View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16994_low_14 (Length: 253)

Name: NF16994_low_14
Description: NF16994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16994_low_14
NF16994_low_14
[»] chr3 (12 HSPs)
chr3 (11-253)||(1683454-1683695)
chr3 (122-250)||(35138765-35138893)
chr3 (78-240)||(8166473-8166633)
chr3 (112-240)||(26323123-26323251)
chr3 (125-250)||(20937637-20937762)
chr3 (81-211)||(24635277-24635408)
chr3 (104-209)||(25491009-25491114)
chr3 (104-138)||(25173548-25173582)
chr3 (18-62)||(20937827-20937872)
chr3 (122-245)||(33191817-33191939)
chr3 (113-224)||(30236131-30236242)
chr3 (113-224)||(46860480-46860591)
[»] chr5 (9 HSPs)
chr5 (18-238)||(10700602-10700823)
chr5 (16-250)||(10054766-10055003)
chr5 (125-243)||(316750-316868)
chr5 (99-150)||(5007812-5007863)
chr5 (120-250)||(35616150-35616280)
chr5 (18-156)||(30793211-30793347)
chr5 (112-217)||(32583332-32583437)
chr5 (122-174)||(13695750-13695802)
chr5 (113-224)||(40147267-40147378)
[»] chr4 (12 HSPs)
chr4 (18-210)||(34112838-34113029)
chr4 (16-250)||(38811141-38811376)
chr4 (104-237)||(44570407-44570539)
chr4 (126-250)||(32091459-32091583)
chr4 (78-244)||(21703850-21704018)
chr4 (102-221)||(16422646-16422765)
chr4 (122-239)||(22882810-22882927)
chr4 (122-239)||(22934474-22934591)
chr4 (22-110)||(3786083-3786173)
chr4 (122-250)||(33089859-33089987)
chr4 (113-179)||(12119591-12119657)
chr4 (96-136)||(52065692-52065732)
[»] chr1 (10 HSPs)
chr1 (94-241)||(4535512-4535659)
chr1 (18-250)||(12318476-12318710)
chr1 (36-240)||(22079307-22079514)
chr1 (108-222)||(25652095-25652210)
chr1 (119-245)||(1050500-1050626)
chr1 (117-242)||(16914229-16914355)
chr1 (22-156)||(41135895-41136030)
chr1 (113-245)||(9109470-9109602)
chr1 (18-60)||(2926682-2926725)
chr1 (19-59)||(28242477-28242518)
[»] scaffold0002 (1 HSPs)
scaffold0002 (16-224)||(490269-490482)
[»] chr2 (11 HSPs)
chr2 (16-224)||(42261434-42261647)
chr2 (122-250)||(30218104-30218232)
chr2 (18-224)||(33648177-33648387)
chr2 (20-179)||(24398109-24398275)
chr2 (100-250)||(41454215-41454367)
chr2 (105-233)||(34811264-34811393)
chr2 (18-60)||(30217998-30218040)
chr2 (113-174)||(5723307-5723367)
chr2 (96-149)||(16548683-16548736)
chr2 (119-179)||(4561140-4561200)
chr2 (76-174)||(42019882-42019984)
[»] chr7 (8 HSPs)
chr7 (121-250)||(3904675-3904805)
chr7 (18-179)||(22328343-22328507)
chr7 (105-217)||(43363512-43363628)
chr7 (113-250)||(5116585-5116722)
chr7 (122-211)||(36574575-36574665)
chr7 (201-250)||(1360291-1360340)
chr7 (161-250)||(26639301-26639390)
chr7 (19-59)||(29608909-29608950)
[»] scaffold0053 (1 HSPs)
scaffold0053 (104-217)||(25067-25180)
[»] chr6 (3 HSPs)
chr6 (17-224)||(5043633-5043843)
chr6 (19-59)||(22424780-22424821)
chr6 (113-224)||(2972990-2973101)
[»] chr8 (8 HSPs)
chr8 (122-224)||(1292523-1292625)
chr8 (18-250)||(11137007-11137241)
chr8 (120-250)||(32902231-32902361)
chr8 (201-245)||(7444956-7445000)
chr8 (199-242)||(12632821-12632864)
chr8 (122-224)||(18655406-18655508)
chr8 (126-250)||(3231859-3231984)
chr8 (78-156)||(7597689-7597769)
[»] scaffold0219 (1 HSPs)
scaffold0219 (78-245)||(27456-27626)
[»] scaffold0016 (1 HSPs)
scaffold0016 (113-174)||(114659-114719)


Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 11 - 253
Target Start/End: Complemental strand, 1683695 - 1683454
Alignment:
Q  11 ccaagaaaataaacaagataaagagagtagagaaagagaacaacaccaaatagatgtgtaccagattggtctaacaatgatctactatggggaagagaga 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  1683695 ccaaaaaaataaacaagataaagagagtagagaaagagaacaacaccaaatagatgtgtaccaaatcggtctaacaatgatctactatggggaagagaga 1683596  T
Q  111 gatctccacttcactatcaatgagttctttgcaaagagattcaaaaacgatacaagaaattagcatcaatatcctctcgaagaacgaacttaatttctac 210  Q
      ||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  1683595 tctctccacttcactataaatgagttctttacaaagagatt-aaaaacgatacaagaaattagcatcaataagctctcgaagaacgaacttaatttctac 1683497  T
Q  211 cattttctcaatctatttccatgaacaagagactcgatgactt 253  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  1683496 cattttctcaatctatttccatgaacaagagactcgatgactt 1683454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 122 - 250
Target Start/End: Original strand, 35138765 - 35138893
Alignment:
Q  122 cactatcaatgagttctttgcaaagagattcaaaaacgatacaagaaattagcatcaatatcctctcgaagaacgaacttaatttctaccattttctcaa 221  Q
    ||||||||||||||||||| ||||||||| |||||  | | |||||||||| | |||| |  ||| | |||||| ||| |||||||||||  ||||||||    
T  35138765 cactatcaatgagttctttacaaagagatacaaaagagttgcaagaaattaacttcaacaaactcaccaagaacaaacataatttctacccatttctcaa 35138864  T
Q  222 tctatttccatgaacaagagactcgatga 250  Q
    ||| ||||||||||||||| |||| ||||    
T  35138865 tctctttccatgaacaagacactcaatga 35138893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 78 - 240
Target Start/End: Original strand, 8166473 - 8166633
Alignment:
Q  78 ggtctaacaatgatctactatggggaagagagagatctccacttcactatcaatgagttctttgcaaagagattcaaaaacgatacaagaaattagcatc 177  Q
    ||||||||||||| ||||| |||||| |||||| |||||| ||||||||||||  |||||||| ||||||||| |||||| | || |||| |||| | ||    
T  8166473 ggtctaacaatgacctactttgggga-gagagaaatctccgcttcactatcaacaagttctttacaaagagatacaaaaaggttataagatattaacttc 8166571  T
Q  178 aatatcctctcgaagaacgaacttaatttctaccattttctcaatctatttccatgaacaaga 240  Q
    || |  ||||| |||||| ||| ||||||||||   ||| |||||||  ||||||||||||||    
T  8166572 aacaaactctccaagaacaaacctaatttctactcatttatcaatct-cttccatgaacaaga 8166633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 240
Target Start/End: Original strand, 26323123 - 26323251
Alignment:
Q  112 atctccacttcactatcaatgagttctttgcaaagagattcaaaaacgatacaagaaattagcatcaatatcctctcgaagaacgaacttaatttctacc 211  Q
    ||||||||||||||||||||||||| ||| | |||| || |||||| | |||||||||||||| |||| |  ||||  || ||| ||| |||||| ||||    
T  26323123 atctccacttcactatcaatgagttttttaccaagatatacaaaaaggttacaagaaattagcttcaacaaactcttcaaaaacaaacctaatttttacc 26323222  T
Q  212 attttctcaatctatttccatgaacaaga 240  Q
     ||||||||||||  | ||||||||||||    
