View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16994_low_15 (Length: 250)

Name: NF16994_low_15
Description: NF16994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16994_low_15
NF16994_low_15
[»] chr3 (12 HSPs)
chr3 (50-250)||(7907307-7907507)
chr3 (11-50)||(12033083-12033122)
chr3 (11-49)||(10555686-10555724)
chr3 (11-49)||(14866223-14866261)
chr3 (11-49)||(17132110-17132148)
chr3 (52-120)||(13223737-13223805)
chr3 (12-49)||(19234712-19234749)
chr3 (10-49)||(10389079-10389118)
chr3 (10-49)||(10414169-10414208)
chr3 (10-49)||(10420839-10420878)
chr3 (10-49)||(17240157-17240196)
chr3 (18-50)||(13202365-13202397)
[»] chr5 (11 HSPs)
chr5 (10-53)||(28908932-28908975)
chr5 (10-53)||(28945327-28945370)
chr5 (10-49)||(28888986-28889025)
chr5 (10-49)||(28895690-28895729)
chr5 (10-49)||(28924516-28924555)
chr5 (11-49)||(19237277-19237315)
chr5 (12-50)||(20782118-20782156)
chr5 (12-49)||(20773343-20773380)
chr5 (12-49)||(24929572-24929609)
chr5 (18-50)||(22468165-22468197)
chr5 (18-49)||(22461541-22461572)
[»] scaffold0609 (1 HSPs)
scaffold0609 (10-51)||(5492-5533)
[»] chr7 (8 HSPs)
chr7 (11-52)||(2971632-2971673)
chr7 (10-49)||(14231158-14231197)
chr7 (10-49)||(14319258-14319297)
chr7 (11-49)||(16091453-16091491)
chr7 (11-49)||(20906100-20906138)
chr7 (11-49)||(29180747-29180785)
chr7 (10-49)||(31155771-31155810)
chr7 (20-52)||(42043029-42043061)
[»] scaffold1419 (1 HSPs)
scaffold1419 (10-50)||(1587-1627)
[»] chr6 (11 HSPs)
chr6 (10-50)||(25640304-25640344)
chr6 (11-50)||(20007583-20007622)
chr6 (11-49)||(11288309-11288347)
chr6 (12-50)||(24563819-24563857)
chr6 (10-49)||(15458867-15458906)
chr6 (10-49)||(15465462-15465501)
chr6 (10-49)||(34639623-34639662)
chr6 (10-49)||(34646297-34646336)
chr6 (12-49)||(9098715-9098752)
chr6 (10-50)||(31252801-31252840)
chr6 (10-49)||(9187868-9187907)
[»] chr1 (6 HSPs)
chr1 (11-51)||(20850770-20850810)
chr1 (11-49)||(20857399-20857437)
chr1 (11-49)||(21706655-21706693)
chr1 (11-49)||(21711197-21711235)
chr1 (12-49)||(21904739-21904776)
chr1 (10-49)||(32651944-32651983)
[»] scaffold1469 (1 HSPs)
scaffold1469 (10-49)||(1727-1766)
[»] scaffold0720 (1 HSPs)
scaffold0720 (10-49)||(3041-3080)
[»] scaffold0034 (1 HSPs)
