View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16993_high_6 (Length: 361)
Name: NF16993_high_6
Description: NF16993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16993_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 3 - 340
Target Start/End: Original strand, 21345806 - 21346142
Alignment:
| Q |
3 |
gatgccgcaatgagatggacatcatcaattccaccacatgaatcataaagtataacagaaaagcagtccatatgcaatcaacttccagcgtattctcggt |
102 |
Q |
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| T |
21345806 |
gatgccgcaatg-gaagggcaccatcaattccaccacatgaatcataaagtataacagaaaagcagtccatatgcaatcaacttccagcgtattctcggt |
21345904 |
T |
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| Q |
103 |
aaaattcttgacgtatcattcatggattttaataaaatggttcatactcgcgttagggcttgtttgtttcttttgtatcaacatgtctccaagggttgag |
202 |
Q |
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| T |
21345905 |
aaaattcttgacgcatcattcatggattttaataaaatggttcatactcgcgttagggcttgtttgtttcttttgtatcaacatgtctccaagggttgag |
21346004 |
T |
|
| Q |
203 |
agcttctctaattgcttgagcttctggagaattctccaaggcgcgcttttctgactccaaaacagttactttgtcatctgcacaatgcaaaaaagtgaaa |
302 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21346005 |
agcttctctaattgcttgagcatctggagaattctccaaggcgcgcttttctgactccaaaacagttactttgtcatctgcacaatgcaaaaaagtgaaa |
21346104 |
T |
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| Q |
303 |
cagattcaaactttctaaacctaaatcctttgatgatg |
340 |
Q |
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| T |
21346105 |
cagattcaaactttctaaacctaaatcctttgatgatg |
21346142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 25 - 340
Target Start/End: Original strand, 22558 - 22872
Alignment:
| Q |
25 |
catcaattccaccacatgaatcataaagtataacagaaaagcagtccatatgcaatcaacttccagcgtattctcggtaaaattcttgacgtatcattca |
124 |
Q |
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| T |
22558 |
catcaattccaccacatgaatcataa-gtataacagaaaagcagtccatatgcaatcaacttccagcgtattctctgtaaaattcttgacgaatcattca |
22656 |
T |
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| Q |
125 |
tggattttaataaaatggttcatactcgcgttagggcttgtttgtttcttttgtatcaacatgtctccaagggttgagagcttctctaattgcttgagct |
224 |
Q |
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| T |
22657 |
tggattttaataaaatggttcatactcgcgtcagggcttgtttgtttcttttgtatcaacatgtctccaagggttgagagcttctctaattgcttgagct |
22756 |
T |
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| Q |
225 |
tctggagaattctccaaggcgcgcttttctgactccaaaacagttactttgtcatctgcacaatgcaaaaaagtgaaacagattcaaactttctaaacct |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22757 |
tctggagaattctccaaggcgcgcttttctgactccaaaacagttactttgtcatctgcacaatgcaaaaaagtgaaacagattcaaactttctaaacct |
22856 |
T |
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| Q |
325 |
aaatcctttgatgatg |
340 |
Q |
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|||||||||||||||| |
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| T |
22857 |
aaatcctttgatgatg |
22872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 29 - 340
Target Start/End: Original strand, 29380906 - 29381216
Alignment:
| Q |
29 |
aattccaccacatgaatcataaagtataacagaaaagcagtccatatgcaatcaacttccagcgtattctcggtaaaattcttgacgtatcattcatgga |
128 |
Q |
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||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
29380906 |
aattccatgacatgaatcataa-gtataacagaaaagcagtccatatgcaatcgacttccagcgtattctcggtaaaattcttgacaaatcattcatgga |
29381004 |
T |
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| Q |
129 |
ttttaataaaatggttcatactcgcgttagggcttgtttgtttcttttgtatcaacatgtctccaagggttgagagcttctctaattgcttgagcttctg |
228 |
Q |
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|||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29381005 |
ttttaataaaatggctcatactcacgtcagggcttgtttgtttcttttgtatcaacatgtctccaagggttgagagcttctctaattgcttgagcttctg |
29381104 |
T |
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| Q |
229 |
gagaattctccaaggcgcgcttttctgactccaaaacagttactttgtcatctgcacaatgcaaaaaagtgaaacagattcaaactttctaaacctaaat |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29381105 |
gagaattctccaaggcgcgcttttctgactccaaaacagttactttatcatctgcacaatgcaaaaaagtgaaacagattcaaactttgtaaacctaaat |
29381204 |
T |
|
| Q |
329 |
cctttgatgatg |
340 |
Q |
| |
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|||||||||||| |
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| T |
29381205 |
cctttgatgatg |
29381216 |
T |
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