtataaaagtttagataatagttc 206  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22063004 acaattagctctaatgattctccatgcatgttggtaattgtgagtagagtcatggtttttaaggaatgacaaagtagtataaaagtttagataatagttc 22063103  T
Q  207 tcatctatcctcttgatcccttgattcacactcaccccaaacatcttagcaataaaagtgatgat 271  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  22063104 tcatctatcctcttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 22063168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 15 - 271
Target Start/End: Original strand, 19586975 - 19587222
Alignment:
Q  15 ccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattag 114  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||               || ||||||||||||||||||||||||||    
T  19586975 ccatcatcttgtacctgtgggttaataccaacataaatcaaattttccaccacctc---------------cagattaggtagaataatcaaacaattag 19587059  T
Q  115 ctctaatgattctccatgcatattggtaattgtgagtagagtcatggtttttaaggaatgacaaagtagt------ataaaagtttagataatagttctc 208  Q
    ||||||| ||||||| |  |||||||||||||| |||||   ||||| || ||||||| |||||||||||      ||| |||| |||||||||||||      
T  19587060 ctctaataattctccgtttatattggtaattgtaagtaggtccatgggttctaaggaaggacaaagtagtgagagtatataagtgtagataatagttcct 19587159  T
Q  209 atctatcctcttgatcccttgattcacactcaccccaaacatcttagcaataaaagtgatgat 271  Q
     ||||||||||||||||||||||||| ||||||||||||| || |||||||||| ||||||||    
T  19587160 ctctatcctcttgatcccttgattcagactcaccccaaacttcctagcaataaaggtgatgat 19587222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 7 - 177
Target Start/End: Original strand, 23519144 - 23519314
Alignment:
Q  7 catcttcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaa 106  Q
    |||| ||||||||||| |||||| |||||||||| ||||||||||||||||||||||||| ||| |||||||| |||||||||| |||||||||||||||    
T  23519144 catcatcaccatcatcatgtacccgtgggttagttccaacataaagcaaattttccaccatctccggattagttatgtccaaataaggtagaataatcaa 23519243  T
Q  107 acaattagctctaatgattctccatgcatattggtaattgtgagtagagtcatggtttttaaggaatgaca 177  Q
    ||||||||| ||| | | | |||   |||||||||| ||||||| || ||||||| || ||||||| ||||    
T  23519244 acaattagccctatttactttccgcacatattggtagttgtgagaagggtcatgggttataaggaaagaca 23519314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 7 - 161
Target Start/End: Original strand, 18188962 - 18189116
Alignment:
Q  7 catcttcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaa 106  Q
    |||| ||||||||||  ||||||||||||||||| |||||||||| ||| ||||| |||||||| ||||||||| | ||| |||||||||||||||||||    
T  18188962 catcatcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtattatccgaattaggtagaataatcaa 18189061  T
Q  107 acaattagctctaatgattctccatgcatattggtaattgtgagtagagtcatgg 161  Q
     ||||||||  || ||| ||||||  |||||||||||||||||| || |||||||    
T  18189062 gcaattagcattattgactctccactcatattggtaattgtgagaagggtcatgg 18189116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 7 - 150
Target Start/End: Complemental strand, 17818337 - 17818194
Alignment:
Q  7 catcttcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaa 106  Q
    |||| ||||||||||  ||||||||||||||||| |||||||||| ||| ||||| |||||||  ||||||||||| ||  |||||||||||||||||||    
T  17818337 catcatcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctaccacctacggattagtaatatctgaattaggtagaataatcaa 17818238  T
Q  107 acaattagctctaatgattctccatgcatattggtaattgtgag 150  Q
      |||||||  || ||| ||||||  ||||||||||||||||||    
T  17818237 gaaattagcattattgactctccactcatattggtaattgtgag 17818194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 18852831 - 18852742
Alignment:
Q  14 accatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaa 106  Q
    |||||||| |||||||||||||||||| |||||||||   |||||||| |||| ||| ||||||||||| ||  |||||||||||||||||||    
T  18852831 accatcattttgtacctgtgggttagtgccaacataa---aaattttctaccatctccggattagtaatatctgaattaggtagaataatcaa 18852742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 29685340 - 29685293
Alignment:
Q  21 tcttgtacctgtgggttagtaccaacataaagcaaattttccaccacc 68  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
T  29685340 tcttgtacctgtgggttagtactaacataaagcaaattttccaccacc 29685293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 24390285 - 24390326
Alignment:
Q  24 tgtacctgtgggttagtaccaacataaagcaaattttccacc 65  Q
    |||||||||  |||||||||| ||||||||||||||||||||    
T  24390285 tgtacctgtttgttagtaccagcataaagcaaattttccacc 24390326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 18977668 - 18977624
Alignment:
Q  21 tcttgtacctgtgggttagtaccaacataaagcaaattttccacc 65  Q
    |||||||| |||  |||||||||| ||||||||||||||||||||    
T  18977668 tcttgtacatgtttgttagtaccagcataaagcaaattttccacc 18977624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 4 - 271
Target Start/End: Original strand, 15349234 - 15349501
Alignment:
Q  4 catcatcttcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataat 103  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  15349234 catcatcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataat 15349333  T
Q  104 caaacaattagctctaatgattctccatgcatattggtaattgtgagtagagtcatggtttttaaggaatgacaaagtagtataaaagtttagataatag 203  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  15349334 caaacaattagctctaatgattctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatag 15349433  T
Q  204 ttctcatctatcctcttgatcccttgattcacactcaccccaaacatcttagcaataaaagtgatgat 271  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  15349434 ttctcatctatcctcttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 15349501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 4 - 271
Target Start/End: Original strand, 14687162 - 14687435
Alignment:
Q  4 catcatcttcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataat 103  Q
