View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16994_low_12 (Length: 279)
Name: NF16994_low_12
Description: NF16994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16994_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 7e-89; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 36876679 - 36876458
Alignment:
| Q |
1 |
catgttccaacatcgtctctctataccatactgacatatccttcattgctcattcttttccttacctccaacaactggatatcagtttccccaaaacaat |
100 |
Q |
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| T |
36876679 |
catgttccaacattggctctctataccatactgacatatccttcattgctcattcttttcctttcctccaacaactggatatcagtttccccaaaacaat |
36876580 |
T |
|
| Q |
101 |
aaccggtaatggctacgacactgacacttataataatgctcttaaggctcttactcaaaagctttcaaaactccgcaaggttaacctctctggtaatttc |
200 |
Q |
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| T |
36876579 |
aaccggtaatggctacgacactgacacttataataatgctctaaagcttcttactcaaaggctttcaaaacttcgcaaggttaatttctctggtaatttc |
36876480 |
T |
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| Q |
201 |
tatattgatgattcattgtttt |
222 |
Q |
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|| ||| |||| || ||||||| |
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| T |
36876479 |
tacattaatgactcgttgtttt |
36876458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 167 - 261
Target Start/End: Original strand, 36810180 - 36810274
Alignment:
| Q |
167 |
aaaactccgcaaggttaacctctctggtaatttctatattgatgattcattgtttttgggactgtgcaggaactgtgagcttttagaagaggtgg |
261 |
Q |
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| T |
36810180 |
aaaactccacaaggttaacctctctggtaatttctatattgatgattcattgtttttggaactgtgcaggaactgtgagcttttagaagaggtgg |
36810274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 3 - 202
Target Start/End: Complemental strand, 33397591 - 33397401
Alignment:
| Q |
3 |
tgttccaacatcgtctctctataccatactgacatatccttcattgctcattcttttccttacctccaacaactggatatcagtttccccaaaacaataa |
102 |
Q |
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| T |
33397591 |
tgttccaacatcggctctctataccatactgacatatccttcattgccgattccttccctttcctccaacaattggatatcagttaccctaaaataatca |
33397492 |
T |
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| Q |
103 |
ccggtaatggctacgacactgacacttataataatgctcttaaggctcttactcaaaagctttcaaaactccgcaaggttaacctctctggtaatttcta |
202 |
Q |
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| T |
33397491 |
cc---aat------gacagtgacaattataataatgctttgaagcttctcactcaaaagctttcaaaactccgcaaggttaatctctctggtcatttcta |
33397401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 135 - 223
Target Start/End: Original strand, 33093052 - 33093140
Alignment:
| Q |
135 |
aatgctcttaaggctcttactcaaaagctttcaaaactccgcaaggttaacctctctggtaatttctatattgatgattcattgttttt |
223 |
Q |
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| T |
33093052 |
aatgctttaaaggttcttgctcaaaagcttttaaaactccgcaaggttaatctctcaggtaatttctatgttaacgattcatttttttt |
33093140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 27004771 - 27004984
Alignment:
| Q |
1 |
catgttccaacatcgtctctctataccatactgacatatccttcattgctcattcttttccttacctccaacaactggatatcagtttccccaaaacaat |
100 |
Q |
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|||||||||| || | ||||||| ||| ||| |||||||||| || || |||| || || | |||||||||| |||||||||||||||| |||||||| |
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| T |
27004771 |
catgttccaatatggcttctctatgccacactcacatatccttgatcgcagattcattccccttcctccaacaattggatatcagtttccctaaaacaat |
27004870 |
T |
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| Q |
101 |
aaccggtaatggctacgacactgacacttataataatgctcttaaggctcttactcaaaagctttcaaaactccgcaaggttaacctctctggtaatttc |
200 |
Q |
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| T |
27004871 |
atctggtaatg---------ctcatgcttattacaatgctctacagcttcttactcaaaagctttcaaaactccgcaatgttaatctctctggtcattcc |
27004961 |
T |
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| Q |
201 |
tatattgatgattcattgttttt |
223 |
Q |
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|| || |||| || |||||||| |
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| T |
27004962 |
tactttaatgactctttgttttt |
27004984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 37579955 - 37580004
Alignment:
| Q |
135 |
aatgctcttaaggctcttactcaaaagctttcaaaactccgcaaggttaa |
184 |
Q |
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|||||||| |||| ||||||||||||||||||||||||| |||||||||| |
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| T |
37579955 |
aatgctctaaaggttcttactcaaaagctttcaaaactctgcaaggttaa |
37580004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 144 - 223
Target Start/End: Original strand, 18723546 - 18723625
Alignment:
| Q |
144 |
aaggctcttactcaaaagctttcaaaactccgcaaggttaacctctctggtaatttctatattgatgattcattgttttt |
223 |
Q |
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|||| ||||||||||| |||||||||||||||||| ||||| || ||||||||| |||| ||| |||||||||||||||| |
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| T |
18723546 |
aaggttcttactcaaaggctttcaaaactccgcaaagttaatctttctggtaatatctacattaatgattcattgttttt |
18723625 |
T |
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