T  26323223 cttttctcaatctcatcccatgaacaaga 26323251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 125 - 250
Target Start/End: Complemental strand, 20937762 - 20937637
Alignment:
Q  125 tatcaatgagttctttgcaaagagattcaaaaacgatacaagaaattagcatcaatatcctctcgaagaacgaacttaatttctacc-attttctcaatc 223  Q
    |||||||||||||||| ||||||||| |||||  | |||||||||||| | |||| |  ||||| || ||| ||| ||||||||||| |||||| | |||    
T  20937762 tatcaatgagttcttttcaaagagatacaaaagggttacaagaaattaacttcaacaagctctccaaaaacaaacataatttctacctattttc-cgatc 20937664  T
Q  224 tatttccatgaacaagagactcgatga 250  Q
    | |||| ||||||||||||||| ||||    
T  20937663 tctttctatgaacaagagactcaatga 20937637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 211
Target Start/End: Complemental strand, 24635408 - 24635277
Alignment:
Q  81 ctaacaatgatctacta-tggggaagagagagatctccacttcactatcaatgagttctttgcaaagagattcaaaaacgatacaagaaattagcatcaa 179  Q
    ||||||||||||||| | ||| | ||||||| || || |||||||||||||||| ||  ||  |||||||| |||||  | ||||| |||||||| ||||    
T  24635408 ctaacaatgatctacgactggaggagagagatatatcgacttcactatcaatgaattgattataaagagatacaaaatagttacaaaaaattagcttcaa 24635309  T
Q  180 tatcctctcgaagaacgaacttaatttctacc 211  Q
     |  ||||| |||||| |||||||||||||||    
T  24635308 caaactctccaagaacaaacttaatttctacc 24635277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 209
Target Start/End: Original strand, 25491009 - 25491114
Alignment:
Q  104 agagagagatctccacttcactatcaatgagttctttgcaaagagattcaaaaacgatacaagaaattagcatcaatatcctctcgaagaacgaacttaa 203  Q
    |||||||  ||||||||||||||||||||| |||||| ||||||||| |||||    || ||||||| ||| |||| |  ||||| |||||| ||| |||    
T  25491009 agagagatctctccacttcactatcaatgatttctttacaaagagatacaaaaggagtataagaaatcagcttcaacaagctctcaaagaacaaacctaa 25491108  T
Q  204 tttcta 209  Q
    ||||||    
T  25491109 tttcta 25491114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 138
Target Start/End: Original strand, 25173548 - 25173582
Alignment:
Q  104 agagagagatctccacttcactatcaatgagttct 138  Q
    |||||||||||||||||||||| ||||||||||||    
T  25173548 agagagagatctccacttcactgtcaatgagttct 25173582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 20937872 - 20937827
Alignment:
Q  18 aataaacaagataaagagagtagag-aaagagaacaacaccaaata 62  Q
    ||||||||||||||||||||||||| ||||||||| |||| |||||    
T  20937872 aataaacaagataaagagagtagagaaaagagaaccacacaaaata 20937827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 245
Target Start/End: Complemental strand, 33191939 - 33191817
Alignment:
Q  122 cactatcaatgagttctttgcaaagagattcaaaaacgatacaagaaattagcatcaatatcctctcgaagaacgaa-cttaatttctaccattttctca 220  Q
    ||||||||||||||||||| |||||| ||  ||||  | |||||||| ||||| |||| |  ||||| |||||| || | || ||||||| |||||||||    
T  33191939 cactatcaatgagttctttacaaagacat--aaaatggttacaagaacttagcttcaacaagctctctaagaacaaaacatagtttctactattttctca 33191842  T
Q  221 atctatttccatgaacaagagactc 245  Q
    |||| || |||  ||||||||||||    
T  33191841 atctcttaccaataacaagagactc 33191817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 224
Target Start/End: Complemental strand, 30236242 - 30236131
Alignment:
Q  113 tctccacttcactatcaatgagttctttgcaaagagattcaaaaacgatacaagaaattagcatcaatatcctctcgaagaacgaacttaatttcta-cc 211  Q
    |||||| | |||||||||||||||| || ||||||||| |||| | | |||||||||||||| |||| |  ||| | |||||| | | ||||||||| ||    
T  30236242 tctccaatccactatcaatgagttc-ttacaaagagatacaaataggttacaagaaattagcttcaacaagctcacaaagaacaaccctaatttctaccc 30236144  T
Q  212 attttctcaatct 224  Q
    |||||| ||||||    
T  30236143 attttcccaatct 30236131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 224
Target Start/End: Complemental strand, 46860591 - 46860480
Alignment:
Q  113 tctccacttcactatcaatgagttctttgcaaagagattcaaaaacgatacaagaaattagcatcaatatcctctcgaagaacgaacttaatttcta-cc 211  Q
    |||||| | ||||||||||||||| ||  ||||||||| ||||   | |||||||||||||| |||| |  ||| | |||||| ||| ||||||||| ||    
T  46860591 tctccaatccactatcaatgagttatta-caaagagatacaaatgggttacaagaaattagcttcaacaagctcacaaagaacaaacctaatttctaccc 46860493  T
Q  212 attttctcaatct 224  Q
    |||||||||||||    
T  46860492 attttctcaatct 46860480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 10700602 - 10700823
Alignment:
Q  18 aataaacaagataaagagagtagagaaa-gagaacaacaccaaatagatgtgtac-cagattggtctaacaatgatctactatggggaagagagagatct 115  Q
    ||||| |||||||||||| ||||||||| ||||||||||| ||| |  | | ||| ||| | |||  |||||||| ||||||||||| |||||||  |||    
T  10700602 aataagcaagataaagagcgtagagaaaagagaacaacacgaaagaattatttactcagttcggtgaaacaatgacctactatgggggagagagatctct 10700701  T
Q  116 ccacttcactatcaatgagttctttgcaaagagattcaaaaacgatacaagaaattagcatcaatatcctctcgaagaacgaacttaatttctaccattt 215  Q
    |||||||||||||||||||||||||  |||||||| |||||| | || ||| ||||||| |||| |  ||||| |||||| ||| ||||||||||| |||    
T  10700702 ccacttcactatcaatgagttctttttaaagagatacaaaaatgttataag-aattagcttcaacaagctctctaagaacaaacctaatttctacctttt 10700800  T
Q  216 tctcaatctatttccatgaacaa 238  Q
    |  |||||||||| |||||||||    
T  10700801 ttccaatctattttcatgaacaa 10700823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 10054766 - 10055003
Alignment:
Q  16 aaaataaacaagataaagagagtagagaaagag-aacaacaccaaatagatgtgtacc-agattggtctaacaatgatctactatggggaagaga--gag 111  Q
    ||||||||||||||||| |||||| |||||  | |||||||||||| ||  || |||| || |||||| |||||| | | ||| ||||| ||| |  ||     
T  10054766 aaaataaacaagataaaaagagtacagaaaatggaacaacaccaaagagtcgtttacctagtttggtccaacaattacccactttgggggagatattgat 10054865  T
Q  112 atctccacttcactatcaatgagttctttgcaaagagattcaaaaacgatacaagaaattagcatcaatatcctctcgaagaacgaacttaatttctacc 211  Q
    ||||||| | |||||||||||||||| || ||||||||| |||||  | || ||||||||||| |||| |  ||||  |||||| ||| |||||||||||    
T  10054866 atctccaatacactatcaatgagttcattacaaagagatacaaaag-gttataagaaattagcttcaacaaactcttcaagaacaaacataatttctacc 10054964  T
Q  212 attttctcaatctatttccatgaacaagagactcgatga 250  Q
      ||||||||||| |||| |||||||| |||||| ||||    