scaffold0034 (10-49)||(73668-73707)
[»] scaffold0007 (1 HSPs)
scaffold0007 (10-49)||(274059-274098)
[»] chr4 (5 HSPs)
chr4 (10-49)||(27906649-27906688)
chr4 (11-49)||(16146498-16146536)
chr4 (52-120)||(490370-490438)
chr4 (10-49)||(53484084-53484123)
chr4 (24-52)||(14554863-14554891)
[»] chr2 (12 HSPs)
chr2 (10-49)||(26885567-26885606)
chr2 (10-49)||(27207344-27207383)
chr2 (11-49)||(25180581-25180619)
chr2 (12-49)||(27366185-27366222)
chr2 (10-49)||(5705660-5705699)
chr2 (10-49)||(21908732-21908771)
chr2 (20-51)||(23149946-23149977)
chr2 (10-49)||(23265513-23265552)
chr2 (10-49)||(23280581-23280620)
chr2 (20-51)||(23561736-23561767)
chr2 (20-49)||(25351383-25351412)
chr2 (19-51)||(22813337-22813369)
[»] scaffold1318 (1 HSPs)
scaffold1318 (11-49)||(1596-1634)
[»] scaffold0072 (1 HSPs)
scaffold0072 (11-49)||(49609-49647)
[»] scaffold0053 (1 HSPs)
scaffold0053 (11-49)||(79129-79167)
[»] scaffold0023 (1 HSPs)
scaffold0023 (11-49)||(135816-135854)
[»] chr8 (7 HSPs)
chr8 (11-49)||(6784104-6784142)
chr8 (11-49)||(24320310-24320348)
chr8 (11-49)||(19224205-19224243)
chr8 (10-49)||(29643025-29643064)
chr8 (19-52)||(22057061-22057094)
chr8 (10-50)||(14056215-14056255)
chr8 (10-50)||(21298952-21298992)
[»] scaffold0249 (1 HSPs)
scaffold0249 (10-49)||(13533-13572)
[»] scaffold0131 (1 HSPs)
scaffold0131 (10-49)||(1374-1413)
[»] scaffold0039 (1 HSPs)
scaffold0039 (11-49)||(160-198)
[»] scaffold0664 (1 HSPs)
scaffold0664 (10-49)||(3073-3112)
[»] scaffold0333 (1 HSPs)
scaffold0333 (10-49)||(142-181)
[»] scaffold0222 (1 HSPs)
scaffold0222 (10-49)||(17192-17231)
[»] scaffold0146 (1 HSPs)
scaffold0146 (10-49)||(14004-14043)
[»] scaffold0126 (1 HSPs)
scaffold0126 (10-49)||(45542-45581)
[»] scaffold0098 (1 HSPs)
scaffold0098 (11-42)||(191-222)
[»] scaffold0020 (1 HSPs)
scaffold0020 (10-49)||(101573-101612)
[»] scaffold0004 (1 HSPs)
scaffold0004 (10-49)||(117268-117307)
[»] scaffold0298 (1 HSPs)
scaffold0298 (24-53)||(985-1014)
[»] scaffold0124 (1 HSPs)
scaffold0124 (24-53)||(15620-15649)
[»] scaffold0669 (1 HSPs)
scaffold0669 (24-52)||(550-578)
[»] scaffold0026 (1 HSPs)
scaffold0026 (10-50)||(121066-121106)
[»] scaffold0002 (1 HSPs)
scaffold0002 (24-52)||(371736-371764)


Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 50 - 250
Target Start/End: Complemental strand, 7907507 - 7907307
Alignment:
Q  50 gtgactggatcacctccttttcaggtagaactaatgattttctaggttgtttagttttacggtgcctcacatgccaatgaacaatagtcatatgaaagag 149  Q
    ||||||||||||||||||||||||  |||||||||| ||||||| ||||||| |||||||  ||||||||||||||||||||||||| ||||||||||||    
T  7907507 gtgactggatcacctccttttcagagagaactaatgcttttctacgttgtttcgttttacactgcctcacatgccaatgaacaatagccatatgaaagag 7907408  T
Q  150 acctacatttaacaagagtctttggataagatagcaaagactctattccaatttaaataaaagtctttgatttaaatccaatcattaaaatgcaacaata 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  7907407 acctacatttaacaagagtctttggataagatagcaaagactctattccaatttaaataaaagtctttgatttaaatccaatcatttaaatgcaacaata 7907308  T
Q  250 t 250  Q
    |    
T  7907307 t 7907307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 12033122 - 12033083
Alignment:
Q  11 taattctaaaaataataaaataacgactagggcgttacag 50  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  12033122 taattctaaaaataataaaataacgactagggcgttacag 12033083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 10555686 - 10555724
Alignment:
Q  11 taattctaaaaataataaaataacgactagggcgttaca 49  Q
    |||||||||||||||||||||||||||||||||||||||    
T  10555686 taattctaaaaataataaaataacgactagggcgttaca 10555724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 14866223 - 14866261
Alignment:
Q  11 taattctaaaaataataaaataacgactagggcgttaca 49  Q
    |||||||||||||||||||||||||||||||||||||||    
T  14866223 taattctaaaaataataaaataacgactagggcgttaca 14866261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 17132110 - 17132148
Alignment:
Q  11 taattctaaaaataataaaataacgactagggcgttaca 49  Q
    |||||||||||||||||||||||||||||||||||||||    
T  17132110 taattctaaaaataataaaataacgactagggcgttaca 17132148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 13223805 - 13223737
Alignment:
Q  52 gactggatcacctccttttcaggtagaactaatgattttctaggttgtttagttttacggtgcctcaca 120  Q
    ||||||||||||||||||||||| ||||||||   |||||| |||||||| |||||||  |||||||||    
T  13223805 gactggatcacctccttttcagggagaactaaaacttttctgggttgtttggttttacactgcctcaca 13223737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 19234749 - 19234712
Alignment:
Q  12 aattctaaaaataataaaataacgactagggcgttaca 49  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  19234749 aattctaaaaataataaaataacaactagggcgttaca 19234712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 10389118 - 10389079
Alignment:
Q  10 ataattctaaaaataataaaataacgactagggcgttaca 49  Q
    ||||||| |||||||||||||||| |||||||||||||||    
T  10389118 ataattccaaaaataataaaataatgactagggcgttaca 10389079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 10414208 - 10414169
Alignment:
Q  10 ataattctaaaaataataaaataacgactagggcgttaca 49  Q
    ||||||| |||||||||||||||| |||||||||||||||    
T  10414208 ataattccaaaaataataaaataatgactagggcgttaca 10414169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 10420878 - 10420839
Alignment:
Q  10 ataattctaaaaataataaaataacgactagggcgttaca 49  Q
    ||||||| |||||||||||||||| |||||||||||||||    
T  10420878 ataattccaaaaataataaaataatgactagggcgttaca 10420839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 17240196 - 17240157
Alignment:
Q  10 ataattctaaaaataataaaataacgactagggcgttaca 49  Q
    ||||||||||||  ||||||||||||||||||||||||||    
T  17240196 ataattctaaaataaataaaataacgactagggcgttaca 17240157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 13202397 - 13202365
Alignment:
Q  18 aaaaataataaaataacgactagggcgttacag 50  Q
    ||||||||| |||||||||||||||||||||||    
T  13202397 aaaaataattaaataacgactagggcgttacag 13202365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 28908975 - 28908932
Alignment:
Q  10 ataattctaaaaataataaaataacgactagggcgttacagtga 53  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  28908975 ataattctaaaaataataaaataacgactagggcgttacagtga 28908932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 28945370 - 28945327
Alignment:
Q  10 ataattctaaaaataataaaataacgactagggcgttacagtga 53  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  28945370 ataattctaaaaataataaaataacgactagggcgttacagtga 28945327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 28889025 - 28888986
Alignment:
Q  10 ataattctaaaaataataaaataacgactagggcgttaca 49  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  28889025 ataattctaaaaataataaaataacgactagggcgttaca 28888986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 28895729 - 28895690
Alignment:
Q  10 ataattctaaaaataataaaataacgactagggcgttaca 49  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  28895729 ataattctaaaaataataaaataacgactagggcgttaca 28895690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 28924555 - 28924516
Alignment:
Q  10 ataattctaaaaataataaaataacgactagggcgttaca 49  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  28924555 ataattctaaaaataataaaataacgactagggcgttaca 28924516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 19237277 - 19237315
Alignment:
Q  11 taattctaaaaataataaaataacgactagggcgttaca 49  Q
    |||||||||||||||||||||||||||||||||||||||    
T  19237277 taattctaaaaataataaaataacgactagggcgttaca 19237315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 20782118 - 20782156
Alignment:
Q  12 aattctaaaaataataaaataacgactagggcgttacag 50  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  20782118 aattctaaaaataataaaataacaactagggcgttacag 20782156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 20773343 - 20773380
Alignment:
Q  12 aattctaaaaataataaaataacgactagggcgttaca 49  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  20773343 aattctaaaaataataaaataacaactagggcgttaca 20773380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 24929609 - 24929572
Alignment:
Q  12 aattctaaaaataataaaataacgactagggcgttaca 49  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  24929609 aattctaaaaataataaaataacaactagggcgttaca 24929572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 22468165 - 22468197
Alignment:
Q  18 aaaaataataaaataacgactagggcgttacag 50  Q
    |||||||||||||||||||||||||||||||||    
T  22468165 aaaaataataaaataacgactagggcgttacag 22468197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 49
Target Start/End: Original strand, 22461541 - 22461572
Alignment:
Q  18 aaaaataataaaataacgactagggcgttaca 49  Q
    ||||||||||||||||||||||||||||||||    
T  22461541 aaaaataataaaataacgactagggcgttaca 22461572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0609 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0609
Description:

