View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16994_low_2 (Length: 679)
Name: NF16994_low_2
Description: NF16994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16994_low_2 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] scaffold0197 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 583; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 18 - 679
Target Start/End: Complemental strand, 34748716 - 34748054
Alignment:
| Q |
18 |
accagacgctggaagggaagtttgcggatgaggagttcggtgctcttctggtacttacggatctcacggagagcgacggttcctggcctgaaacggtgag |
117 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
34748716 |
accagacgctggaaggggagtttgcggatgaggagttcggtgctcttctggtacttacggatctcacgtagagcgacggttcctggtctgaaacggtgag |
34748617 |
T |
|
| Q |
118 |
gtttcttcactccaccggtggccggagcagatttgcgagcggcttttgtggcgagttgcttccttggagctttacctccggtggatttgcgagcggtttg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
34748616 |
gtttcttcactccaccggtggccggagcagatttgcgagcggcttttgtggctagttgcttccttggagctttacctccagtggatttgcgagcggtttg |
34748517 |
T |
|
| Q |
218 |
cttggtacgtgccatagatgctgaaaaataactgagaagaacgttttctagcagaaaagcttgaaggttgttttggtgatttcagattgagagtgatgaa |
317 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34748516 |
cttggtacgtgccattgatgctgaaaaataactgagaaaaacggtttctagcagaaaagcttgaaggttgttttggtgatttcagattgagagtgatgaa |
34748417 |
T |
|
| Q |
318 |
gaagaagggatgaaagaggtgagttatataatgatatgattttgtgcgggttttgaaatttgagaagagggtgagtggggtgtgattgtggccgttgatt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34748416 |
gaagaagggatgaaagaggtgagttatataatgatatgattttgtgcgggttttgaaatttgagaagagggtgagtggggtgtgattgtggccgttgatt |
34748317 |
T |
|
| Q |
418 |
attggttaatcgacgggtgtcgtttatttggagtttttgcgacacgcggatcgatgacgtggcttgcggatgtgtttggtttgtgtgatgaggatcgttg |
517 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
34748316 |
attggttcatcgacgggtgtcgtttatttggagtttttgcgacacgcggatcgatgacgtggcttgtggatgtgtttggtttgtgtgatgaggatcgttg |
34748217 |
T |
|
| Q |
518 |
attttatggttatcgatggttgaaattgaatttcaaagaatcacacggatcggtgacgtggcgtgtagttatggaaagttgaaattgaatttgagaaaat |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34748216 |
attttatggttatcgatggttgaaattgaatttcaaagaatcacgcggatcggtgacgtggcgtgtagttatggaaagttgaaattgaatttgagaaaat |
34748117 |
T |
|
| Q |
618 |
ga--cgcggatcgattannnnnnnggagggagaaagtgaaaatgaaaatgaaaataaataaagg |
679 |
Q |
| |
|
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34748116 |
gacgcgcggatcgatta-ttttttggagggagaaagtgaaaatgaaaatgaaaataaataaagg |
34748054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 21 - 232
Target Start/End: Complemental strand, 24860504 - 24860293
Alignment:
| Q |
21 |
agacgctggaagggaagtttgcggatgaggagttcggtgctcttctggtacttacggatctcacggagagcgacggttcctggcctgaaacggtgaggtt |
120 |
Q |
| |
|
||||| ||||| |||||||| |||||||| || || ||||| || |||||||| ||||| || || || || |||||||| || | |||||||||||||| |
|
|
| T |