T  10054965 catttctcaatctctttctatgaacaatagactcaatga 10055003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 125 - 243
Target Start/End: Complemental strand, 316868 - 316750
Alignment:
Q  125 tatcaatgagttctttgcaaagagattcaaaaacgatacaagaaattagcatcaatatcctctcgaagaacgaacttaatttctaccattttctcaatct 224  Q
    |||||||||||||||| ||||||||| |||||    |||||||||||||| |||| |  ||||| |||||| ||| ||||||||||| ||||||||||||    
T  316868 tatcaatgagttctttacaaagagatacaaaaggattacaagaaattagcttcaacaagctctccaagaacaaacctaatttctacctttttctcaatct 316769  T
Q  225 atttccatgaacaagagac 243  Q
     || || | ||||||||||    
T  316768 tttcccctaaacaagagac 316750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 99 - 150
Target Start/End: Complemental strand, 5007863 - 5007812
Alignment:
Q  99 ggggaagagagagatctccacttcactatcaatgagttctttgcaaagagat 150  Q
    |||| |||||||||||| |||||||||||||||||||||||| |||||||||    
T  5007863 gggggagagagagatcttcacttcactatcaatgagttctttacaaagagat 5007812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 250
Target Start/End: Complemental strand, 35616280 - 35616150
Alignment:
Q  120 ttcactatcaatgagttctttgcaaagagattcaaaaacgatacaagaaattagcatcaatatcctctcgaagaacgaacttaatttctaccattttctc 219  Q
    ||||||||||||||||||||| |||||| || |||||  | |||||||||||| | | ||    ||||| |||||| ||| ||||||||||   ||||||    
T  35616280 ttcactatcaatgagttctttacaaagaaatacaaaagggttacaagaaattaacttaaacgagctctccaagaacaaacctaatttctactcatttctc 35616181  T
Q  220 aatctatttccatgaacaagagactcgatga 250  Q
    ||||| || || |||||||||||||| ||||    
T  35616180 aatctcttcccgtgaacaagagactcaatga 35616150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 30793347 - 30793211
Alignment:
Q  18 aataaacaagataaagagagtagagaaagagaacaacaccaaatagatgtgtaccagatt-ggtctaacaatgatctactatggggaagagagagatctc 116  Q
    |||||||||||||||||||||||||||| | |||| ||||||  | |||| ||||   || |||| ||||||||  |||| | ||| |||||||  ||||    
T  30793347 aataaacaagataaagagagtagagaaaca-aaca-caccaagaa-atgtttaccttgttcggtccaacaatgacttactctaggggagagagatctctc 30793251  T
Q  117 cacttcactatcaatgagttctttgcaaagagattcaaaa 156  Q
    ||||||||||||||| |||||||| ||||||||| |||||    
T  30793250 cacttcactatcaattagttctttacaaagagatacaaaa 30793211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 217
Target Start/End: Original strand, 32583332 - 32583437
Alignment:
Q  112 atctccacttcactatcaatgagttctttgcaaagagattcaaaaacgatacaagaaattagcatcaatatcctctcgaagaacgaacttaatttctacc 211  Q
    |||||| |||||||||||||||||||||| |||| |||| |||||  ||||||   ||||||| |||| | ||| || |||||| | | ||||||||| |    
T  32583332 atctccgcttcactatcaatgagttctttacaaaaagatacaaaagagatacacataattagcttcaacaacctttccaagaacaatcataatttctatc 32583431  T
Q  212 attttc 217  Q
    ||||||    
T  32583432 attttc 32583437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 13695750 - 13695802
Alignment:
Q  122 cactatcaatgagttctttgcaaagagattcaaaaacgatacaagaaattagc 174  Q
    |||||| |||||||||||| ||||||||| |||||  | ||||||||||||||    
T  13695750 cactattaatgagttctttacaaagagatacaaaagggttacaagaaattagc 13695802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 224
Target Start/End: Complemental strand, 40147378 - 40147267
Alignment:
Q  113 tctccacttcactatcaatgagttctttgcaaagagattcaaaaacgatacaagaaattagcatcaatatcctctcgaagaacgaacttaatttcta-cc 211  Q
    |||||| | ||||||||||||||||||  ||||||||| ||||   | |||||||||||||| |||| |  ||| |||||||| | | ||||||||| ||    
T  40147378 tctccaatccactatcaatgagttctta-caaagagatacaaatgagttacaagaaattagcttcaacaagctcacgaagaacaaccctaatttctaccc 40147280  T
Q  212 attttctcaatct 224  Q
    |||||| ||||||    
T  40147279 attttcccaatct 40147267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 34113029 - 34112838
Alignment:
Q  18 aataaacaagataaagagagtagagaaagagaacaacaccaaatagatgtgtaccagatt-ggtctaacaatgatctactatggggaagagagagatctc 116  Q
    |||||||||||||||| ||||||||||| |||  |||||||||||  ||| ||||| ||| |||| |||||||| ||||||| ||| |||||||  ||||    
T  34113029 aataaacaagataaagtgagtagagaaa-agag-aacaccaaataattgtttaccaaattcggtccaacaatgacctactataggggagagagatctctc 34112932  T
Q  117 cacttcactatcaatgagttctttgcaaagagattcaaaaacgatacaagaaattagcatcaatatcctctcgaagaacgaacttaatttctac 210  Q
    |||||||||||||||||||||||| ||||||||| |||||  | |||| ||||||||| |||| |  |||||  ||||| ||| ||||||||||    
T  34112931 cacttcactatcaatgagttctttacaaagagatgcaaaagggttacatgaaattagcttcaacaagctctcctagaacaaacataatttctac 34112838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 38811141 - 38811376
Alignment:
Q  16 aaaataaacaagataaagagagtagag-aaagagaacaacaccaaatagatgtgta-ccagattggtctaacaatgatctactatggggaagagagagat 113  Q
    ||||||||||| ||||||||||||||| ||||||||||||||| || |  ||| || |||| | |||| |||||||| ||||| | ||| |||||||  |    
T  38811141 aaaataaacaatataaagagagtagagaaaagagaacaacaccgaagaattgtttacccagttcggtccaacaatgacctactcttggggagagagatct 38811240  T
Q  114 ctccacttcactatcaatgagttctttgcaaagagattcaaaaacgatacaagaaattagcatcaatatcctctcgaagaacgaacttaatttctaccat 213  Q
    |||| |||||||||||||||||  ||| |||||| || |||||  |  || ||||||||   |||| |  ||||| |||||| |||||||||| ||||      
T  38811241 ctccgcttcactatcaatgagtcatttacaaaga-atacaaaatggtcactagaaattaaattcaacaaactctccaagaacaaacttaatttgtaccca 38811339  T
Q  214 tttctcaatctatttccatgaacaagagactcgatga 250  Q
    ||||||||||| |||| ||||||||||||||| ||||    
T  38811340 tttctcaatctctttctatgaacaagagactcaatga 38811376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 104 - 237
Target Start/End: Original strand, 44570407 - 44570539
Alignment:
Q  104 agagagagatctccacttcactatcaatgagttctttgcaaagagattcaaaaacgatacaagaaattagcatcaatatcctctcgaagaacgaacttaa 203  Q
    ||||||| |||||||| || ||||||||||||||||| ||||||||| |||||| | |||||||||||||  |||| |  ||||| || ||| ||| |||    
T  44570407 agagagatatctccacatctctatcaatgagttctttacaaagagatacaaaaatgttacaagaaattagtttcaacaagctctccaacaacaaacataa 44570506  T
Q  204 tttctaccattttctcaatctatttccatgaaca 237  Q
    ||||||||||||| ||||||| || |||||||||    
T  44570507 tttctaccatttt-tcaatctcttcccatgaaca 44570539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 250
