View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16994_low_16 (Length: 237)
Name: NF16994_low_16
Description: NF16994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16994_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 7907017 - 7906801
Alignment:
| Q |
1 |
atttcctaatttcgttaaatactgctgttttcagaaagatatcttacatacaaagattctccaccacaattttctatttcctctcccacaaagaaacatc |
100 |
Q |
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| T |
7907017 |
atttcctaatttcgttaaatattggt---ttcagaaagatatcttacatacaaagattctccaccacaattttctatttcctctcccacaaagaaacatc |
7906921 |
T |
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| Q |
101 |
cctttgannnnnnnacttcccaaatttcaattgtcaaaagttcttttatctcttaattattactcttttccnnnnnnnntccactttctcaatttgttta |
200 |
Q |
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||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
7906920 |
cctttgatttttttacttcccaaatttcaattgtcaaaagttcatttatctcttaattattactcttttcc-aaaaaaatccactttctcaatttgttta |
7906822 |
T |
|
| Q |
201 |
gtacttcttctgctttgttgc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
7906821 |
gtacttcttctgctttgttgc |
7906801 |
T |
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