    ||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||| |||||    
T  14687162 catcatcatcatcattatcttgtacctgtgggttagtaccaacataaagcaaattttccaccgcctccggattagtaatgtccgaattaggtagcataat 14687261  T
Q  104 caaacaattagctctaatgattctccatgcatattggtaattgtgagtagagtcatggtttttaaggaatgacaaagt------agtataaaagtttaga 197  Q
    |||||||||||||||||| |||||||||  |||||||||||||||||||| ||||||| || ||||||||||||||||      |||||| |||||||||    
T  14687262 caaacaattagctctaataattctccatttatattggtaattgtgagtagggtcatgggttctaaggaatgacaaagtagtgagagtatataagtttaga 14687361  T
Q  198 taatagttctcatctatcctcttgatcccttgattcacactcaccccaaacatcttagcaataaaagtgatgat 271  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14687362 taatagttctcctctatcctcttgatcccttgattcacactcaccccaaacttcttagcaataaaagtgatgat 14687435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 7 - 267
Target Start/End: Original strand, 42711168 - 42711434
Alignment:
Q  7 catcttcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaa 106  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  42711168 catcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaa 42711267  T
Q  107 acaattagctctaatgattctccatgcatattggtaattgtgagtagagtcatggtttttaaggaatgacaaagt------agtataaaagtttagataa 200  Q
    |||||||| |||||| ||||||||| ||||||||||||| ||||||  ||||||| || ||||||| ||||||||      |||||| |||||| |||||    
T  42711268 acaattagttctaataattctccattcatattggtaattatgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttggataa 42711367  T
Q  201 tagttctcatctatcctcttgatcccttgattcacactcaccccaaacatcttagcaataaaagtga 267  Q
    || || ||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||    
T  42711368 taattttcatctatcctcttgatcctttgattcacactcaccctaaacctcttagcaataaaagtga 42711434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 7 - 150
Target Start/End: Original strand, 45240250 - 45240394
Alignment:
Q  7 catcttcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaa 106  Q
    |||| ||||||||||  ||||||||||||||||| |||||||||| ||| ||||| |||||||| ||||||||||| | | |||| ||||||||||||||    
T  45240250 catcatcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatattcgaatttggtagaataatcaa 45240349  T
Q  107 acaa-ttagctctaatgattctccatgcatattggtaattgtgag 150  Q
     ||| |||||  || ||| ||||||  ||||||||||||||||||    
T  45240350 gcaatttagcgttattgactctccactcatattggtaattgtgag 45240394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 160
Target Start/End: Original strand, 11498006 - 11498159
Alignment:
Q  7 catcttcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaa 106  Q
    |||| ||||||||||  ||||||||||||||||| |||||||||| ||| ||||| |||||||| ||||||||||| |   |||||||||||||||||||    
T  11498006 catcatcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatatttgaattaggtagaataatcaa 11498105  T
Q  107 acaattagctctaatgattctccatgcatattggtaattgtgagtagagtcatg 160  Q
     |||||| |   | ||| ||||||  ||||||||||||||| || || ||||||    
T  11498106 gcaattaacataattgactctccactcatattggtaattgttagaagggtcatg 11498159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 147
Target Start/End: Complemental strand, 18290841 - 18290701
Alignment:
Q  7 catcttcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaa 106  Q
    |||| ||||||||||  ||||||||||||||||| |||||||||| ||| ||||| | |||||| ||||||||||| ||  |||||||||||||||||||    
T  18290841 catcatcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctatcacctccggattagtaatatctgaattaggtagaataatcaa 18290742  T
Q  107 acaattagctctaatgattctccatgcatattggtaattgt 147  Q
      |||| ||  || ||| | ||||  |||||||||||||||    
T  18290741 taaatttgcattattgaatttccactcatattggtaattgt 18290701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 150
Target Start/End: Complemental strand, 10629568 - 10629428
Alignment:
Q  7 catcttcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaa 106  Q
    |||| ||||||||||  ||||||||||||||||| ||||||||||   | ||||| ||| |||  ||||||||||| ||  |||||||||||||||||||    
T  10629568 catcatcaccatcattgtgtacctgtgggttagtgccaacataaa---agttttctaccgccttcggattagtaatatctgaattaggtagaataatcaa 10629472  T
Q  107 acaattagctctaatgattctccatgcatattggtaattgtgag 150  Q
      |||||||  || ||| ||||||  |||||||| |||||||||    
T  10629471 gaaattagcattattgactctccactcatattgggaattgtgag 10629428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 41 - 150
Target Start/End: Original strand, 11918125 - 11918233
Alignment:
Q  41 accaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatgattctccatgcatattgg 140  Q
    ||||||||||| ||| |||||||||||||  || ||||| ||||||  ||||||||||||||||||| ||||||| ||| ||| | ||||  ||||||||    
T  11918125 accaacataaaacaatttttccaccaccttcgggttagttatgtccggattaggtagaataatcaaa-aattagccctattgactttccactcatattgg 11918223  T
Q  141 taattgtgag 150  Q
    ||||||||||    
T  11918224 taattgtgag 11918233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 14 - 271
Target Start/End: Complemental strand, 6813676 - 6813419
Alignment:
Q  14 accatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaatta 113  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  6813676 accatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaatta 6813577  T
Q  114 gctctaatgattctccatgcatattggtaattgtgagtagagtcatggtttttaaggaatgacaaagtagtataaaagtttagataatagttctcatcta 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6813576 gctctaatgattctccatgcatattggtaattgtgagtagagtcatggtttttaaggaatgacaaagtagtataaaagtttagataatagttctcatcta 6813477  T
Q  214 tcctcttgatcccttgattcacactcaccccaaacatcttagcaataaaagtgatgat 271  Q
    ||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||    
T  6813476 tcctcttgatcccttgattcatactcacctcaaacttcttagcaataaaagtgatgat 6813419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 4 - 274