Target Start/End: Complemental strand, 32091583 - 32091459
Alignment:
Q  126 atcaatgagttctttgcaaagagattcaaaaacgatacaagaaattagcatcaatatcctctcgaagaacgaacttaatttctaccattttctcaatcta 225  Q
    ||||||| ||||||| ||||||||| |||||  | |||||||||||||  |||| |  ||||| |||||| ||| ||||||||| ||||||| ||||||     
T  32091583 atcaatgtgttctttacaaagagatacaaaagagttacaagaaattagtttcaacaaactctccaagaacaaacctaatttctagcattttcccaatctt 32091484  T
Q  226 tttccatgaacaagagactcgatga 250  Q
     | ||||||||||||||||| ||||    
T  32091483 ctcccatgaacaagagactcaatga 32091459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 244
Target Start/End: Original strand, 21703850 - 21704018
Alignment:
Q  78 ggtctaacaatgatctactatgggga-agagagagatctccacttcactatcaatgagttctttgcaaagagattcaaaaacgatacaagaaattagcat 176  Q
    |||| |||||||| |||||||||||| |||  || ||||||| | |||| |||||||||||||| |||| |||| |||||| | |||||||||| | | |    
T  21703850 ggtcaaacaatgacctactatggggatagattgatatctccaatccactgtcaatgagttctttacaaaaagatacaaaaagggtacaagaaatcatctt 21703949  T
Q  177 caatatcctctcgaagaac-gaacttaatttctaccattttctcaatctatttccatgaacaagagact 244  Q
    ||| |  || || ||||||  ||| ||||||||||| |||||||||||| || ||| |||||| |||||    
T  21703950 caacaagctttctaagaacaaaacctaatttctacctttttctcaatctcttcccaagaacaatagact 21704018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 102 - 221
Target Start/End: Original strand, 16422646 - 16422765
Alignment:
Q  102 gaagagagagatctccacttcactatcaatgagttctttgcaaagagattcaaaaacgatacaagaaattagcatcaatatcctctcgaagaacgaactt 201  Q
    |||||||||  |||||||||||||||| |||||||| || |||||| || |||||  | | | |||||||||| |||| |  ||||| || ||| ||| |    
T  16422646 gaagagagatctctccacttcactatccatgagttcattacaaagatatacaaaagggtttctagaaattagcttcaaaaagctctcaaaaaacaaacat 16422745  T
Q  202 aatttctaccattttctcaa 221  Q
    ||||||||||||||||||||    
T  16422746 aatttctaccattttctcaa 16422765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 122 - 239
Target Start/End: Original strand, 22882810 - 22882927
Alignment:
Q  122 cactatcaatgagttctttgcaaagagattcaaaaacgatacaagaaattagcatcaatatcctctcgaagaacgaacttaatttcta-ccattttctca 220  Q
    ||||| ||||||||||||| | ||||||| |||||  | |||||||||||||| |||| |  ||||| |||||| ||| |||||| || ||||||| |||    
T  22882810 cactaccaatgagttctttacgaagagatacaaaagggttacaagaaattagcttcaacaaactctccaagaacaaacctaatttttatccatttt-tca 22882908  T
Q  221 atctatttccatgaacaag 239  Q
    |||| ||||||||||||||    
T  22882909 atctctttccatgaacaag 22882927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 122 - 239
Target Start/End: Original strand, 22934474 - 22934591
Alignment:
Q  122 cactatcaatgagttctttgcaaagagattcaaaaacgatacaagaaattagcatcaatatcctctcgaagaacgaacttaatttcta-ccattttctca 220  Q
    ||||| ||||||||||||| | ||||||| |||||  | |||||||||||||| |||| |  ||||| |||||| ||| |||||| || ||||||| |||    
T  22934474 cactaccaatgagttctttacgaagagatacaaaagggttacaagaaattagcttcaacaaactctccaagaacaaacctaatttttatccatttt-tca 22934572  T
Q  221 atctatttccatgaacaag 239  Q
    |||| ||||||||||||||    
T  22934573 atctctttccatgaacaag 22934591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 110
Target Start/End: Complemental strand, 3786173 - 3786083
Alignment:
Q  22 aacaagataaagagagtagag-aaagagaacaacaccaaatagatgtgtac-cagattggtctaacaatgatctactatggggaagagaga 110  Q
    ||||||||||||||||||||| ||||||||||||||||||||  |||  || ||| |||||  |||||||| ||||||| ||| |||||||    
T  3786173 aacaagataaagagagtagagaaaagagaacaacaccaaataattgttaactcagtttggtacaacaatgacctactatagggtagagaga 3786083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 250
Target Start/End: Complemental strand, 33089987 - 33089859
Alignment:
Q  122 cactatcaatgagttctttgcaaagagattcaaaaacgatacaagaaattagcatcaatatcctctcgaagaacgaacttaatttctaccattttctcaa 221  Q
    ||||||||||||||||||| || |||||| |||||  | || || |||||||| |||| |  ||||| |||||| ||| |||||||||    | ||||||    
T  33089987 cactatcaatgagttctttacagagagatacaaaatggttataataaattagcttcaacaagctctccaagaacaaacataatttctattcatctctcaa 33089888  T
Q  222 tctatttccatgaacaagagactcgatga 250  Q
    ||| || |||||||||||| |||| ||||    
T  33089887 tctcttcccatgaacaagacactcaatga 33089859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 179
Target Start/End: Complemental strand, 12119657 - 12119591
Alignment:
Q  113 tctccacttcactatcaatgagttctttgcaaagagattcaaaaacgatacaagaaattagcatcaa 179  Q
    |||||| | |||||| |||||||||||| ||||||||| |||||  | |||||||||||||| ||||    
T  12119657 tctccaatccactataaatgagttctttacaaagagatacaaaagggttacaagaaattagcttcaa 12119591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 52065732 - 52065692
Alignment:
Q  96 tatggggaagagagagatctccacttcactatcaatgagtt 136  Q
    ||||||| |||||||  ||||||||||||||||||||||||    
T  52065732 tatgggggagagagatctctccacttcactatcaatgagtt 52065692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 94 - 241
Target Start/End: Original strand, 4535512 - 4535659
Alignment:
Q  94 actatggggaagagagagatctccacttcactatcaatgagttctttgcaaagagattcaaaaacgatacaagaaattagcatcaatatcctctcgaaga 193  Q
    |||||||||||||||||  ||||||||| |||||||||||||||||| ||||||||| |||||| | |||||||||||  | ||||||  ||||| ||||    
T  4535512 actatggggaagagagatctctccacttaactatcaatgagttctttacaaagagatacaaaaatgttacaagaaattgacttcaataagctctccaaga 4535611  T
Q  194 acgaacttaatttctaccattttctcaatctatttccatgaacaagag 241  Q
    || |||||||||||||||| || | |||||| || |  ||||||||||    
T  4535612 acaaacttaatttctaccaattccgcaatctcttactttgaacaagag 4535659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 12318476 - 12318710
Alignment:
Q  18 aataaacaagataaagagagtagagaaa-gagaacaacaccaaatagatgtgtacc-agattggtctaacaatgatctactatggggaagagagagatct 115  Q
    |||||||||||||||| ||||| ||||| ||||||||||||||| |  ||| |||| || | |||| || ||||| ||||||||||| |||||||  |||    
T  12318476 aataaacaagataaagggagtaaagaaaagagaacaacaccaaaaaattgtttacctagttcggtccaataatgaactactatgggggagagagatctct 12318575  T
Q  116 ccacttcactatcaatgagttctttgcaaagagattcaaaaacgatacaagaaattagcatcaatatcctctcgaagaacgaacttaatttctaccattt 215  Q