24860504 |
agacgttggaatggaagttttcggatgagaagctctgtgcttttttggtacttgcggatttcgcgaagtgcaacggttccgggacggaaacggtgaggtt |
24860405 |
T |
|
| Q |
121 |
tcttcactccaccggtggccggagcagatttgcgagcggcttttgtggcgagttgcttccttggagctttacctccggtggatttgcgagcggtttgctt |
220 |
Q |
| |
|
|||||||||| |||||||| ||||| ||||| || ||||||||||| || || ||||||||||| ||||| |||||||||||||||||||| |||||||| |
|
|
| T |
24860404 |
tcttcactccgccggtggctggagcggatttccgggcggcttttgttgctagctgcttccttggtgcttttcctccggtggatttgcgagctgtttgctt |
24860305 |
T |
|
| Q |
221 |
ggtacgtgccat |
232 |
Q |
| |
|
||||| ||||| |
|
|
| T |
24860304 |
tgtacgagccat |
24860293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 151; Significance: 2e-79; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 21 - 478
Target Start/End: Complemental strand, 26592126 - 26591665
Alignment:
| Q |
21 |
agacgctggaagggaagtttgcggatgaggagttcggtgctcttctggtacttacggatctcacggagagcgacggttcctggcctgaaacggtgaggtt |
120 |
Q |
| |
|
||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| || | |
|
|
| T |
26592126 |
agacgctggaaaggaagtttgcgaatgagaagttcggtgctcttctggtacttgcggatctcacggagtgcgacggttcctggcctgaaacggtgtggct |
26592027 |
T |
|
| Q |
121 |
tcttcactccaccggtggccggagcagatttgcgagcggcttttgtggcgagttgcttccttggagctttacctccggtggatttgcgagcggtttgctt |
220 |
Q |
| |
|
|||||||||| ||||| |||||||| ||||| |||||||||||||| ||||| ||||||||||| ||||| || |||||||| ||||| || |||||||| |
|
|
| T |
26592026 |
tcttcactccgccggtcgccggagcggatttccgagcggcttttgttgcgagctgcttccttggtgctttgccgccggtggacttgcgtgcagtttgctt |
26591927 |
T |
|
| Q |
221 |
ggtacgtgccatagatgctgaaa---aataactgagaagaacgttttcta--gcagaaaagcttgaaggttgttttggtgatttcagattgagag----- |
310 |
Q |
| |
|
||||||||||| |||||||| ||||||||| || ||| |||||| | | || || ||| ||||| ||||||| |||||||||| |
|
|
| T |
26591926 |
agtacgtgccat---tgctgaaagataataactga-aaaaactgtttctactggaaaatagtttg-ttattgttactgtgatttgagattgagagagtga |
26591832 |
T |
|
| Q |
311 |
tgatgaagaagaagggatgaaagaggtgagttatataatgatatgattttgtgcgggttttgaaatttgagaagagggtgagtggggtgtgattgtggcc |
410 |
Q |
| |
|
||||| | |||| |||||||| ||||||||||| | || ||||||||||| |||||||||||||| ||||||||||| |||| |||| ||||||| |
|
|
| T |
26591831 |
tgatgtggttgaagagatgaaaggggtgagttataaagtg--atgattttgtgaaggttttgaaatttgtgaagagggtgaatgggttgtgcctgtggcc |
26591734 |
T |
|
| Q |
411 |
gttgattattgg-ttaatcgacgggtgtcgtttatttggagtttttgcgacacgcggatcgatgacgtg |
478 |
Q |
| |
|
|||||||||||| |||||||||||||||||| | ||||||||| ||| |||| ||||||| ||||||| |
|
|
| T |
26591733 |
gttgattattggtttaatcgacgggtgtcgtgtgtttggagttgttgagacattcggatcggtgacgtg |
26591665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 27 - 232
Target Start/End: Original strand, 43479850 - 43480055
Alignment:
| Q |
27 |
tggaagggaagtttgcggatgaggagttcggtgctcttctggtacttacggatctcacggagagcgacggttcctggcctgaaacggtgaggtttcttca |
126 |
Q |
| |
|
||||| ||||| || | |||||| || ||||| |||||||| ||||| ||||||||||| ||||| || ||||| || | ||| | ||| || ||||||| |