Target: scaffold0609; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 5533 - 5492
Alignment:
Q  10 ataattctaaaaataataaaataacgactagggcgttacagt 51  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  5533 ataattctaaaaataataaaataacgactagggcgttacagt 5492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 2971632 - 2971673
Alignment:
Q  11 taattctaaaaataataaaataacgactagggcgttacagtg 52  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  2971632 taattctaaaaataataaaataacgactagggcgttacagtg 2971673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 14231158 - 14231197
Alignment:
Q  10 ataattctaaaaataataaaataacgactagggcgttaca 49  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  14231158 ataattctaaaaataataaaataacgactagggcgttaca 14231197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 14319297 - 14319258
Alignment:
Q  10 ataattctaaaaataataaaataacgactagggcgttaca 49  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  14319297 ataattctaaaaataataaaataacgactagggcgttaca 14319258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 16091453 - 16091491
Alignment:
Q  11 taattctaaaaataataaaataacgactagggcgttaca 49  Q
    |||||||||||||||||||||||||||||||||||||||    
T  16091453 taattctaaaaataataaaataacgactagggcgttaca 16091491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 20906138 - 20906100
Alignment:
Q  11 taattctaaaaataataaaataacgactagggcgttaca 49  Q
    |||||||||||||||||||||||||||||||||||||||    
T  20906138 taattctaaaaataataaaataacgactagggcgttaca 20906100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 29180785 - 29180747
Alignment:
Q  11 taattctaaaaataataaaataacgactagggcgttaca 49  Q
    |||||||||||||||||||||||||||||||||||||||    
T  29180785 taattctaaaaataataaaataacgactagggcgttaca 29180747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 31155771 - 31155810
Alignment:
Q  10 ataattctaaaaataataaaataacgactagggcgttaca 49  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  31155771 ataattccaaaaataataaaataacgactagggcgttaca 31155810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 42043029 - 42043061
Alignment:
Q  20 aaataataaaataacgactagggcgttacagtg 52  Q
    ||||||| |||||||||||||||||||||||||    
T  42043029 aaataattaaataacgactagggcgttacagtg 42043061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1419 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold1419
Description:

Target: scaffold1419; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 1627 - 1587
Alignment:
Q  10 ataattctaaaaataataaaataacgactagggcgttacag 50  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  1627 ataattctaaaaataataaaataacgactagggcgttacag 1587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 25640304 - 25640344
Alignment:
Q  10 ataattctaaaaataataaaataacgactagggcgttacag 50  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  25640304 ataattctaaaaataataaaataacgactagggcgttacag 25640344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 20007622 - 20007583
Alignment:
Q  11 taattctaaaaataataaaataacgactagggcgttacag 50  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  20007622 taattctaaaaataataaaataacgactagggcgttacag 20007583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 11288347 - 11288309
Alignment:
Q  11 taattctaaaaataataaaataacgactagggcgttaca 49  Q
    |||||||||||||||||||||||||||||||||||||||    
T  11288347 taattctaaaaataataaaataacgactagggcgttaca 11288309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 24563819 - 24563857
Alignment:
Q  12 aattctaaaaataataaaataacgactagggcgttacag 50  Q
    |||||||||||||||||||||||||||||||||||||||    
T  24563819 aattctaaaaataataaaataacgactagggcgttacag 24563857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 15458867 - 15458906
Alignment:
Q  10 ataattctaaaaataataaaataacgactagggcgttaca 49  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  15458867 ataattccaaaaataataaaataacgactagggcgttaca 15458906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 15465462 - 15465501
Alignment:
Q  10 ataattctaaaaataataaaataacgactagggcgttaca 49  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  15465462 ataattccaaaaataataaaataacgactagggcgttaca 15465501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 34639662 - 34639623
Alignment:
Q  10 ataattctaaaaataataaaataacgactagggcgttaca 49  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  34639662 ataattccaaaaataataaaataacgactagggcgttaca 34639623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 34646336 - 34646297
Alignment:
Q  10 ataattctaaaaataataaaataacgactagggcgttaca 49  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  34646336 ataattccaaaaataataaaataacgactagggcgttaca 34646297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 9098752 - 9098715
Alignment:
Q  12 aattctaaaaataataaaataacgactagggcgttaca 49  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  9098752 aattctaaaaataataaaataacaactagggcgttaca 9098715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 31252801 - 31252840
Alignment:
Q  10 ataattctaaaaataataaaataacgactagggcgttacag 50  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  31252801 ataattctaaaaataataaaat-acgactagggcgttacag 31252840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 9187868 - 9187907
Alignment:
Q  10 ataattctaaaaataataaaataacgactagggcgttaca 49  Q
    ||||||||||||  ||||||||||||||||||||||||||    
T  9187868 ataattctaaaataaataaaataacgactagggcgttaca 9187907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 20850810 - 20850770
Alignment:
Q  11 taattctaaaaataataaaataacgactagggcgttacagt 51  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  20850810 taattctaaaaataataaaataacgactagggcgttacagt 20850770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 20857437 - 20857399
Alignment:
Q  11 taattctaaaaataataaaataacgactagggcgttaca 49  Q
    |||||||||||||||||||||||||||||||||||||||    
T  20857437 taattctaaaaataataaaataacgactagggcgttaca 20857399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 21706655 - 21706693
Alignment:
Q  11 taattctaaaaataataaaataacgactagggcgttaca 49  Q
    |||||||||||||||||||||||||||||||||||||||    
T  21706655 taattctaaaaataataaaataacgactagggcgttaca 21706693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 21711197 - 21711235
Alignment:
Q  11 taattctaaaaataataaaataacgactagggcgttaca 49  Q
    |||||||||||||||||||||||||||||||||||||||    
T  21711197 taattctaaaaataataaaataacgactagggcgttaca 21711235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 21904739 - 21904776
Alignment:
Q  12 aattctaaaaataataaaataacgactagggcgttaca 49  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  21904739 aattctaaaaataataaaataacaactagggcgttaca 21904776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 32651944 - 32651983
Alignment:
Q  10 ataattctaaaaataataaaataacgactagggcgttaca 49  Q
    ||||||||||||  ||||||||||||||||||||||||||    
T  32651944 ataattctaaaataaataaaataacgactagggcgttaca 32651983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1469 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold1469
Description:

Target: scaffold1469; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 1727 - 1766
Alignment:
Q  10 ataattctaaaaataataaaataacgactagggcgttaca 49  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  1727 ataattctaaaaataataaaataacgactagggcgttaca 1766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0720 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 3080 - 3041
Alignment:
Q  10 ataattctaaaaataataaaataacgactagggcgttaca 49  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  3080 ataattctaaaaataataaaataacgactagggcgttaca 3041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 73668 - 73707
Alignment:
Q  10 ataattctaaaaataataaaataacgactagggcgttaca 49  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  73668 ataattctaaaaataataaaataacgactagggcgttaca 73707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 274059 - 274098
Alignment:
Q  10 ataattctaaaaataataaaataacgactagggcgttaca 49  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  274059 ataattctaaaaataataaaataacgactagggcgttaca 274098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 27906649 - 27906688
Alignment:
Q  10 ataattctaaaaataataaaataacgactagggcgttaca 49  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  27906649 ataattctaaaaataataaaataacgactagggcgttaca 27906688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 16146536 - 16146498
Alignment:
Q  11 taattctaaaaataataaaataacgactagggcgttaca 49  Q
    |||||||||||||||||||||||||||||||||||||||    
T  16146536 taattctaaaaataataaaataacgactagggcgttaca 16146498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 490370 - 490438
Alignment:
Q  52 gactggatcacctccttttcaggtagaactaatgattttctaggttgtttagttttacggtgcctcaca 120  Q
    ||||||||||||||||||||||| ||||||||   |||||| |||||||| |||||||  |||||||||    
T  490370 gactggatcacctccttttcagggagaactaaaacttttctgggttgtttggttttacactgcctcaca 490438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 53484084 - 53484123
Alignment:
Q  10 ataattctaaaaataataaaataacgactagggcgttaca 49  Q
    ||||||| |||||||||| |||||||||||||||||||||    
T  53484084 ataattccaaaaataatagaataacgactagggcgttaca 53484123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 14554891 - 14554863
Alignment:
Q  24 aataaaataacgactagggcgttacagtg 52  Q
    |||||||||||||||||||||||||||||    
T  14554891 aataaaataacgactagggcgttacagtg 14554863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 26885567 - 26885606
Alignment:
Q  10 ataattctaaaaataataaaataacgactagggcgttaca 49  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  26885567 ataattctaaaaataataaaataacgactagggcgttaca 26885606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 27207383 - 27207344
Alignment:
Q  10 ataattctaaaaataataaaataacgactagggcgttaca 49  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  27207383 ataattctaaaaataataaaataacgactagggcgttaca 27207344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 25180619 - 25180581
Alignment:
Q  11 taattctaaaaataataaaataacgactagggcgttaca 49  Q
    |||||||||||||||||||||||||||||||||||||||    
T  25180619 taattctaaaaataataaaataacgactagggcgttaca 25180581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 27366222 - 27366185
Alignment:
Q  12 aattctaaaaataataaaataacgactagggcgttaca 49  Q
    ||||||||||||||||||||||||||||||||||||||    
T  27366222 aattctaaaaataataaaataacgactagggcgttaca 27366185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 5705699 - 5705660
Alignment:
Q  10 ataattctaaaaataataaaataacgactagggcgttaca 49  Q
    ||||||| |||||||||| |||||||||||||||||||||    
T  5705699 ataattccaaaaataatagaataacgactagggcgttaca 5705660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 21908732 - 21908771
Alignment:
Q  10 ataattctaaaaataataaaataacgactagggcgttaca 49  Q
    ||||||||||||  ||||||||||||||||||||||||||    
T  21908732 ataattctaaaatgaataaaataacgactagggcgttaca 21908771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 51
Target Start/End: Original strand, 23149946 - 23149977
Alignment:
Q  20 aaataataaaataacgactagggcgttacagt 51  Q
    ||||||||||||||||||||||||||||||||    
T  23149946 aaataataaaataacgactagggcgttacagt 23149977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 23265513 - 23265552
Alignment:
Q  10 ataattctaaaaataataaaataacgactagggcgttaca 49  Q
    ||||||||||||  ||||||||||||||||||||||||||    
T  23265513 ataattctaaaataaataaaataacgactagggcgttaca 23265552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 23280581 - 23280620
Alignment:
Q  10 ataattctaaaaataataaaataacgactagggcgttaca 49  Q
    ||||||||||||  ||||||||||||||||||||||||||    
T  23280581 ataattctaaaataaataaaataacgactagggcgttaca 23280620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 51
Target Start/End: Original strand, 23561736 - 23561767
Alignment:
Q  20 aaataataaaataacgactagggcgttacagt 51  Q
    ||||||||||||||||||||||||||||||||    
T  23561736 aaataataaaataacgactagggcgttacagt 23561767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 25351412 - 25351383
Alignment:
Q  20 aaataataaaataacgactagggcgttaca 49  Q
    ||||||||||||||||||||||||||||||    
T  25351412 aaataataaaataacgactagggcgttaca 25351383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 22813337 - 22813369
Alignment:
Q  19 aaaataataaaataacgactagggcgttacagt 51  Q
    |||||||| ||||||||||||||||||||||||    
T  22813337 aaaataattaaataacgactagggcgttacagt 22813369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1318 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold1318
Description:

Target: scaffold1318; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 1634 - 1596
Alignment:
Q  11 taattctaaaaataataaaataacgactagggcgttaca 49  Q
    |||||||||||||||||||||||||||||||||||||||    
T  1634 taattctaaaaataataaaataacgactagggcgttaca 1596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 49647 - 49609
Alignment:
Q  11 taattctaaaaataataaaataacgactagggcgttaca 49  Q
    |||||||||||||||||||||||||||||||||||||||    
T  49647 taattctaaaaataataaaataacgactagggcgttaca 49609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 79167 - 79129
Alignment:
Q  11 taattctaaaaataataaaataacgactagggcgttaca 49  Q
    |||||||||||||||||||||||||||||||||||||||    
T  79167 taattctaaaaataataaaataacgactagggcgttaca 79129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 135816 - 135854
Alignment:
Q  11 taattctaaaaataataaaataacgactagggcgttaca 49  Q
    |||||||||||||||||||||||||||||||||||||||    
T  135816 taattctaaaaataataaaataacgactagggcgttaca 135854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 6784142 - 6784104
Alignment:
Q  11 taattctaaaaataataaaataacgactagggcgttaca 49  Q
    |||||||||||||||||||||||||||||||||||||||    
T  6784142 taattctaaaaataataaaataacgactagggcgttaca 6784104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 24320348 - 24320310
Alignment:
Q  11 taattctaaaaataataaaataacgactagggcgttaca 49  Q
    |||||||||||||||||||||||||||||||||||||||    
T  24320348 taattctaaaaataataaaataacgactagggcgttaca 24320310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 19224243 - 19224205
Alignment:
Q  11 taattctaaaaataataaaataacgactagggcgttaca 49  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  19224243 taattctaaaaataataaaaaaacgactagggcgttaca 19224205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 29643064 - 29643025
Alignment:
Q  10 ataattctaaaaataataaaataacgactagggcgttaca 49  Q
    ||||||||||||  ||||||||||||||||||||||||||    
T  29643064 ataattctaaaataaataaaataacgactagggcgttaca 29643025  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 22057061 - 22057094
Alignment:
Q  19 aaaataataaaataacgactagggcgttacagtg 52  Q
    |||||||| |||||||||||||||||||||||||    
T  22057061 aaaataattaaataacgactagggcgttacagtg 22057094  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 14056255 - 14056215
Alignment:
Q  10 ataattctaaaaataataaaataacgactagggcgttacag 50  Q
    ||||||| ||||  |||||||||||||||||||||||||||    
T  14056255 ataattccaaaataaataaaataacgactagggcgttacag 14056215  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 21298992 - 21298952
Alignment:
Q  10 ataattctaaaaataataaaataacgactagggcgttacag 50  Q
    ||||||| ||||  |||||||||||||||||||||||||||    
T  21298992 ataattccaaaataaataaaataacgactagggcgttacag 21298952  T