    |  ||||| |||||||||||||||    |||| || |||||  | |||||||||||||| |||| |  ||||| | |||| ||| |||||||||||  ||    
T  12318576 ctgcttcagtatcaatgagttcttaaagaagacatacaaaatggttacaagaaattagcttcaacaagctctccatgaacaaacctaatttctacccatt 12318675  T
Q  216 tctcaatctatttccatgaacaagagactcgatga 250  Q
    ||  ||||| |  |||||||||||| |||| ||||    
T  12318676 tccaaatctctacccatgaacaagaaactcaatga 12318710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 240
Target Start/End: Complemental strand, 22079514 - 22079307
Alignment:
Q  36 agtagagaaagagaacaacaccaaatagatgtgtacca-gattggtctaacaatgatctactatggggaagagagagatctc--cacttcactatcaatg 132  Q
    ||||||| || |||||||||||||| | |||| ||||| | |||||| | |||||| ||||| ||| | ||| |  ||||||  || | || ||||||||    
T  22079514 agtagaggaaaagaacaacaccaaagaaatgtttaccaagtttggtccagcaatgacctactttggaggagaaattgatctctccaatccaatatcaatg 22079415  T
Q  133 agttctttgcaaagagattcaaaaacgatacaagaaattagcatcaatatcctctcgaagaacgaacttaatttctaccattttctcaatctatttccat 232  Q
    |||||||| ||||||||| |||||  | |||||||||||||| | || |  ||| | |||||| ||| ||||||||||||||||  |||||| || ||||    
T  22079414 agttctttacaaagagatacaaaatggttacaagaaattagctttaacaagctcacaaagaacaaacataatttctaccatttttccaatctcttcccat 22079315  T
Q  233 gaacaaga 240  Q
    ||||||||    
T  22079314 gaacaaga 22079307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 108 - 222
Target Start/End: Complemental strand, 25652210 - 25652095
Alignment:
Q  108 agagatctc-cacttcactatcaatgagttctttgcaaagagattcaaaaacgatacaagaaattagcatcaatatcctctcgaagaacgaacttaattt 206  Q
    ||||||||| |||||||||||||| ||||||||| ||||||||| ||| |  | |||||||||||||| |||| |  ||||| || |||  |||||||||    
T  25652210 agagatctctcacttcactatcaaagagttctttacaaagagatacaagagagttacaagaaattagcttcaacaaactctcaaataacacacttaattt 25652111  T
Q  207 ctaccattttctcaat 222  Q
    |||||| |||||||||    
T  25652110 ctaccaatttctcaat 25652095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 119 - 245
Target Start/End: Original strand, 1050500 - 1050626
Alignment:
Q  119 cttcactatcaatgagttctttgcaaagagattcaaaaacgatacaagaaattagcatcaatatcctctcgaagaacgaacttaatttctaccattttct 218  Q
    |||||||||||| ||||| ||| ||||||||  |||||| | |||||||||||||| ||||||  ||||||||||||  || ||||||  |||  ||||     
T  1050500 cttcactatcaacgagttatttacaaagagacacaaaaatgttacaagaaattagcttcaataagctctcgaagaacacacctaattttcacccatttcc 1050599  T
Q  219 caatctatttccatgaacaagagactc 245  Q
    |||||| ||  ||||||||||||||||    
T  1050600 caatctcttcacatgaacaagagactc 1050626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 242
Target Start/End: Original strand, 16914229 - 16914355
Alignment:
Q  117 cacttcactatcaatgagttctttgcaaagagattcaaaaacgatacaagaaa-ttagcatcaatatcctctcgaagaacgaacttaatttctaccattt 215  Q
    |||||||||||||||||||||||| ||||||||| |||||  | || |||||| ||||| |||| |  ||||| |||||| ||| |||||| ||||  ||    
T  16914229 cacttcactatcaatgagttctttacaaagagatacaaaagggttagaagaaacttagcttcaacaggctctccaagaacaaacataatttttacccatt 16914328  T
Q  216 tctcaatctatttccatgaacaagaga 242  Q
    || |||||| || ||||||||||||||    
T  16914329 tcccaatctcttcccatgaacaagaga 16914355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 156
Target Start/End: Complemental strand, 41136030 - 41135895
Alignment:
Q  22 aacaagataaagagagtagagaaagagaacaacaccaaatagatgtgtaccagatt-ggtctaacaatgatctactatggggaagagagagatctccact 120  Q
    |||||||||||||||||||||||| |||||||||| ||| | |||| ||||  |||  ||| |||||||| ||||| || || |||||||  ||||  ||    
T  41136030 aacaagataaagagagtagagaaaaagaacaacacaaaaaaaatgtttacccaattaagtcgaacaatgacctactctgagggagagagatctctctgct 41135931  T
Q  121 tcactatcaatgagttctttgcaaagagattcaaaa 156  Q
    ||| |||||| ||||||||| |||| |||| |||||    
T  41135930 tcagtatcaacgagttctttacaaatagatacaaaa 41135895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 245
Target Start/End: Original strand, 9109470 - 9109602
Alignment:
Q  113 tctccacttcactatcaatgagttctttgcaaagagattcaaaaacgatacaagaaattagcatcaatatcctctcgaagaacgaacttaatttctacca 212  Q
    |||||| | ||||||||| | ||||||| ||||||||| |||||  | |||||||||||| | |||| |   |||| ||| |  |||||||||||| |||    
T  9109470 tctccaatacactatcaacgtgttctttacaaagagatacaaaagggttacaagaaattaacttcaacaagttctccaagtaaaaacttaatttcttcca 9109569  T
Q  213 ttttctcaatctatttccatgaacaagagactc 245  Q
    ||||||||||||  | |||||||||||| ||||    
T  9109570 ttttctcaatctcctaccatgaacaagacactc 9109602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 2926725 - 2926682
Alignment:
Q  18 aataaacaagataaagagagtagag-aaagagaacaacaccaaa 60  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||    
T  2926725 aataaacaagataaagagagtagagtaaaaagaacaacaccaaa 2926682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 28242518 - 28242477
Alignment:
Q  19 ataaacaagataaagagagtagag-aaagagaacaacaccaa 59  Q
    |||||||||||||||||||||||| ||||| |||||||||||    
T  28242518 ataaacaagataaagagagtagagaaaagataacaacaccaa 28242477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 224
Target Start/End: Original strand, 490269 - 490482
Alignment:
Q  16 aaaataaacaagataaagagagtagagaaagagaacaacaccaaatagatgtgtacc-agattggtctaacaatgatctactatggggaagagaga--ga 112  Q
    ||||||| |||||||||||||||| ||||| ||||||||| ||||||  ||| |||| || |  ||  |||| | | ||||||||||| |||||||  ||    
T  490269 aaaataatcaagataaagagagtaaagaaaaagaacaacatcaaataattgtttacccagttcagttcaacactaacctactatgggggagagagaatga 490368  T
Q  113 tctc--cacttcactatcaatgagttctttgcaaagagattcaaaaacgatacaagaaattagcatcaatatcctctcgaagaacgaacttaatttctac 210  Q
    ||||  | ||||||||||||||||| |||| |||||| || |||||  | |||||||||||||| |||| |  ||||| |||||| ||||||||||||||    
T  490369 tctctccgcttcactatcaatgagtactttacaaagatatacaaaagagttacaagaaattagcttcaacaagctctccaagaacaaacttaatttctac 490468  T
Q  211 cattttctcaatct 224  Q
     |||||||||||||    
T  490469 gattttctcaatct 490482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 224
Target Start/End: Original strand, 42261434 - 42261647
Alignment:
Q  16 aaaataaacaagataaagagagtagagaaagagaacaacaccaaatagatgtgtacc-agattggtctaacaatgatctactatggggaagagaga--ga 112  Q
