View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16993_high_1_N (Length: 548)
Name: NF16993_high_1_N
Description: NF16993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16993_high_1_N |
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Alignment Details
Target: chr2 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 22 - 524
Target Start/End: Complemental strand, 8188413 - 8187909
Alignment:
| Q |
22 |
catcatcatcaaggttttcattttcatgagatgaaagaccgtcacgttctccaccctgtaatacagctgctagaaattttttatactcttcttca-catc |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8188413 |
catcatcatcaaggttttcattttcatgagatgaaagaccgtcacgttctccaccctgtaatacagctgctagaaattttttatactcttcttcatcatc |
8188314 |
T |
|
| Q |
121 |
gacatgatgaacatcatcttcatcatcggtctcttgaagaaaggtctcaagctcatcaagactgaaaccttcaagcgaataacgagctctagtacgcata |
220 |
Q |
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||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8188313 |
gacattttgaacatcatcttcatcatcagtctcttgaagaaaggtctcaagctcatcaagactgaaaccttcaagcgaataacgagctctagtacgcata |
8188214 |
T |
|
| Q |
221 |
-aaatagcatcatcagtatctatgtctatcactgggcttcggggtttcgttgtgttgcttatgtcttctatcctaaaaccatcactagtaccactaatca |
319 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8188213 |
caaatagcatcctcagtatctatgtctatcactgggcttcggggtttcgttgtgttgcttatgtcttctatcctaaaaccatcactagtaccactaatca |
8188114 |
T |
|
| Q |
320 |
agtcattcttcttctccttatcaatctccaattgagatatcatacctgccgcttctaaaacaatttcctcctcgccatgttcagaatctactgcactaca |
419 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8188113 |
agtcattcttcttctccttatcaatctccaattgagatatcatacctgccgcttctaaaacaatttcctcctcgccatgttcagaatctactgcactaca |
8188014 |
T |
|
| Q |
420 |
gatttgctcattatccgttatcttttccaaatctatatccatagatggcccactatctacaacattacgatccaatccatcaccttcagaactcaaactt |
519 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8188013 |
gatttgctcattatccgttatcttttccaaatctatatccatagatggcccactatctacaacattacgatccaatccatcaccttcagaactcaaactt |
8187914 |
T |
|
| Q |
520 |
gatga |
524 |
Q |
| |
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||||| |
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| T |
8187913 |
gatga |
8187909 |
T |
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