Target Start/End: Original strand, 12777894 - 12778170
Alignment:
Q  4 catcatcttcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataat 103  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||    
T  12777894 catcatcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccgaattagtaatgtccgaattaggtagaataat 12777993  T
Q  104 caaacaattagctctaatgattctccatgcatattggtaattgtgagtagagtcatggtttttaaggaatgacaaagt------agtataaaagtttaga 197  Q
    ||||||||||| |||||| ||||||||| ||||||| ||||||||||||| ||||||| || ||||||| ||||||||      |||| | |||||| ||    
T  12777994 caaacaattagttctaataattctccattcatattgataattgtgagtagggtcatgggttctaaggaaggacaaagtagtgagagtaaataagtttgga 12778093  T
Q  198 taatagttctcatctatcctcttgatcccttgattcacactcaccccaaacatcttagcaataaaagtgatgatgtc 274  Q
    ||||| || || |||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||    
T  12778094 taataattttcctctatcctcttgatcccttgattcacactcaccctaaacctcttagcaataaaagggatgatgtc 12778170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 15 - 271
Target Start/End: Complemental strand, 15024516 - 15024254
Alignment:
Q  15 ccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattag 114  Q
    |||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||| |||||||| |||||   ||||||||||||||| ||||||||||    
T  15024516 ccatcatcttgtacatgtggattagtaccaacataatgcaaattttccaccacctccggattagttatgtctggattaggtagaataataaaacaattag 15024417  T
Q  115 ctctaatgattctccatgcatattggtaattgtgagtagagtcatggtttttaaggaatgacaaagt------agtataaaagtttagataatagttctc 208  Q
    ||||| | ||||||||| ||||||||||||||||||||| ||||||| || ||||||| ||||||||      |||||| |||| ||||||||||| | |    
T  15024416 ctctattaattctccattcatattggtaattgtgagtagggtcatgggttctaaggaaggacaaagtagtgagagtatataagtatagataatagtaccc 15024317  T
Q  209 atctatcctcttgatcccttgattcacactcaccccaaacatcttagcaataaaagtgatgat 271  Q
     ||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||    
T  15024316 ctctatcctcttgatcccttgattcacactcaccccaaactttctagcaataaaagtgatgat 15024254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 150
Target Start/End: Complemental strand, 20562165 - 20562027
Alignment:
Q  12 tcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaat 111  Q
    ||||||||||  ||||||||||||||||| |||||| ||| | | ||||| |||||||| | ||||||||| ||  |||||||||||||||||||  |||    
T  20562165 tcaccatcattgtgtacctgtgggttagtgccaacacaaacctagttttctaccacctccgaattagtaatatctgaattaggtagaataatcaagaaat 20562066  T
Q  112 tagctctaatgattctccatgcatattggtaattgtgag 150  Q
    |||   || ||| ||||||  ||||||||||||||||||    
T  20562065 tagtagtattgactctccactcatattggtaattgtgag 20562027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 150
Target Start/End: Complemental strand, 20564473 - 20564335
Alignment:
Q  12 tcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaat 111  Q
    ||||||||||  ||||||||||||||||| |||||| ||| | | ||||| |||||||| | ||||||||| ||  |||||||||||||||||||  |||    
T  20564473 tcaccatcattgtgtacctgtgggttagtgccaacacaaacctagttttctaccacctccgaattagtaatatctgaattaggtagaataatcaagaaat 20564374  T
Q  112 tagctctaatgattctccatgcatattggtaattgtgag 150  Q
    |||   || ||| ||||||  ||||||||||||||||||    
T  20564373 tagtagtattgactctccactcatattggtaattgtgag 20564335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 7 - 69
Target Start/End: Original strand, 3246906 - 3246968
Alignment:
Q  7 catcttcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacct 69  Q
    |||| ||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||    
T  3246906 catcatcaccatcatcttgtacctgtgggttagtacaaaaataaaacaaattttccaccacct 3246968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 12 - 150
Target Start/End: Complemental strand, 20559857 - 20559719
Alignment:
Q  12 tcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaat 111  Q
    ||||||||||  |||| |||||||||||| |||||| ||| | | ||||| |||||||| | ||||||||| ||  |||||||||||||||||||  |||    
T  20559857 tcaccatcattgtgtatctgtgggttagtgccaacacaaacctagttttctaccacctccgaattagtaatatctgaattaggtagaataatcaagaaat 20559758  T
Q  112 tagctctaatgattctccatgcatattggtaattgtgag 150  Q
    |||   || ||| ||||||  ||||||||||||||||||    
T  20559757 tagtagtattgactctccactcatattggtaattgtgag 20559719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 150
Target Start/End: Original strand, 13090200 - 13090340
Alignment:
Q  7 catcttcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaa 106  Q
    |||| ||||||||||  ||||||||||||||||| ||||||||||   | ||||| |||||||  ||||||||||| ||  |||||||||||||||||||    
T  13090200 catcatcaccatcattgtgtacctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaa 13090296  T
Q  107 acaattagctctaatgattctccatgcatattggtaattgtgag 150  Q
      |||||||  || ||| || |||  |||||||| |||||||||    
T  13090297 gaaattagcattattgactcaccactcatattgggaattgtgag 13090340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 7 - 150
Target Start/End: Original strand, 9362350 - 9362490
Alignment:
Q  7 catcttcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaa 106  Q
    |||| ||||||||||  ||||||||||||||||| |||||||||   || ||||| |||||||  ||||||||||| |   |||||||||||||||||||    
T  9362350 catcatcaccatcattgtgtacctgtgggttagtgccaacataa---aagttttctaccaccttcggattagtaatatttgaattaggtagaataatcaa 9362446  T
Q  107 acaattagctctaatgattctccatgcatattggtaattgtgag 150  Q
      |||||||  || ||| ||||||  ||||||||  ||||||||    
T  9362447 gaaattagcattattgactctccactcatattggggattgtgag 9362490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 106
Target Start/End: Complemental strand, 13096531 - 13096435
Alignment:
Q  7 catcttcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaa 106  Q
    |||| ||||||||||  |||||||||||||||||  |||||||||   | ||||| |||||||  ||||||||||| ||  |||||||||||||||||||    
