View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16993_high_8 (Length: 355)
Name: NF16993_high_8
Description: NF16993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16993_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 15 - 354
Target Start/End: Complemental strand, 55171643 - 55171304
Alignment:
| Q |
15 |
agaaggttcaatgggatccagtcacaggagaaacacgtgctctctcctggttgaagacaagatttgccacaccagagggaagaggtccagttgccatcag |
114 |
Q |
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| T |
55171643 |
agaaggttcaatgggatccagtcacaggagaaacacgtgcactctcctggttgaagacaagatttgccacaccagagggaagaggtccagttgccatcag |
55171544 |
T |
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| Q |
115 |
gatgactggtatgggaaaaggaatgatttgggtgaacggaaaaagcatcggtcgtcactggatgtcattcctctcccctcttggacaacctagtcaaaca |
214 |
Q |
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| T |
55171543 |
gatgactggtatgggaaaaggaatgatttgggtgaacggaaaaagcatcggtcgtcactggatgtcattcctctcccctcttggacaacctagtcaagaa |
55171444 |
T |
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| Q |
215 |
gagtaccacatcccaagagattacctgaatgcaaaggacaatttgcttgttgtattggaagaggagaagggaagtccagaaaaaatagagataatgattg |
314 |
Q |
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| T |
55171443 |
gagtaccacatcccaagagattacctgaatgcaaaggacaatttgcttgttgtattagaagaggagaagggaagtccagaaaaaatagagataatgattg |
55171344 |
T |
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| Q |
315 |
ttgacagagatacaatctgcagttacattacagagaacag |
354 |
Q |
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| T |
55171343 |
ttgacagagatacaatctgcagttacattacagagaacag |
55171304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 101 - 219
Target Start/End: Original strand, 27724266 - 27724384
Alignment:
| Q |
101 |
ccagttgccatcaggatgactggtatgggaaaaggaatgatttgggtgaacggaaaaagcatcggtcgtcactggatgtcattcctctcccctcttggac |
200 |
Q |
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| T |
27724266 |
ccagttgccatcggaatggaaggtatggcaaaaggaatgatttgggttaatggtgaaagcattggtcgtcactggatgagctacctctctcctcttggaa |
27724365 |
T |
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| Q |
201 |
aacctagtcaaacagagta |
219 |
Q |
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| T |
27724366 |
agcctactcaatcagagta |
27724384 |
T |
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