View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16994_high_4 (Length: 466)
Name: NF16994_high_4
Description: NF16994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16994_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 11 - 450
Target Start/End: Original strand, 12634405 - 12634848
Alignment:
| Q |
11 |
caaaggtggggtgagaaggtaaatagttactaactcatatacataagggaaaggcatttaacttttcaatatccgttcgtagacataatcattttgtgca |
110 |
Q |
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| T |
12634405 |
caaaagtggggtgagaaggtaaatggttactaactcatatacataagggaaaggcatttaacttttcaatatccgttcgtagacataatcattttgtgca |
12634504 |
T |
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| Q |
111 |
agaagtcacctaacttaatatattttttaggcactaaaataatgtagaccactcttcttgcttatacttatactagcttgtttacaatgtccttcatcta |
210 |
Q |
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| T |
12634505 |
agaagtcacctaacttaatatattttttaggcactaaaataatgtagaccactcttcttgcttatacttatactagcttgtttacaatgtccttcatcta |
12634604 |
T |
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| Q |
211 |
ataattaccatcgacagttccatatatataaactgtaaagtcagagctttctgtcactctgggctgcatataacaaaattgaacttagaccacattcata |
310 |
Q |
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| T |
12634605 |
ataattaccattgacagttccatatatataaactgtagagtcagagctttctgtcactctgggctgcatataacaaaattgaacttagaccacattcatt |
12634704 |
T |
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| Q |
311 |
tatctcgaaagtaagaattttctttgttgcttgatctt----tataaaaatgcaaaaatatacttgatatgtccggttaagaactgatggaggcaacgat |
406 |
Q |
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| T |
12634705 |
tatcttgaaagtaagaattttctttgtcgcttgatcttcttctataaaaatgcaaaaatatacttgatatgtccggttaagaactgatggaggcaacgat |
12634804 |
T |
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| Q |
407 |
agtgaaaaatgctccagtatgatggtggaacgaaaggtgcatgc |
450 |
Q |
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| T |
12634805 |
agtggaaaatgctccggtatgatggtggaacgaaaggtgcatgc |
12634848 |
T |
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