    ||||||| |||||||||||||||| ||||| ||||||||| ||||||  ||| |||| || |  ||  |||| | | ||||||||||| |||||||  ||    
T  42261434 aaaataatcaagataaagagagtaaagaaaaagaacaacatcaaataattgtttacccagttcagttcaacactaacctactatgggggagagagaatga 42261533  T
Q  113 tctc--cacttcactatcaatgagttctttgcaaagagattcaaaaacgatacaagaaattagcatcaatatcctctcgaagaacgaacttaatttctac 210  Q
    ||||  | ||||||||||||||||| |||| |||||| || |||||  | |||||||||||||| |||| |  ||||| |||||| ||||||||||||||    
T  42261534 tctctccgcttcactatcaatgagtactttacaaagatatacaaaagagttacaagaaattagcttcaacaagctctccaagaacaaacttaatttctac 42261633  T
Q  211 cattttctcaatct 224  Q
     |||||||||||||    
T  42261634 gattttctcaatct 42261647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 122 - 250
Target Start/End: Original strand, 30218104 - 30218232
Alignment:
Q  122 cactatcaatgagttctttgcaaagagattcaaaaacgatacaagaaattagcatcaatatcctctcgaagaacgaacttaatttctaccattttctcaa 221  Q
    |||||||||||| || ||| ||||||||| |||||  | |||||||||||||| ||||||  ||||| |||||| ||| ||| |||||||  ||||||||    
T  30218104 cactatcaatgaattatttacaaagagatacaaaatggttacaagaaattagcttcaataagctctccaagaacaaacctaacttctacccatttctcaa 30218203  T
Q  222 tctatttccatgaacaagagactcgatga 250  Q
    |||  |||||||||||||| |||| ||||    
T  30218204 tctccttccatgaacaagacactcaatga 30218232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 33648387 - 33648177
Alignment:
Q  18 aataaacaagataaagagagtagagaaa-gagaacaacaccaaatagatgtgtacc-agattggtctaacaatgatctactatggggaagagagagatct 115  Q
    |||||||||||||||||||||||||||| || ||||||||||| || |||| |||| || | |||| |||||||| ||||| ||| | |||||  |||||    
T  33648387 aataaacaagataaagagagtagagaaaagacaacaacaccaa-taaatgtttacccagttcggtccaacaatgacctactctggaggagagattgatct 33648289  T
Q  116 c--cacttcactatcaatgagttctttgcaaagagattcaaaaacgatacaagaaattagcatcaatatcctctcgaagaacgaa-cttaatttctacca 212  Q
    |  || | | ||||||||||||||||| |||||| || |||||  | |||| ||||||||| |||| |  ||| | |||||| || | |||||| |||||    
T  33648288 ctccaatccgctatcaatgagttctttacaaagaaatacaaaagggttacaggaaattagcttcaacaagctcacaaagaacaaaccctaatttttacca 33648189  T
Q  213 ttttctcaatct 224  Q
    ||||||||||||    
T  33648188 ttttctcaatct 33648177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 179
Target Start/End: Complemental strand, 24398275 - 24398109
Alignment:
Q  20 taaacaagataaagagagtagagaaa----gagaacaacaccaaatagatgtgta-ccagattggtctaacaatgatctactatggggaagagagagatc 114  Q
    ||||||||||||||||||||||||||    || ||||||||||| ||  |||  | |||| | |||| |||||||| ||||||||||| |||||  ||||    
T  24398275 taaacaagataaagagagtagagaaaaatagataacaacaccaagtaattgttcagccagttcggtccaacaatgacctactatgggggagagattgatc 24398176  T
Q  115 tc--cacttcactatcaatgagttctttgcaaagagattcaaaaacgatacaagaaattagcatcaa 179  Q
    ||  || | || |||||||||||||||| ||||||||| |||||  | |||||||||||||| ||||    
T  24398175 tctccaatccattatcaatgagttctttacaaagagatacaaaagggttacaagaaattagcttcaa 24398109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 250
Target Start/End: Complemental strand, 41454367 - 41454215
Alignment:
Q  100 gggaagagagagatct--ccacttcactatcaatgagttctttgcaaagagattcaaaaacgatacaagaaattagcatcaatatcctctcgaagaacga 197  Q
    |||| |||||||||||  ||||||||||||||||||||||||| |||| | || |||||  | | | |||||||||| |||| |  ||||| || ||| |    
T  41454367 gggaggagagagatctgtccacttcactatcaatgagttctttacaaatatatacaaaagagttgctagaaattagcttcaacaagctctcaaaaaacaa 41454268  T
Q  198 acttaatttctaccattttctcaatctatttccatgaacaagagactcgatga 250  Q
    |  ||||||||||||||||   ||||| ||||||||| ||||| |||| ||||    
T  41454267 atctaatttctaccatttttcgaatctttttccatgatcaagatactcaatga 41454215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 233
Target Start/End: Original strand, 34811264 - 34811393
Alignment:
Q  105 gagagagatctccacttcactatcaatgagttctttgcaaagagattcaaaaacgatacaagaaattagcatcaatatcctctcgaagaacgaacttaat 204  Q
    |||| |||||| || |||||||||||||||||  || |||||||||  ||||  | ||||| |||||||| |||| |  ||||| |||| | | ||||||    
T  34811264 gagaaagatcttcatttcactatcaatgagtttcttacaaagagatataaaagagttacaataaattagcttcaacaagctctctaagagcaatcttaat 34811363  T
Q  205 ttctaccattttctc-aatctatttccatg 233  Q
    |||||||||||| || ||||| ||||||||    
T  34811364 ttctaccattttttcaaatctctttccatg 34811393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 30217998 - 30218040
Alignment:
Q  18 aataaacaagataaagagagtagagaaagagaacaacaccaaa 60  Q
    |||||||||||||||||||||||||||| ||| | ||||||||    
T  30217998 aataaacaagataaagagagtagagaaaaagagctacaccaaa 30218040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 174
Target Start/End: Original strand, 5723307 - 5723367
Alignment:
Q  113 tctccacttcactatcaatgagttctttgcaaagagattcaaaaacgatacaagaaattagc 174  Q
    |||||| | ||||||||||||||||||  ||||||||| |||||| | ||||||||||||||    
T  5723307 tctccaatccactatcaatgagttctta-caaagagatacaaaaaggttacaagaaattagc 5723367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 149
Target Start/End: Complemental strand, 16548736 - 16548683
Alignment:
Q  96 tatggggaagagagagatctccacttcactatcaatgagttctttgcaaagaga 149  Q
    |||||| ||||||||||| || | ||||||||||| ||||||||| ||||||||    
T  16548736 tatgggaaagagagagatttcaaattcactatcaaagagttcttttcaaagaga 16548683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 179
Target Start/End: Complemental strand, 4561200 - 4561140
Alignment:
Q  119 cttcactatcaatgagttctttgcaaagagattcaaaaacgatacaagaaattagcatcaa 179  Q
    |||||||| |||||| || ||| ||||||||| |||||| | |||||||||||||| ||||    
T  4561200 cttcactaacaatgaattttttacaaagagatacaaaaatgttacaagaaattagcttcaa 4561140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 42019882 - 42019984
Alignment:
Q  76 ttggtctaacaatgatctactatggggaagaga--gagatctccacttcactatcaatgag--ttctttgcaaagagattcaaaaacgatacaagaaatt 171  Q
    |||||| |||||| | |||||||||||||||||  ||  |||| | |||||||||||||||  || ||| ||||||||| |||||  | |||||||||||    
T  42019882 ttggtccaacaataacctactatggggaagagattgatctctcaaattcactatcaatgagttttttttacaaagagatacaaaagagttacaagaaatt 42019981  T