|
|
| T |
43479850 |
tggaatggaagcttcctgatgagaagctcggtactcttctgatacttgcggatctcacgaagagcaacagttccaggacggaatctgtgtggcttcttca |
43479949 |
T |
|
| Q |
127 |
ctccaccggtggccggagcagatttgcgagcggcttttgtggcgagttgcttccttggagctttacctccggtggatttgcgagcggtttgcttggtacg |
226 |
Q |
| |
|
|||| |||||||||||||| ||||| ||||||||||| ||||||||||| |||||||||||||| || ||||||||||||||||||||||| |||||||| |
|
|
| T |
43479950 |
ctcctccggtggccggagctgatttccgagcggctttggtggcgagttgtttccttggagctttgccaccggtggatttgcgagcggtttgtttggtacg |
43480049 |
T |
|
| Q |
227 |
tgccat |
232 |
Q |
| |
|
||||| |
|
|
| T |
43480050 |
agccat |
43480055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 21 - 232
Target Start/End: Complemental strand, 38799453 - 38799242
Alignment:
| Q |
21 |
agacgctggaagggaagtttgcggatgaggagttcggtgctcttctggtacttacggatctcacggagagcgacggttcctggcctgaaacggtgaggtt |
120 |
Q |
| |
|
||||| ||||| |||||||| |||||||| || || ||||||||||| |||||||||||||| | | ||| || ||||| || ||||| | || || | |
|
|
| T |
38799453 |
agacgttggaatggaagtttacggatgagaagctcagtgctcttctgatacttacggatctctctcaaagcaacagttccaggtctgaatctatgtggct |
38799354 |
T |
|
| Q |
121 |
tcttcactccaccggtggccggagcagatttgcgagcggcttttgtggcgagttgcttccttggagctttacctccggtggatttgcgagcggtttgctt |
220 |
Q |
| |
|
|||||||||| ||||| |||||||| ||||| |||||||| || |||||||| ||||||| ||||| || || ||||||||||||||||| |||||||| |
|
|
| T |
38799353 |
tcttcactcctccggtcgccggagctgatttccgagcggccttggtggcgagctgcttccggggagccttgccgccggtggatttgcgagctgtttgctt |
38799254 |
T |
|
| Q |
221 |
ggtacgtgccat |
232 |
Q |
| |
|
|||||||||||| |
|
|
| T |
38799253 |
ggtacgtgccat |
38799242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 21 - 232
Target Start/End: Original strand, 38822064 - 38822275
Alignment:
| Q |
21 |
agacgctggaagggaagtttgcggatgaggagttcggtgctcttctggtacttacggatctcacggagagcgacggttcctggcctgaaacggtgaggtt |
120 |
Q |
| |
|
||||| ||||| |||||||| |||||||| || || ||||||||||| |||||||||||||| | | ||| || ||||| || ||||| | || || | |
|
|
| T |
38822064 |
agacgttggaatggaagtttacggatgagaagctcagtgctcttctgatacttacggatctctctcaaagcaacagttccaggtctgaatctatgtggct |
38822163 |
T |
|
| Q |
121 |
tcttcactccaccggtggccggagcagatttgcgagcggcttttgtggcgagttgcttccttggagctttacctccggtggatttgcgagcggtttgctt |
220 |
Q |
| |
|
|||||||||| ||||| |||||||| ||||| |||||||| || |||||||| ||||||| ||||| || || ||||||||||||||||| |||||||| |
|
|
| T |
38822164 |
tcttcactcctccggtcgccggagctgatttccgagcggccttggtggcgagctgcttccggggagccttgccgccggtggatttgcgagctgtttgctt |
38822263 |
T |
|
| Q |
221 |
ggtacgtgccat |
232 |
Q |
| |
|
|||||||||||| |
|
|
| T |
38822264 |
ggtacgtgccat |
38822275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 21 - 232
Target Start/End: Complemental strand, 25865658 - 25865447
Alignment:
| Q |
21 |
agacgctggaagggaagtttgcggatgaggagttcggtgctcttctggtacttacggatctcacggagagcgacggttcctggcctgaaacggtgaggtt |
120 |
Q |
| |