T  13096531 catcatcaccatcattgtgtacctgtgggttagtgtcaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaa 13096435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 7 - 271
Target Start/End: Complemental strand, 27045688 - 27045424
Alignment:
Q  7 catcttcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaa 106  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  27045688 catcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaa 27045589  T
Q  107 acaattagctctaatgattctccatgcatattggtaattgtgagtagagtcatggtttttaaggaatgacaaagtagtataaaagtttagataatagttc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27045588 acaattagctctaatgattctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatagttc 27045489  T
Q  207 tcatctatcctcttgatcccttgattcacactcaccccaaacatcttagcaataaaagtgatgat 271  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  27045488 tcatctatcctcttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 27045424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 57 - 150
Target Start/End: Original strand, 22626469 - 22626562
Alignment:
Q  57 ttttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatgattctccatgcatattggtaattgtgag 150  Q
    ||||| |||||| | ||||||||||| ||| ||||||||||||||||||| ||||||||  || ||| ||||||  ||||||||||||||||||    
T  22626469 ttttctaccaccaccggattagtaatatccgaattaggtagaataatcaagcaattagcattattgactctccactcatattggtaattgtgag 22626562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 115
Target Start/End: Original strand, 21785836 - 21785941
Alignment:
Q  7 catcttcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaa 106  Q
    |||| ||||||| ||  ||||||||||||||||| |||||||||   || ||||| |||||||  ||||||||||| ||  |||||||||||| ||||||    
T  21785836 catcatcaccattattgtgtacctgtgggttagtgccaacataa---aagttttctaccaccttcggattagtaatatctgaattaggtagaaaaatcaa 21785932  T
Q  107 acaattagc 115  Q
      |||||||    
T  21785933 gaaattagc 21785941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 7 - 271
Target Start/End: Original strand, 540152 - 540416
Alignment:
Q  7 catcttcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaa 106  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  540152 catcatcaccatcattttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaa 540251  T
Q  107 acaattagctctaatgattctccatgcatattggtaattgtgagtagagtcatggtttttaaggaatgacaaagtagtataaaagtttagataatagttc 206  Q
    |||||||||| |||||||||||| | ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  540252 acaattagctttaatgattctcctttcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatagttc 540351  T
Q  207 tcatctatcctcttgatcccttgattcacactcaccccaaacatcttagcaataaaagtgatgat 271  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  540352 tcatctatcctcttgatcccttgattcacactcaccccaaacttcttagcaataaaagtgatgat 540416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 271
Target Start/End: Original strand, 16327166 - 16327430
Alignment:
Q  13 caccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaatt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||    
T  16327166 caccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaatagtcaaacaatt 16327265  T
Q  113 agctctaatgattctccatgcatattggtaattgtgagtagagtcatggtttttaaggaatgacaaagt------agtataaaagtttagataatagttc 206  Q
    ||||||||| ||||||||| ||||||||||||||||||||| ||||||| || ||||||| ||||||||      |||||| |||||||||||||||||     
T  16327266 agctctaataattctccattcatattggtaattgtgagtagggtcatgggttataaggaaggacaaagtagtaagagtatataagtttagataatagttt 16327365  T
Q  207 tcatctatcctcttgatcccttgattcacactcaccccaaacatcttagcaataaaagtgatgat 271  Q
    || |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  16327366 tcctctatcctcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 16327430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 4 - 271
Target Start/End: Complemental strand, 9581726 - 9581453
Alignment:
Q  4 catcatcttcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataat 103  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||    
T  9581726 catcatcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccagattagtaatgtccgaattaggtagaataat 9581627  T
Q  104 caaacaattagctctaatgattctccatgcatattggtaattgtgagtagagtcatggtttttaaggaatgacaaagt------agtataaaagtttaga 197  Q
    ||||||||||| |||||| || |||||| ||||||| ||||||||||||  ||||||| || ||||||| ||||||||      |||||| |||||| ||    
T  9581626 caaacaattagttctaataatcctccattcatattgataattgtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttgga 9581527  T
Q  198 taatagttctcatctatcctcttgatcccttgattcacactcaccccaaacatcttagcaataaaagtgatgat 271  Q
    ||||| || ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  9581526 taataattttcatctatcctcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 9581453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 4 - 271
Target Start/End: Complemental strand, 9729578 - 9729305
Alignment:
Q  4 catcatcttcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataat 103  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||    
T  9729578 catcatcatcaccatcatcttgtacctgtggattagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaataat 9729479  T
Q  104 caaacaattagctctaatgattctccatgcatattggtaattgtgagtagagtcatggtttttaaggaatgacaaagt------agtataaaagtttaga 197  Q
    ||||||||||| |||||| || |||||| ||||||| ||||||||||||  ||||||| || ||||||| ||||||||      |||||| |||||| ||    
T  9729478 caaacaattagttctaataatcctccattcatattgataattgtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttgga 9729379  T
Q  198 taatagttctcatctatcctcttgatcccttgattcacactcaccccaaacatcttagcaataaaagtgatgat 271  Q
    ||||| || ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  9729378 taataattttcatctatcctcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 9729305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 7 - 271
