View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16994_low_3 (Length: 574)
Name: NF16994_low_3
Description: NF16994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16994_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 132 - 404
Target Start/End: Complemental strand, 10503305 - 10503033
Alignment:
| Q |
132 |
aactttagttaaggctgcaaagaagacgaggatnnnnnnnttggagagaaattcagaaaatggcgagtcttttgatacattttggattggtgaaactaaa |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10503305 |
aactttagttaaggctgcaaagaagacgaggataaaaaaattggagagaaattcagaaaatggcgagtcttttgatacattttggattggtgaaactaaa |
10503206 |
T |
|
| Q |
232 |
ttgcctttggctccaacgattagaacacaacctgttcttgagaatgattgatgatgtttttcattattaatgttagttagtggtggttcaatttcttact |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
10503205 |
ttgcctttggctccaacgattagaacacaacctgttcttgagaatgattgatgatgtttttcattattaatgttagttaatggtggttcaatttcttact |
10503106 |
T |
|
| Q |
332 |
ttgttttgtagtgttagcttcatgcaaattatgaatgagtgctttaattattgatgtatgttttgagcttgat |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10503105 |
ttgttttgtagtgttagcttcatgcaaattatgaatgagtgctttaattattgatgtatgttttgagcttgat |
10503033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 428 - 560
Target Start/End: Complemental strand, 10502989 - 10502857
Alignment:
| Q |
428 |
caattttgactctataatatccacgatgatatttgtacacctttaacttacatacactcattcaacgtctaattttctttctatatttcttttttctatc |
527 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10502989 |
caattttgactctataatatcgacgatgatatttgtacacctttaatttacatacactcattcaacgtctaattttctctctatatttcttttttctatc |
10502890 |
T |
|
| Q |
528 |
acatcactaacatatcacattactttatttatt |
560 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
10502889 |
acatcactaacatatcacattactttatttatt |
10502857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 10503436 - 10503368
Alignment:
| Q |
1 |
cactatactgttgtggttccaattccaaaagaattatacaacaagagacaaagtaagagatttaccata |
69 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
10503436 |
cactatactcttgtggttccaattccaaaagaattatacaataagagacaaagtaagagatttaccata |
10503368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University