|
||||||||||| ||||| || ||||| | || || || |||||||| ||||||||||||||||| ||||| |||||||| || | |||| ||||| | |
|
|
| T |
25865658 |
agacgctggaatggaagcttacggatcaaaagctcagtactcttctgatacttacggatctcacgaagagcaacggttccaggacgataacgatgaggct |
25865559 |
T |
|
| Q |
121 |
tcttcactccaccggtggccggagcagatttgcgagcggcttttgtggcgagttgcttccttggagctttacctccggtggatttgcgagcggtttgctt |
220 |
Q |
| |
|
|||||||||| ||||||| ||||||||||| | || ||||| || ||||||||||||||||| || || || ||||||||||||||||| |||||||| |
|
|
| T |
25865558 |
tcttcactccgccggtggttggagcagatttccttgcagctttggtcgcgagttgcttccttggtgccttgccgccggtggatttgcgagcagtttgctt |
25865459 |
T |
|
| Q |
221 |
ggtacgtgccat |
232 |
Q |
| |
|
||||| ||||| |
|
|
| T |
25865458 |
cgtacgagccat |
25865447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 60 - 232
Target Start/End: Complemental strand, 41943863 - 41943691
Alignment:
| Q |
60 |
ctcttctggtacttacggatctcacggagagcgacggttcctggcctgaaacggtgaggtttcttcactccaccggtggccggagcagatttgcgagcgg |
159 |
Q |
| |
|
||||||||||| |||||||||||||| || || ||||| || || | | || ||||||||||| ||||||||||| | ||||||||||||||||| | |
|
|
| T |
41943863 |
ctcttctggtatttacggatctcacgaagtgcaacggtaccaggacgatagcgatgaggtttcttgactccaccggttgtaggagcagatttgcgagcag |
41943764 |
T |
|
| Q |
160 |
cttttgtggcgagttgcttccttggagctttacctccggtggatttgcgagcggtttgcttggtacgtgccat |
232 |
Q |
| |
|
| || ||||| ||||||||||||||||| || || ||||||||||||||||| |||||||| ||||| ||||| |
|
|
| T |
41943763 |
ccttggtggccagttgcttccttggagccttgccaccggtggatttgcgagcagtttgcttagtacgagccat |
41943691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 2e-44; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 45 - 232
Target Start/End: Complemental strand, 13576282 - 13576095
Alignment:
| Q |
45 |
atgaggagttcggtgctcttctggtacttacggatctcacggagagcgacggttcctggcctgaaacggtgaggtttcttcactccaccggtggccggag |
144 |
Q |
| |
|
||||| || |||||||||||||| ||||| ||||| ||||| |||||||||||||| || | |||||| || || ||||||||||| ||||||||||||| |
|
|
| T |
13576282 |
atgagaagctcggtgctcttctgatacttgcggatttcacgaagagcgacggttccaggacggaaacgatgtggcttcttcactcctccggtggccggag |
13576183 |
T |
|
| Q |
145 |
cagatttgcgagcggcttttgtggcgagttgcttccttggagctttacctccggtggatttgcgagcggtttgcttggtacgtgccat |
232 |
Q |
| |
|
| ||||| ||||||||||||||||||||||| || | ||| ||||| || |||||||||||||| || ||||| |||||||||||||| |
|
|
| T |
13576182 |
cggatttccgagcggcttttgtggcgagttgtttgcgtggtgcttttccgccggtggatttgcgggctgtttgtttggtacgtgccat |
13576095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 21 - 232
Target Start/End: Original strand, 34579084 - 34579295
Alignment:
| Q |
21 |
agacgctggaagggaagtttgcggatgaggagttcggtgctcttctggtacttacggatctcacggagagcgacggttcctggcctgaaacggtgaggtt |
120 |
Q |
| |
|
||||||||||| |||||||| || || | |||||||| | |||||| |||||||| |||||||| ||||| || ||||| || | |||| ||||| | |
|
|
| T |
34579084 |
agacgctggaatggaagtttacgaatcaaaagttcggtacccttctgatacttacgtatctcacgaagagcaactgttccaggacgataacgatgaggct |