Target Start/End: Complemental strand, 4311548 - 4311279
Alignment:
Q  7 catcttcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaa 106  Q
    |||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  4311548 catcatcaccatcatcttgtacatgtgggttagtaccaacgtaaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaa 4311449  T
Q  107 acaattagctctaatgattctccatgcatattggtaattgtgagtagagtcatggtttttaaggaatgacaaagt------agtataaaagtttagataa 200  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||| | ||||| || |||| || ||||||||      |||||| |||| |||||||    
T  4311448 acaattagctctaataattctccattcatattggtaattgtgagtagggccatgggttctaagaaaggacaaagtagtgagagtatataagtctagataa 4311349  T
Q  201 tagttctcatctatcctcttgatcccttgattcacactcaccccaaacatcttagcaataaaagtgatgat 271  Q
    |||||| | ||||||||||||||| |||||||||||||| |||||||| || ||| |||||| ||||||||    
T  4311348 tagttcccctctatcctcttgatctcttgattcacactc-ccccaaacttcctagaaataaaggtgatgat 4311279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 13 - 271
Target Start/End: Original strand, 8783488 - 8783752
Alignment:
Q  13 caccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaatt 112  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||| |||||||||||| ||||    
T  8783488 caccatgatcttgtacatgtgggttagtaccaacataaagcaaattttccaccacctccggattagttatgtccgaattagggagaataatcaaaaaatt 8783587  T
Q  113 agctctaatgattctccatgcatattggtaattgtgagtagagtcatggtttttaaggaatgacaaagt------agtataaaagtttagataatagttc 206  Q
    | || |||| ||||||| | |||||| |||||||||||||| | ||||| || ||||||| | ||||||      |||||| |||| |||||||||||||    
T  8783588 atctgtaataattctcctttcatatttgtaattgtgagtagggccatgggttgtaaggaagggcaaagtagtgagagtatataagtctagataatagttc 8783687  T
Q  207 tcatctatcctcttgatcccttgattcacactcaccccaaacatcttagcaataaaagtgatgat 271  Q
     | ||||||| |||||||| |||||||||||||||||||||| || |||||||||| ||||||||    
T  8783688 ccctctatccccttgatccattgattcacactcaccccaaacttcctagcaataaaggtgatgat 8783752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 108 - 271
Target Start/End: Original strand, 14223144 - 14223313
Alignment:
Q  108 caattagctctaatgattctccatgcatattggtaattgtgagtagagtcatggtttttaaggaatgacaaagtagt------ataaaagtttagataat 201  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| |||||||  |||||||||||||||||||||      ||| |||||||||||||    
T  14223144 caattagctctaatgattctccattcatattggtaattgtgagtagggtcatgggctttaaggaatgacaaagtagtgagagtatataagtttagataat 14223243  T
Q  202 agttctcatctatcctcttgatcccttgattcacactcaccccaaacatcttagcaataaaagtgatgat 271  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14223244 agttctcctctttcctcttgatcccttgattcacactcaccccaaacttcttagcaataaaagtgatgat 14223313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 12 - 151
Target Start/End: Original strand, 4462105 - 4462244
Alignment:
Q  12 tcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaat 111  Q
    ||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||  || ||||| |||  |  |||||||||||||||||||||||    
T  4462105 tcaccatcatcatgtaccagtgggttagtaccaatataaagcaaattttccaccaccttcgggttagttatgaacggattaggtagaataatcaaacaat 4462204  T
Q  112 tagctctaatgattctccatgcatattggtaattgtgagt 151  Q
     ||||||||||||| || |  ||||||||| |||||||||    
T  4462205 gagctctaatgattttctaatcatattggtcattgtgagt 4462244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 150
Target Start/End: Complemental strand, 23513890 - 23513747
Alignment:
Q  7 catcttcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaa 106  Q
    |||| ||||||||||  ||||||||||||||||| ||||||||||  || ||||| |||||||| ||||||||||||||| |||||||||||||||||||    
T  23513890 catcatcaccatcattgtgtacctgtgggttagtgccaacataaacaaagttttctaccacctccggattagtaatgtccgaattaggtagaataatcaa 23513791  T
Q  107 acaattagctctaatgattctccatgcatattggtaattgtgag 150  Q
      |||||||  || ||| ||||||  ||||| ||||||||||||    
T  23513790 gtaattagcattattgactctccactcatataggtaattgtgag 23513747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 150
Target Start/End: Complemental strand, 13741242 - 13741099
Alignment:
Q  7 catcttcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaa 106  Q
    |||| ||||||||||  ||||||||||| ||||| ||||||||||   | ||||| |||||||| | ||||||||||||| |||||||||||||||||||    
T  13741242 catcatcaccatcattgtgtacctgtggattagtgccaacataaacatagttttctaccacctccgaattagtaatgtccgaattaggtagaataatcaa 13741143  T
Q  107 acaattagctctaatgattctccatgcatattggtaattgtgag 150  Q
     |||||| |  || ||| ||||||  ||||||||||||||||||    
T  13741142 gcaattatcattattgactctccactcatattggtaattgtgag 13741099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 147
Target Start/End: Complemental strand, 5395956 - 5395821
Alignment:
Q  12 tcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaat 111  Q
    ||||||||||  ||||||||||||||||| |||||||||| ||| ||||| |||||||| ||||||||||| ||  |||||||||||||||||||  |||    
T  5395956 tcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatatctgaattaggtagaataatcaagaaat 5395857  T
Q  112 tagctctaatgattctccatgcatattggtaattgt 147  Q
    ||||  || |||  |||||  ||| |||||||||||    
T  5395856 tagcattattgacgctccactcattttggtaattgt 5395821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 147
Target Start/End: Complemental strand, 12565824 - 12565684
Alignment:
Q  7 catcttcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaa 106  Q
    |||| ||||||||||  |||||| ||||||||||||||||||||| ||| ||||| |||||||| | ||||||||| ||  ||||||||  |||||||||    
T  12565824 catcatcaccatcattgtgtaccggtgggttagtaccaacataaaccaagttttctaccacctccgaattagtaatatctgaattaggttaaataatcaa 12565725  T
Q  107 acaattagctctaatgattctccatgcatattggtaattgt 147  Q
      |||||||  || ||| ||||||  |||||||||||||||    