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Target: scaffold0249 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 13572 - 13533
Alignment:
Q  10 ataattctaaaaataataaaataacgactagggcgttaca 49  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  13572 ataattccaaaaataataaaataacgactagggcgttaca 13533  T

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Target: scaffold0131 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 1374 - 1413
Alignment:
Q  10 ataattctaaaaataataaaataacgactagggcgttaca 49  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  1374 ataactctaaaaataataaaataacgactagggcgttaca 1413  T

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Target: scaffold0039 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 160 - 198
Alignment:
Q  11 taattctaaaaataataaaataacgactagggcgttaca 49  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  160 taattctaaaaagaataaaataacgactagggcgttaca 198  T

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Target: scaffold0664 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0664
Description:

Target: scaffold0664; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 3073 - 3112
Alignment:
Q  10 ataattctaaaaataataaaataacgactagggcgttaca 49  Q
    ||||||||||||  ||||||||||||||||||||||||||    
T  3073 ataattctaaaataaataaaataacgactagggcgttaca 3112  T

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Target: scaffold0333 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0333
Description:

Target: scaffold0333; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 142 - 181
Alignment:
Q  10 ataattctaaaaataataaaataacgactagggcgttaca 49  Q
    ||||||||||||  ||||||||||||||||||||||||||    
T  142 ataattctaaaataaataaaataacgactagggcgttaca 181  T

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Target: scaffold0222 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 17192 - 17231
Alignment:
Q  10 ataattctaaaaataataaaataacgactagggcgttaca 49  Q
    ||||||||||||  ||||||||||||||||||||||||||    
T  17192 ataattctaaaataaataaaataacgactagggcgttaca 17231  T

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Target: scaffold0146 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 14004 - 14043
Alignment:
Q  10 ataattctaaaaataataaaataacgactagggcgttaca 49  Q
    ||||||||||||  ||||||||||||||||||||||||||    
T  14004 ataattctaaaataaataaaataacgactagggcgttaca 14043  T

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Target: scaffold0126 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 45542 - 45581
Alignment:
Q  10 ataattctaaaaataataaaataacgactagggcgttaca 49  Q
    ||||||||||||  ||||||||||||||||||||||||||    
T  45542 ataattctaaaataaataaaataacgactagggcgttaca 45581  T

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Target: scaffold0098 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 42
Target Start/End: Original strand, 191 - 222
Alignment:
Q  11 taattctaaaaataataaaataacgactaggg 42  Q
    ||||||||||||||||||||||||||||||||    
T  191 taattctaaaaataataaaataacgactaggg 222  T

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Target: scaffold0020 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 101612 - 101573
Alignment:
Q  10 ataattctaaaaataataaaataacgactagggcgttaca 49  Q
    ||||||||||||  ||||||||||||||||||||||||||    
T  101612 ataattctaaaataaataaaataacgactagggcgttaca 101573  T

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Target: scaffold0004 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 117268 - 117307
Alignment:
Q  10 ataattctaaaaataataaaataacgactagggcgttaca 49  Q
    ||||||||||||  ||||||||||||||||||||||||||    
T  117268 ataattctaaaataaataaaataacgactagggcgttaca 117307  T

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Target: scaffold0298 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0298
Description:

Target: scaffold0298; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 53
Target Start/End: Original strand, 985 - 1014
Alignment:
Q  24 aataaaataacgactagggcgttacagtga 53  Q
    ||||||||||||||||||||||||||||||    
T  985 aataaaataacgactagggcgttacagtga 1014  T

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Target: scaffold0124 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 53
Target Start/End: Complemental strand, 15649 - 15620
Alignment:
Q  24 aataaaataacgactagggcgttacagtga 53  Q
    ||||||||||||||||||||||||||||||    
T  15649 aataaaataacgactagggcgttacagtga 15620  T

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Target: scaffold0669 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0669
Description:

Target: scaffold0669; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 578 - 550
Alignment:
Q  24 aataaaataacgactagggcgttacagtg 52  Q
    |||||||||||||||||||||||||||||    
T  578 aataaaataacgactagggcgttacagtg 550  T

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Target: scaffold0026 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 121106 - 121066
Alignment:
Q  10 ataattctaaaaataataaaataacgactagggcgttacag 50  Q
    ||||||| ||||  |||||||||||||||||||||||||||    
T  121106 ataattccaaaataaataaaataacgactagggcgttacag 121066  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 371736 - 371764
Alignment:
Q  24 aataaaataacgactagggcgttacagtg 52  Q
    |||||||||||||||||||||||||||||    
T  371736 aataaaataacgactagggcgttacagtg 371764  T

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