34579183 |
T |
|
| Q |
121 |
tcttcactccaccggtggccggagcagatttgcgagcggcttttgtggcgagttgcttccttggagctttacctccggtggatttgcgagcggtttgctt |
220 |
Q |
| |
|
|||| | ||| ||||| | || ||||||| ||||| || ||||||||||||||||||||||| || ||||| ||||||| ||||||| |||||||| |
|
|
| T |
34579184 |
tcttgattccgccggttgttggcacagattttcgagcagcctttgtggcgagttgcttccttggtgccttaccaagggtggatctgcgagcagtttgctt |
34579283 |
T |
|
| Q |
221 |
ggtacgtgccat |
232 |
Q |
| |
|
||||| ||||| |
|
|
| T |
34579284 |
tgtacgcgccat |
34579295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 21 - 232
Target Start/End: Original strand, 34584833 - 34585044
Alignment:
| Q |
21 |
agacgctggaagggaagtttgcggatgaggagttcggtgctcttctggtacttacggatctcacggagagcgacggttcctggcctgaaacggtgaggtt |
120 |
Q |
| |
|
||||||||||| |||||||| || || | |||||||| | |||||| |||||||| |||||||| ||||| || ||||| || | |||| ||||| | |
|
|
| T |
34584833 |
agacgctggaatggaagtttacgaatcaaaagttcggtacccttctgatacttacgtatctcacgaagagcaactgttccaggacgataacgatgaggct |
34584932 |
T |
|
| Q |
121 |
tcttcactccaccggtggccggagcagatttgcgagcggcttttgtggcgagttgcttccttggagctttacctccggtggatttgcgagcggtttgctt |
220 |
Q |
| |
|
|||| | ||| ||||| | || ||||||| ||||| || ||||||||||||||||||||||| || ||||| ||||||| ||||||| |||||||| |
|
|
| T |
34584933 |
tcttgattccgccggttgttggcacagattttcgagcagcctttgtggcgagttgcttccttggtgccttaccaagggtggatctgcgagcagtttgctt |
34585032 |
T |
|
| Q |
221 |
ggtacgtgccat |
232 |
Q |
| |
|
||||| ||||| |
|
|
| T |
34585033 |
tgtacgcgccat |
34585044 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 232
Target Start/End: Original strand, 34571787 - 34571857
Alignment:
| Q |
162 |
tttgtggcgagttgcttccttggagctttacctccggtggatttgcgagcggtttgcttggtacgtgccat |
232 |
Q |
| |
|
||||||||||||| ||||||||| || || || ||||||||||||||||| |||||||| ||||| ||||| |
|
|
| T |
34571787 |
tttgtggcgagttccttccttggtgccttgccaccggtggatttgcgagcagtttgctttgtacgcgccat |
34571857 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 34571616 - 34571695
Alignment:
| Q |
21 |
agacgctggaagggaagtttgcggatgaggagttcggtgctcttctggtacttacggatctcacggagagcgacggttcc |
100 |
Q |
| |
|
||||||||||| |||||||| ||||| | |||||||| |||||||| |||||||| |||||||| ||||| || ||||| |
|
|
| T |
34571616 |
agacgctggaatggaagtttacggatcaaaagttcggtactcttctgatacttacgtatctcacgaagagcaactgttcc |
34571695 |
T |
|
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Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 54 - 232
Target Start/End: Complemental strand, 12531417 - 12531239
Alignment:
| Q |
54 |
tcggtgctcttctggtacttacggatctcacggagagcgacggttcctggcctgaaacggtgaggtttcttcactccaccggtggccggagcagatttgc |
153 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| || || || |||||||| | ||| | ||| || ||||| ||||| ||||| |||||||||||||| | |
|
|
| T |
12531417 |
tcggtgctcttctggtacttgcggatctcacgaagtgcaacagttcctggacggaatctgtgtggcttcttgactcctccggttgccggagcagatttcc |
12531318 |