T  12565724 gaaattagcattattgactctccactcatattggtaattgt 12565684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 7 - 150
Target Start/End: Original strand, 10439731 - 10439874
Alignment:
Q  7 catcttcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaa 106  Q
    |||| ||||||||||  ||||||||||||||||| |||||||||| ||| ||||| |||||||   | |||||||| ||  |||||||||||||||||||    
T  10439731 catcatcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctaccaccttcagcttagtaatatctgaattaggtagaataatcaa 10439830  T
Q  107 acaattagctctaatgattctccatgcatattggtaattgtgag 150  Q
      ||||| |  || ||| ||||||  ||||||||||||||||||    
T  10439831 gaaattatcattattgactctccactcatattggtaattgtgag 10439874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 14223105 - 14223146
Alignment:
Q  4 catcatcttcaccatcatcttgtacctgtgggttagtaccaa 45  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  14223105 catcatcatcaccatcatcttgtacctgtgggttagtaccaa 14223146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 4 - 271
Target Start/End: Complemental strand, 20001122 - 20000852
Alignment:
Q  4 catcatcttcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataat 103  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||    
T  20001122 catcatcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccagattagtaatgtccgaattaggtagaataat 20001023  T
Q  104 caaacaattagctctaatgattctccatgcatattggtaattgtgagtagagtcatggtttttaaggaatgacaaagt------agtataaaagtttaga 197  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||      ||||||||||||||||    
T  20001022 caaacaattagctctaatgattctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtgagagtataaaagtttaga 20000923  T
Q  198 taatagttctcatctatcctcttgatcccttgattcacactcaccccaaacatcttagcaataaaagtgatgat 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||    
T  20000922 taatagttctcatctatcctcttgatcccttgattcacactcaccccaaa---cttagcaataaaagtgatgat 20000852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 7 - 150
Target Start/End: Original strand, 20040462 - 20040605
Alignment:
Q  7 catcttcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaa 106  Q
    |||| ||||||||||  ||||||||||||||||| |||||||||| | | ||||| |||||||||||||||||||| ||  |||||||||||||||||||    
T  20040462 catcatcaccatcattgtgtacctgtgggttagtgccaacataaacctagttttctaccacctctggattagtaatatctgaattaggtagaataatcaa 20040561  T
Q  107 acaattagctctaatgattctccatgcatattggtaattgtgag 150  Q
      ||||||   || ||| ||||||  ||||||||||||||||||    
T  20040562 gaaattagtagtattgactctccactcatattggtaattgtgag 20040605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 150
Target Start/End: Complemental strand, 17619562 - 17619422
Alignment:
Q  7 catcttcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaa 106  Q
    |||| ||||||||||  ||||||||||||||||| ||||||||||   | ||||| |||||||  ||||||||||| ||  |||||||||||||||||||    
T  17619562 catcatcaccatcattgtgtacctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaa 17619466  T
Q  107 acaattagctctaatgattctccatgcatattggtaattgtgag 150  Q
      |||||||  || ||| ||||||  |||||||| |||||||||    
T  17619465 gaaattagcattattgactctccactcatattggaaattgtgag 17619422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 150
Target Start/End: Original strand, 21855169 - 21855309
Alignment:
Q  7 catcttcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaa 106  Q
    |||| ||||||||||  ||||||||| ||||||| ||||||||||   | ||||| |||||||  ||||||||||| ||  |||||||||||||||||||    
T  21855169 catcatcaccatcattgtgtacctgtaggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaa 21855265  T
Q  107 acaattagctctaatgattctccatgcatattggtaattgtgag 150  Q
      |||||||  || ||| ||||||  ||||||||||||||||||    
T  21855266 gaaattagcattattgactctccactcatattggtaattgtgag 21855309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 4 - 271
Target Start/End: Complemental strand, 29585 - 29312
Alignment:
Q  4 catcatcttcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataat 103  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||    
T  29585 catcatcattaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttctaccacctccggattagtaatgtccgaattaggtagaataat 29486  T
Q  104 caaacaattagctctaatgattctccatgcatattggtaattgtgagtagagtcatggtttttaaggaatgacaaagt------agtataaaagtttaga 197  Q
    || ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||      ||||||||||||||||    
T  29485 catacaattagctctaatgattctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtgagagtataaaagtttaga 29386  T
Q  198 taatagttctcatctatcctcttgatcccttgattcacactcaccccaaacatcttagcaataaaagtgatgat 271  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  29385 taatagttctcatctatcctcttgatcccttgattcatactcaccccaaacttcttagcaataaaagtgatgat 29312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 51940 - 52216
Alignment:
Q  1 catcatcatcttcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaat 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||    
T  51940 catcatcatcatcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggaatagtaatgtccgaattaggtagaat 52039  T
Q  101 aatcaaacaattagctctaatgattctccatgcatattggtaattgtgagtagagtcatggtttttaaggaatgacaaagt------agtataaaagttt 194  Q
    | ||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||| || ||||||| ||||||||      |||||| ||||||    
T  52040 agtcaaacaattagctctaataattctccattcatattggtaattgtgagtagggtcatgggttataaggaaggacaaagtagtaagagtatataagttt 52139  T
Q  195 agataatagttctcatctatcctcttgatcccttgattcacactcaccccaaacatcttagcaataaaagtgatgat 271  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  52140 agataatagttttcctctatcctcttgatcccttgattcacactcaccctaaacctcttagcaataaaagtgatgat 52216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 4 - 271