Q  172 agc 174  Q
    |||    
T  42019982 agc 42019984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 121 - 250
Target Start/End: Original strand, 3904675 - 3904805
Alignment:
Q  121 tcactatcaatgagttctttgcaaagagattcaaaaacgatacaagaaattagcatcaatatcctctcgaagaac-gaacttaatttctaccattttctc 219  Q
    |||||||||||||||||||| ||||||||| |||||  | ||||||||||||   ||||||  ||||| ||||||  ||| ||||||||||||||||| |    
T  3904675 tcactatcaatgagttctttacaaagagatgcaaaagtgttacaagaaattacattcaataggctctcaaagaacaaaacctaatttctaccattttccc 3904774  T
Q  220 aatctatttccatgaacaagagactcgatga 250  Q
    ||||| || | | ||||||||||||| ||||    
T  3904775 aatctcttcctaagaacaagagactcaatga 3904805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 179
Target Start/End: Original strand, 22328343 - 22328507
Alignment:
Q  18 aataaacaagataaagagagtagag-aaagagaacaacaccaaatagatgtgta-ccagattggtctaacaatgatctactatggggaagaga--gagat 113  Q
    ||||||||||||||||||||||||| ||||| |||||||||||| | || | || |||| | |||| |||||||| ||||| | ||| |||||  ||  |    
T  22328343 aataaacaagataaagagagtagagaaaagataacaacaccaaa-aaatatttacccagttcggtccaacaatgacctactctaggggagagattgatct 22328441  T
Q  114 ctccacttcactatcaatgagttctttgcaaagagattcaaaaacgatacaagaaattagcatcaa 179  Q
    ||| | | |||||| ||||| ||| |||||||||||| |||||  | |||||||||||||| ||||    
T  22328442 ctcaaatccactattaatgacttccttgcaaagagatacaaaagagttacaagaaattagcttcaa 22328507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 105 - 217
Target Start/End: Original strand, 43363512 - 43363628
Alignment:
Q  105 gagagagatct--ccacttcactatcaatgagttctttgcaa--agagattcaaaaacgatacaagaaattagcatcaatatcctctcgaagaacgaact 200  Q
    |||||||||||  ||||||||||||||||||||| ||| |||  |||||| |||||  | ||||| |||||||  |||| |  ||||| |||||| |||     
T  43363512 gagagagatctatccacttcactatcaatgagttatttacaaatagagatacaaaagagttacaataaattagtttcaacaagctctccaagaacaaacc 43363611  T
Q  201 taatttctaccattttc 217  Q
    |||||||||||||||||    
T  43363612 taatttctaccattttc 43363628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 250
Target Start/End: Complemental strand, 5116722 - 5116585
Alignment:
Q  113 tctccacttcactatcaatgagttctttgcaaagagattcaaaaacgatacaagaaattagcatcaatatcctctcgaagaacgaacttaatttctacca 212  Q
    |||||| ||||||||||||||||||||| ||||||||| |||||    ||||| |||||| | |||| |  || || |||||| ||| ||||||||||      
T  5116722 tctccaattcactatcaatgagttctttacaaagagatacaaaaggtttacaataaattatcttcaacaaactatccaagaacaaacctaatttctactc 5116623  T
Q  213 ttttctcaatctatttccatgaacaagagactcgatga 250  Q
    |||||  |||||  | |||| |||||||||||| ||||    
T  5116622 ttttcctaatctcctcccataaacaagagactcaatga 5116585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 211
Target Start/End: Original strand, 36574575 - 36574665
Alignment:
Q  122 cactatcaatgagttctttgcaaagagattcaaaaacgatacaagaaattagcatcaatatcctctcgaagaacgaa-cttaatttctacc 211  Q
    ||||||||||||||||||| |||||||||  ||||  | |||||||||||||| |||| |  ||| | |||||| || |||||||||||||    
T  36574575 cactatcaatgagttctttacaaagagatataaaagggttacaagaaattagcttcaacaaactcacaaagaacaaatcttaatttctacc 36574665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 250
Target Start/End: Original strand, 1360291 - 1360340
Alignment:
Q  201 taatttctaccattttctcaatctatttccatgaacaagagactcgatga 250  Q
    ||||||||||| ||||| ||||||  ||||||||||||||||||| ||||    
T  1360291 taatttctacctttttcccaatctcattccatgaacaagagactcaatga 1360340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 250
Target Start/End: Complemental strand, 26639390 - 26639301
Alignment:
Q  161 tacaagaaattagcatcaatatcctctcgaagaacgaacttaatttctaccattttctcaatctatttccatgaacaagagactcgatga 250  Q
    |||||||||||| |||||| |  ||||| ||||||  || ||||||||||||||||| |||||| || |||  || ||||||||| ||||    
T  26639390 tacaagaaattaacatcaacaaactctccaagaacatacctaatttctaccattttcacaatctcttcccaaaaagaagagactcaatga 26639301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 29608950 - 29608909
Alignment:
Q  19 ataaacaagataaagagagtagag-aaagagaacaacaccaa 59  Q
    |||||||||||||||||||||||| ||||| |||||||||||    
T  29608950 ataaacaagataaagagagtagagaaaagataacaacaccaa 29608909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 104 - 217
Target Start/End: Complemental strand, 25180 - 25067
Alignment:
Q  104 agagagagatctccacttcactatcaatgagttctttgcaaagagattcaaaaacgatacaagaaattagcatcaatatcctctcgaagaacgaacttaa 203  Q
    |||||||  |||| ||||||||||||||||||||||| ||||||||| |||||| | |||||||||||| | |||| |  ||||| |||||| ||  ||     
T  25180 agagagatctctctacttcactatcaatgagttctttacaaagagatacaaaaaggttacaagaaattaccttcaacaaactctcaaagaacaaaactag 25081  T
Q  204 tttctaccattttc 217  Q
    ||||||||||||||    
T  25080 tttctaccattttc 25067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 224
Target Start/End: Complemental strand, 5043843 - 5043633
Alignment:
Q  17 aaataaacaagataaagagagtagagaaa-gagaacaacaccaaatagatgtgtacc-agattggtctaacaatgatctactatggggaagagagagatc 114  Q
    ||||||||||||||||||||||| ||||| || |||||||||||  | ||||  ||| || | |||| |||||||| ||||||||| | |||||  ||||    
T  5043843 aaataaacaagataaagagagtaaagaaaagataacaacaccaagaa-atgttcacccagttcggtccaacaatgacctactatggaggagagattgatc 5043745  T
Q  115 tc--cacttcactatcaatgagttctttgcaaagagattcaaaaacgatacaagaaattagcatcaatatcctctcgaagaacgaacttaatttctac-c 211  Q
    ||  || |  |||||||||||||||||  ||||||||| ||||   | |||||||||||||| |||| |  ||| | |||||| ||| |||||||||| |    
T  5043744 tctccaatctactatcaatgagttctta-caaagagatacaaatgagttacaagaaattagcttcaacaagctcacaaagaacaaacctaatttctactc 5043646  T
Q  212 attttctcaatct 224  Q
    |||||||||||||    
T  5043645 attttctcaatct 5043633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 22424780 - 22424821
Alignment:
Q  19 ataaacaagataaagagagtagag-aaagagaacaacaccaa 59  Q
    |||||||||||||||||||||||| ||||| |||||||||||    
T  22424780 ataaacaagataaagagagtagagaaaagataacaacaccaa 22424821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 224
Target Start/End: Original strand, 2972990 - 2973101
Alignment:
Q  113 tctccacttcactatcaatgagttctttgcaaagagattcaaaaacgatacaagaaattagcatcaatatcctctcgaagaacgaacttaatttcta-cc 211  Q
    |||||| | |||||||||||||||| || ||||||||| ||||   | |||||||||||||| |||| |  ||| | |||||| ||| ||||||||| ||    
T  2972990 tctccaatccactatcaatgagttc-ttacaaagagatacaaatgggttacaagaaattagcttcaacaagctcacaaagaacaaacctaatttctaccc 2973088  T
Q  212 attttctcaatct 224  Q
    |||||| ||||||    
T  2973089 attttcccaatct 2973101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 224
Target Start/End: Original strand, 1292523 - 1292625
Alignment:
Q  122 cactatcaatgagttctttgcaaagagattcaaaaacgatacaagaaattagcatcaatatcctctcgaagaacgaacttaatttcta-ccattttctca 220  Q
    ||||||||||||||||||  ||||||||| ||||   | |||||||||||||| |||| |  ||| | |||||| ||||||||||||| |||||||||||    
T  1292523 cactatcaatgagttctta-caaagagatacaaatgagttacaagaaattagcttcaacaagctcacaaagaacaaacttaatttctacccattttctca 1292621  T
Q  221 atct 224  Q
    ||||    
T  1292622 atct 1292625  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 11137241 - 11137007
Alignment:
Q  18 aataaacaagataaagagagtagagaaag-agaacaacaccaaatagatgtgtacc--agattggtctaacaatgatctactatggggaagagagagatc 114  Q
    ||||||||||||||||||||||||||||  | ||||||| |||| |  | | ||||  || | |||| |||||||| |||||||| ||| ||   | |||    
T  11137241 aataaacaagataaagagagtagagaaaacaaaacaacatcaaagaattctttaccttagttcggtccaacaatgacctactatgaggagga---atatc 11137145  T
Q  115 tccacttcactatcaatgagttctttg---caaagagattcaaaaacgatacaagaaattagcatcaatatcctctcgaagaacgaacttaatttctacc 211  Q
    |||| ||||||||||||||||| |||    ||||||||| |||||  | || ||||||||||| |||| |   |||  ||| ||  ||||||||||||||    
T  11137144 tccaattcactatcaatgagtttttttttacaaagagatacaaaacggttataagaaattagcttcaacaagttcttcaaggacatacttaatttctacc 11137045  T
Q  212 attttctcaatctatttccatgaacaagagactcgatga 250  Q
    |||||||||||||  ||||||||| || |||||| ||||    
T  11137044 attttctcaatct-cttccatgaaaaatagactcaatga 11137007  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 250
Target Start/End: Original strand, 32902231 - 32902361
Alignment:
Q  120 ttcactatcaatgagttctttgcaaagagattcaaaaacgatacaagaaattagcatcaatatcctctcgaagaacgaacttaatttctaccattttctc 219  Q
    |||||||||||||| ||||||  |||||||| |||||| | |||||||||||||| |||| |   |||| | |||| ||| |||||||||||  ||| ||    
T  32902231 ttcactatcaatgaattctttagaaagagatacaaaaaagttacaagaaattagcttcaacagagtctccatgaacaaacataatttctacccatttatc 32902330  T
Q  220 aatctatttccatgaacaagagactcgatga 250  Q
    |||||  |  ||||| |||||||||| ||||    
T  32902331 aatctcctctcatgatcaagagactcaatga 32902361  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 245
Target Start/End: Original strand, 7444956 - 7445000
Alignment:
Q  201 taatttctaccattttctcaatctatttccatgaacaagagactc 245  Q
    |||||||||||| ||||||||||| || |||||||||||||||||    
T  7444956 taatttctaccaatttctcaatctcttcccatgaacaagagactc 7445000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 242
Target Start/End: Original strand, 12632821 - 12632864
Alignment:
Q  199 cttaatttctaccattttctcaatctatttccatgaacaagaga 242  Q
    |||||||||||||||||||||||||| ||  |||||||||||||    
T  12632821 cttaatttctaccattttctcaatctcttctcatgaacaagaga 12632864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 224
Target Start/End: Complemental strand, 18655508 - 18655406
Alignment:
Q  122 cactatcaatgagttctttgcaaagagattcaaaaacgatacaagaaattagcatcaatatcctctcgaagaacgaacttaatttcta-ccattttctca 220  Q
    ||||||||||||||||||  ||||||||| ||||   | |||||||||||||| |||| |  ||| | |||||| | ||||||||||| |||||||||||    
T  18655508 cactatcaatgagttctta-caaagagatacaaatgggttacaagaaattagcttcaacaagctcacaaagaacaaccttaatttctacccattttctca 18655410  T
Q  221 atct 224  Q
    ||||    
T  18655409 atct 18655406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 250
Target Start/End: Original strand, 3231859 - 3231984
Alignment:
Q  126 atcaatgagttctttgcaaagagattcaaaaacgatacaagaaattagcatcaatatcctctcgaagaacgaa-cttaatttctaccattttctcaatct 224  Q
    |||||| |||||||| ||||||||| |||||  | || || |||||||| |||| |  ||| |||||||| || | ||||||||||  ||||||||||||    
T  3231859 atcaataagttctttacaaagagatacaaaatggttaaaaaaaattagcttcaacaagctcacgaagaacaaagcctaatttctacatttttctcaatct 3231958  T
Q  225 atttccatgaacaagagactcgatga 250  Q
     || | | ||||||||||||| ||||    
T  3231959 cttcctaagaacaagagactcaatga 3231984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 156
Target Start/End: Complemental strand, 7597769 - 7597689
Alignment:
Q  78 ggtctaacaatgatctactatggggaagaga--gagatctccacttcactatcaatgagttctttgcaaagagattcaaaa 156  Q
    ||||||||||||| ||||||||||| |||||  ||  |||||| | |||||||||||  |||||| ||||||||| |||||    
T  7597769 ggtctaacaatgacctactatgggggagagattgatctctccaatccactatcaatgcattctttacaaagagatacaaaa 7597689  T

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Target: scaffold0219 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 245
Target Start/End: Original strand, 27456 - 27626
Alignment:
Q  78 ggtctaacaatgatctactatggggaagagagagatctc--cacttcactatcaatgagttctttgcaaagagattcaaaaacgatacaagaaattagca 175  Q
    |||| |||||||| ||||||||||| |||||  ||||||  || | |||||||||| |||| ||| ||||||||| ||||   | ||||||||||||||     
T  27456 ggtccaacaatgacctactatgggggagagattgatctctccaatccactatcaataagttatttacaaagagatacaaatgagttacaagaaattagct 27555  T
Q  176 tcaatatcctctcgaagaacga-acttaatttctaccattttctcaatctatttccatgaacaagagactc 245  Q
    |||| |  ||||  |||||| | || ||||||||||  ||||| |||||| || ||  |||||||||||||    
T  27556 tcaacaagctcttcaagaacaatacataatttctactcttttcacaatctcttccctagaacaagagactc 27626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 174
Target Start/End: Complemental strand, 114719 - 114659
Alignment:
Q  113 tctccacttcactatcaatgagttctttgcaaagagattcaaaaacgatacaagaaattagc 174  Q
    |||||| | ||||||||||||||||||  ||||||||| ||||| || ||||||||||||||    
T  114719 tctccaatccactatcaatgagttctta-caaagagatacaaaagcgttacaagaaattagc 114659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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