T |
|
| Q |
154 |
gagcggcttttgtggcgagttgcttccttggagctttacctccggtggatttgcgagcggtttgcttggtacgtgccat |
232 |
Q |
| |
|
| || ||||| ||||| || ||||||||||| ||||| || ||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
12531317 |
gggcagctttagtggcaagctgcttccttggtgcttttccgccggtggatttgcgagctgtttgcttggtacgagccat |
12531239 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 54 - 232
Target Start/End: Original strand, 12547202 - 12547380
Alignment:
| Q |
54 |
tcggtgctcttctggtacttacggatctcacggagagcgacggttcctggcctgaaacggtgaggtttcttcactccaccggtggccggagcagatttgc |
153 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| || || || |||||||| | ||| | ||| || ||||| ||||| ||||| |||||||||||||| | |
|
|
| T |
12547202 |
tcggtgctcttctggtacttgcggatctcacgaagtgcaacagttcctggacggaatctgtgtggcttcttgactcctccggttgccggagcagatttcc |
12547301 |
T |
|
| Q |
154 |
gagcggcttttgtggcgagttgcttccttggagctttacctccggtggatttgcgagcggtttgcttggtacgtgccat |
232 |
Q |
| |
|
| || ||||| ||||| || ||||||||||| ||||| || ||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
12547302 |
gggcagctttagtggcaagctgcttccttggtgcttttccgccggtggatttgcgagctgtttgcttggtacgagccat |
12547380 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 71 - 231
Target Start/End: Original strand, 9866878 - 9867038
Alignment:
| Q |
71 |
cttacggatctcacggagagcgacggttcctggcctgaaacggtgaggtttcttcactccaccggtggccggagcagatttgcgagcggcttttgtggcg |
170 |
Q |
| |
|
||||||||||||||| || || |||||||| || | ||||||||| || ||||||||||| || || |||||||| ||||| ||||| ||||||||||| |
|
|
| T |
9866878 |
cttacggatctcacgaagcgcaacggttccaggacggaaacggtgtggcttcttcactcctcccgttgccggagctgatttccgagcagcttttgtggcc |
9866977 |
T |
|
| Q |
171 |
agttgcttccttggagctttacctccggtggatttgcgagcggtttgcttggtacgtgcca |
231 |
Q |
| |
|
|| | ||| | ||| |||||||| ||||||||||||||||| ||||| ||||||| ||||| |
|
|
| T |
9866978 |
agcttctttcatggtgctttaccgccggtggatttgcgagccgtttgtttggtacatgcca |
9867038 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 57 - 151
Target Start/End: Complemental strand, 9869937 - 9869843
Alignment:
| Q |
57 |
gtgctcttctggtacttacggatctcacggagagcgacggttcctggcctgaaacggtgaggtttcttcactccaccggtggccggagcagattt |
151 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||| | | ||||| ||| |||||||||||| | ||||| ||| |||| ||||| |
|
|
| T |
9869937 |
gtgctcttctggtacttacggatctcacgaagagcaacggttccatgacagaaacagtgtggtttcttcactgccccggttgccagagctgattt |
9869843 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0197 (Bit Score: 76; Significance: 9e-35; HSPs: 1)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 57 - 232
Target Start/End: Complemental strand, 30934 - 30759
Alignment:
| Q |
57 |
gtgctcttctggtacttacggatctcacggagagcgacggttcctggcctgaaacggtgaggtttcttcactccaccggtggccggagcagatttgcgag |
156 |
Q |
| |
|
||||||||||||||||| ||||| ||||| || || |||||||| || | ||||||||| || ||||||||||| ||||| |||||||| ||||| || | |
|
|
| T |
30934 |