Target Start/End: Original strand, 23712097 - 23712370
Alignment:
Q  4 catcatcttcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataat 103  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  23712097 catcatcatcaccatcatcttgtacctgtgggttaggaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataat 23712196  T
Q  104 caaacaattagctctaatgattctccatgcatattggtaattgtgagtagagtcatggtttttaaggaatgacaaagt------agtataaaagtttaga 197  Q
    |||| |||||| |||||| || |||||| ||||||||||||||||||||  ||||||| || ||||||| ||||||||      |||||| |||||| ||    
T  23712197 caaaaaattagttctaataatcctccattcatattggtaattgtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttgga 23712296  T
Q  198 taatagttctcatctatcctcttgatcccttgattcacactcaccccaaacatcttagcaataaaagtgatgat 271  Q
    ||||| || ||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||    
T  23712297 taataattttcatctatcctcttgatcccttgattcacactcaccctaaacctcttagcaacaaaagtgatgat 23712370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 7 - 150
Target Start/End: Original strand, 20446238 - 20446381
Alignment:
Q  7 catcttcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaa 106  Q
    |||| ||||||||||  ||||||||||||||||| |||||||||| ||| ||||| |||||||  ||||||||||| ||  |||||||||||||||||||    
T  20446238 catcatcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctaccaccttcggattagtaatatctgaattaggtagaataatcaa 20446337  T
Q  107 acaattagctctaatgattctccatgcatattggtaattgtgag 150  Q
      |||||||  || ||| ||||||  ||||||||||||||||||    
T  20446338 gaaattagcattattgactctccactcatattggtaattgtgag 20446381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 7 - 147
Target Start/End: Original strand, 18487456 - 18487596
Alignment:
Q  7 catcttcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaa 106  Q
    |||| ||||||||||  ||||||||||||||||| |||||||||| ||| ||||| |||||||| |||||| |||| ||  |||||||||||||||||||    
T  18487456 catcatcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctaccacctcaggattaataatatctgaattaggtagaataatcaa 18487555  T
Q  107 acaattagctctaatgattctccatgcatattggtaattgt 147  Q
      |||||||  || ||| ||||||  |||||||||||||||    
T  18487556 gaaattagcattattgactctccactcatattggtaattgt 18487596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 7 - 150
Target Start/End: Original strand, 21282303 - 21282447
Alignment:
Q  7 catcttcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaa 106  Q
    |||| ||||||||||  ||||||||||||||||| |||||||||| ||| ||||| |||||||| ||||||||||| | | |||| ||||||||||||||    
T  21282303 catcatcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatattcgaatttggtagaataatcaa 21282402  T
Q  107 acaa-ttagctctaatgattctccatgcatattggtaattgtgag 150  Q
     ||| |||||  || ||| ||||||  ||||||||||||||||||    
T  21282403 gcaatttagcgttattgactctccactcatattggtaattgtgag 21282447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 150
Target Start/End: Original strand, 23602033 - 23602173
Alignment:
Q  7 catcttcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaa 106  Q
    |||| ||||||||||  ||||||||||||||||| ||||||||||   | ||||| |||||||  ||||||||||| ||  |||||||||||||||||||    
T  23602033 catcatcaccatcattgtgtacctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaa 23602129  T
Q  107 acaattagctctaatgattctccatgcatattggtaattgtgag 150  Q
      |||||||  || ||| || |||  |||||||| |||||||||    
T  23602130 gaaattagcattattgactcgccactcatattgggaattgtgag 23602173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 7 - 150
Target Start/End: Complemental strand, 24939351 - 24939211
Alignment:
Q  7 catcttcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaa 106  Q
    |||| ||||||||||  ||||||||||||||||| |||||||||   || ||||| |||||||  | ||||||||| ||  |||||||||||||||||||    
T  24939351 catcatcaccatcattgtgtacctgtgggttagtgccaacataa---aagttttctaccaccttcgaattagtaatatctgaattaggtagaataatcaa 24939255  T
Q  107 acaattagctctaatgattctccatgcatattggtaattgtgag 150  Q
      |||||||  || ||| || |||  |||||||| |||||||||    
T  24939254 gaaattagcattattgactcgccactcatattgggaattgtgag 24939211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 144
Target Start/End: Complemental strand, 24218643 - 24218516
Alignment:
Q  14 accatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaatta 113  Q
    ||||||||  ||||| ||||||||||| |||||||||    | ||||| |||| ||| ||||||||||| ||  |||||||||||||||||||  |||||    
T  24218643 accatcattgtgtacatgtgggttagtgccaacataat---agttttctaccatctccggattagtaatatctgaattaggtagaataatcaagaaatta 24218547  T
Q  114 gctctaatgattctccatgcatattggtaat 144  Q
    ||  || ||| ||||||  ||||||||||||    
T  24218546 gcattattgactctccactcatattggtaat 24218516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0485 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: scaffold0485
Description:

Target: scaffold0485; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 13 - 271
Target Start/End: Original strand, 11303 - 11568
Alignment:
Q  13 caccatcatcttgtacctgtgggttagtaccaacataaagcaaatttt-ccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaat 111  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||| ||||||  |||||||||||||||||||||||    
T  11303 caccatcaccttgtacctgtgggttagtaccaacataaagcaaatttttccaccacctccagattagttatgtccggattaggtagaataatcaaacaat 11402  T
Q  112 tagctctaatgattctccatgcatattggtaattgtgagtagagtcatggtttttaaggaatgacaaagtag------tataaaagtttagataatagtt 205  Q
    |||||||||| ||||||||  ||||||||||||||||||||  ||||||| || ||||||| ||||||||||      |||| |||| ||||||||||||    
T  11403 tagctctaataattctccactcatattggtaattgtgagtatggtcatgggttctaaggaaggacaaagtagtgagattatataagtctagataatagtt 11502  T
Q  206 ctcatctatcctcttgatcccttgattcacactcaccccaaacatcttagcaataaaagtgatgat 271  Q
    | | ||||||||||||||||||||||||||||||||||||||| |  |||||||||| ||||||||    
T  11503 cccctctatcctcttgatcccttgattcacactcaccccaaactttctagcaataaaggtgatgat 11568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 24 - 150
Target Start/End: Complemental strand, 24501134 - 24501008
Alignment:
Q  24 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 123  Q
    ||||||||||||||||| |||||||||| ||| ||||| |||||||| ||||||||||||||| ||||||||||||||||||| ||||||||  || |||    
T  24501134 tgtacctgtgggttagtgccaacataaatcaagttttctaccacctccggattagtaatgtccgaattaggtagaataatcaagcaattagcattattga 24501035  T
Q  124 ttctccatgcatattggtaattgtgag 150  Q
     ||||||   |||||||||||||||||    
T  24501034 ctctccactaatattggtaattgtgag 24501008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 13 - 151
Target Start/End: Original strand, 25339505 - 25339643
Alignment:
Q  13 caccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaatt 112  Q
    |||||||||| ||||| |||| |||||| ||||||||||| |||||||||||||||||  ||||||| ||||||  ||||||||||||||||||||||||    
T  25339505 caccatcatcatgtacatgtgagttagtgccaacataaagaaaattttccaccacctccagattagttatgtccggattaggtagaataatcaaacaatt 25339604  T
Q  113 agctctaatgattctccatgcatattggtaattgtgagt 151  Q
    ||| ||| |||   ||||  |||||||||||||||||||    
T  25339605 agccctattgaccttccactcatattggtaattgtgagt 25339643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 147
Target Start/End: Complemental strand, 18632 - 18509
Alignment:
Q  24 tgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatga 123  Q
    ||||||||||||||||| |||||||||| ||| ||||| |||||||| ||||||||||| ||  |||||||||||||||||||  |||||||  || |||    
T  18632 tgtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatatctgaattaggtagaataatcaagaaattagcattattga 18533  T
Q  124 ttctccatgcatattggtaattgt 147  Q
     ||||||  |||||||||||||||    
T  18532 ctctccactcatattggtaattgt 18509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0566 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0566
Description:

Target: scaffold0566; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 160
Target Start/End: Complemental strand, 1428 - 1275
Alignment:
Q  7 catcttcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaa 106  Q
    |||| ||||||||||  ||||||||||||||||| |||||||||| ||| ||||| ||||||||  |||||||||| ||  |||||||||||||||||||    
T  1428 catcatcaccatcattgtgtacctgtgggttagtgccaacataaaccaagttttctaccacctccagattagtaatatctgaattaggtagaataatcaa 1329  T
Q  107 acaattagctctaatgattctccatgcatattggtaattgtgagtagagtcatg 160  Q
      |||||||   | ||| ||||||  ||||||||||||||| || || ||||||    
T  1328 gaaattagcataattgactctccactcatattggtaattgttagaagggtcatg 1275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 42 - 161
Target Start/End: Original strand, 11741 - 11860
Alignment:
Q  42 ccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatgattctccatgcatattggt 141  Q
    |||||||||| ||| ||||| ||||||||  |||||||||| ||| ||||||||||||||||||| ||||||||  || ||| ||||||  |||||||||    
T  11741 ccaacataaaccaagttttctaccacctccagattagtaatatccgaattaggtagaataatcaagcaattagcattattgactctccactcatattggt 11840  T
Q  142 aattgtgagtagagtcatgg 161  Q
    ||||||||| || |||||||    
T  11841 aattgtgagaagggtcatgg 11860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 57 - 161
Target Start/End: Complemental strand, 17138 - 17034
Alignment:
Q  57 ttttccaccacctctggattagtaatgtccaaattaggtagaataatcaaacaattagctctaatgattctccatgcatattggtaattgtgagtagagt 156  Q
    ||||| |||||||||| ||||||||| ||| ||||||||||||||||||| ||||||||  || ||| ||||||  |||||||||||||||||| || ||    
T  17138 ttttctaccacctctgtattagtaatatccgaattaggtagaataatcaagcaattagcattattgactctccactcatattggtaattgtgagaagggt 17039  T
Q  157 catgg 161  Q
    |||||    
T  17038 catgg 17034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 7 - 150
Target Start/End: Original strand, 38026 - 38166
Alignment:
Q  7 catcttcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataatcaa 106  Q
    |||| ||||||||||  ||||||||||||||||| |||||||||   || ||||| |||||||  | ||||||||| ||  |||||||||||||||||||    
T  38026 catcatcaccatcattgtgtacctgtgggttagtgccaacataa---aagttttctaccaccttagaattagtaatatctgaattaggtagaataatcaa 38122  T
Q  107 acaattagctctaatgattctccatgcatattggtaattgtgag 150  Q
      |||||||  || ||| || |||  |||||||| |||||||||    
T  38123 gaaattagcattattgactcgccactcatattggaaattgtgag 38166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 103
Target Start/End: Original strand, 12837 - 12930
Alignment:
Q  7 catcttcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataat 103  Q
    |||| ||||||||||  ||||||||||||||||| |||||||||   || ||||| ||||||||  |||||||||| || || ||||||||||||||    
T  12837 catcatcaccatcattatgtacctgtgggttagtgccaacataa---aagttttctaccacctccagattagtaatatctaatttaggtagaataat 12930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 103
Target Start/End: Original strand, 8728 - 8821
Alignment:
Q  7 catcttcaccatcatcttgtacctgtgggttagtaccaacataaagcaaattttccaccacctctggattagtaatgtccaaattaggtagaataat 103  Q
    |||| ||||||||||  ||||| ||||||||||| |||||||||   || ||||| ||||||||  |||||||||| || || ||||||||||||||    
T  8728 catcatcaccatcattgtgtacatgtgggttagtgccaacataa---aagttttctaccacctccagattagtaatatctaatttaggtagaataat 8821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1184 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1184
Description:

Target: scaffold1184; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 65
Target Start/End: Original strand, 537 - 571
Alignment:
Q  31 gtgggttagtaccaacataaagcaaattttccacc 65  Q
    |||||||||||||||||||||||||||||||||||    
T  537 gtgggttagtaccaacataaagcaaattttccacc 571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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