gtgctcttctggtacttgcggatttcacgaagcgccacggttccgggacggaaacggtgtggcttcttcactcctccggtcgccggagctgatttccgtg |
30835 |
T |
|
| Q |
157 |
cggcttttgtggcgagttgcttccttggagctttacctccggtggatttgcgagcggtttgcttggtacgtgccat |
232 |
Q |
| |
|
||||||| ||||||||||| || | ||| ||||| || |||||||||||||| || ||||| |||||||||||||| |
|
|
| T |
30834 |
cggctttggtggcgagttgtttgcgtggggcttttccgccggtggatttgcgtgctgtttgtttggtacgtgccat |
30759 |
T |
|
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Target: chr7 (Bit Score: 76; Significance: 9e-35; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 57 - 232
Target Start/End: Complemental strand, 21317496 - 21317321
Alignment:
| Q |
57 |
gtgctcttctggtacttacggatctcacggagagcgacggttcctggcctgaaacggtgaggtttcttcactccaccggtggccggagcagatttgcgag |
156 |
Q |
| |
|
||||||||||||||||| ||||| ||||| || || |||||||| || | ||||||||| || ||||||||||| ||||| |||||||| ||||| || | |
|
|
| T |
21317496 |
gtgctcttctggtacttgcggatttcacgaagcgccacggttccgggacggaaacggtgtggcttcttcactcctccggtcgccggagctgatttccgtg |
21317397 |
T |
|
| Q |
157 |
cggcttttgtggcgagttgcttccttggagctttacctccggtggatttgcgagcggtttgcttggtacgtgccat |
232 |
Q |
| |
|
||||||| ||||||||||| || | ||| ||||| || |||||||||||||| || ||||| |||||||||||||| |
|
|
| T |
21317396 |
cggctttggtggcgagttgtttgcgtggggcttttccgccggtggatttgcgtgctgtttgtttggtacgtgccat |
21317321 |
T |
|
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Target: chr7; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 27 - 232
Target Start/End: Original strand, 3930137 - 3930342
Alignment:
| Q |
27 |
tggaagggaagtttgcggatgaggagttcggtgctcttctggtacttacggatctcacggagagcgacggttcctggcctgaaacggtgaggtttcttca |
126 |
Q |
| |
|
||||| |||||||| | ||||| ||||| ||||||||||| ||||| ||||||||||| || ||||| |||||||| | ||| | ||| |||||||| | |
|
|
| T |
3930137 |
tggaatggaagtttcctaatgagaagttcagtgctcttctgatacttgcggatctcacgaagtgcgactgttcctggacggaatctgtgtggtttcttta |
3930236 |
T |
|
| Q |
127 |
ctccaccggtggccggagcagatttgcgagcggcttttgtggcgagttgcttccttggagctttacctccggtggatttgcgagcggtttgcttggtacg |
226 |
Q |
| |
|
| |||||||| ||||| || ||||| | |||||||| ||||||||||| |||| ||| ||||| |||||||||||||| || || ||||| |||||||| |
|
|
| T |
3930237 |
caccaccggttgccggtgctgattttcttgcggctttggtggcgagttgtttccgtggggcttttcctccggtggattttcgtgctgtttgtttggtacg |
3930336 |
T |
|
| Q |
227 |
tgccat |
232 |
Q |
| |
|
|||||| |
|
|
| T |
3930337 |
tgccat |
3930342 |
T |
|
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Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 165 - 232
Target Start/End: Original strand, 7594910 - 7594977
Alignment:
| Q |
165 |
gtggcgagttgcttccttggagctttacctccggtggatttgcgagcggtttgcttggtacgtgccat |
232 |
Q |
| |
|
|||||||| |||||||||||||| ||||| ||||| || ||||||||||||||||||||||| ||||| |
|
|
| T |
7594910 |
gtggcgagctgcttccttggagccttaccaccggtagacttgcgagcggtttgcttggtacgagccat |
7594977 |
T |
|
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