View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16994_low_4 (Length: 502)

Name: NF16994_low_4
Description: NF16994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16994_low_4
NF16994_low_4
[»] chr2 (1 HSPs)
chr2 (15-492)||(14784941-14785421)
[»] chr7 (5 HSPs)
chr7 (15-485)||(48898569-48899049)
chr7 (115-230)||(34184079-34184194)
chr7 (115-230)||(34204668-34204783)
chr7 (291-353)||(34184264-34184326)
chr7 (291-353)||(34204853-34204915)
[»] chr5 (3 HSPs)
chr5 (132-492)||(31116304-31116673)
chr5 (15-357)||(38061701-38062053)
chr5 (16-69)||(31116209-31116262)
[»] chr3 (8 HSPs)
chr3 (15-58)||(25661726-25661769)
chr3 (15-58)||(25668131-25668174)
chr3 (15-58)||(25674536-25674579)
chr3 (15-58)||(25681210-25681253)
chr3 (15-58)||(25689514-25689557)
chr3 (130-230)||(25660770-25660870)
chr3 (130-230)||(25667175-25667275)
chr3 (130-230)||(25673580-25673680)


Alignment Details
Target: chr2 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 15 - 492
Target Start/End: Complemental strand, 14785421 - 14784941
Alignment:
Q  15 cataggcacgttgaattgtgaaatccctagtgttggttcctccctaaccaatattttcatacccatttgtttctataggtgtagg-atagcaagaaccta 113  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||| |||||||||||||     
T  14785421 cataggcactttgaattatgaaatccctagtgttggttcctccctagccaatattttcatatccatttgtttctatacgtgtagggatagcaagaacctg 14785322  T
Q  114 taaagcaaatgtacatagtaagttagaagtaaggaacttataatcccactcttctgaggaggttaccacgtccctcacatatagagttgtgtcaatacta 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||    
T  14785321 taaagcaaatgtacatagtaagttagaagtaaggaacttataatcccactcttcttaggaggttaccacatccctcgcatatagagttgtgtcaatacta 14785222  T
Q  214 gtttgattagtgatggaagttccactagaagtttatttatccacccaaaaattaatattgttaccattgctcagccaccacacaatattttgctgaaatt 313  Q
    ||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  14785221 gtttgatcagtgatggaagttccagtagaagtttatttatccatccaaaaattaatattgttatcattgctcagctaccacacaatattttgctgaaatt 14785122  T
Q  314 gatcccagatacctgttaaagctttccacaaag--gagaatcatataattgagaatctatggttactctaagatctttattactcccacacttactataa 411  Q
    |||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  14785121 gatcccagatacctgttaaagctttccacaaaggagagaatcatatgattgagaatctatggtttctctaagatctttattactcccacacttactataa 14785022  T
Q  412 agaatcttgcaccaaaggtcatcaagtttggttataacattccaaagcatcttcgtaagaaaagcgtcattcatctgatga 492  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14785021 agaaccttgcaccaaaggtcatcaagtttggttataacattccaaagcatcttcgtaagaaaagcatcattcatctgatga 14784941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 193; Significance: 1e-104; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 15 - 485
Target Start/End: Original strand, 48898569 - 48899049
Alignment:
Q  15 cataggcacgttgaattgtgaaatccctagtgttggttcctccctaaccaatattttcatacccatttgtttctataggtgtagg-atagcaagaaccta 113  Q
    ||||| ||| |||||||||||||||||||||||||||||||||| |||||||||| |||   ||||  || ||| |||||| ||| |||||||||||||     
T  48898569 catagacactttgaattgtgaaatccctagtgttggttcctccccaaccaatattgtcaagtccatcagtgtctttaggtgcagggatagcaagaacctg 48898668  T
Q  114 taaagcaaatgtacatagtaagttagaagtaaggaacttataatcccactcttctgaggaggttaccacgtccctcacatatagagttgtgtcaatacta 213  Q
    ||||||||| ||| |  ||||||||||||||||||| ||| ||||||||||| || ||| ||||||||||||||||||||  ||||||||||||||| ||    
T  48898669 taaagcaaaggtagacggtaagttagaagtaaggaaattaaaatcccactctccttagggggttaccacgtccctcacatggagagttgtgtcaataata 48898768  T
Q  214 gtttgattagtgatgga---------agttccactagaagtttatttatccacccaaaaattaatattgttaccattgctcagccaccacacaatatttt 304  Q
     |||||||||| |||||         ||||||||||| ||   ||||||||| ||||||||||||||| ||||||| || || |  ||||||||||||||    
T  48898769 ttttgattagtaatggacataagagaagttccactaggagcccatttatccatccaaaaattaatattattaccatcgcccaactgccacacaatatttt 48898868  T
Q  305 gctgaaattgatcccagatacctgttaaagctttccacaaaggagaatcatataattgagaatctatggttactctaagatctttattactcccacactt 404  Q
    | |||||||| |||||   |||||||||||||||||| ||||||||||||||| ||| ||||||||||| ||| |||||||||||||| |||||| ||||    
T  48898869 gttgaaattgttcccaataacctgttaaagctttccataaaggagaatcatatgatttagaatctatggctaccctaagatctttattcctcccatactt 48898968  T
Q  405 actataaagaatcttgcaccaaaggtcatcaagtttggttataacattccaaagcatcttcgtaagaaaagcgtcattcat 485  Q
    |||||| |||| ||| ||||| ||||||| | | ||||| || | |||||||| ||||||| |||||||||||||||||||    
T  48898969 actatagagaaccttacaccataggtcattaggcttggtgattagattccaaaacatcttcataagaaaagcgtcattcat 48899049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 230
Target Start/End: Original strand, 34184079 - 34184194
Alignment:
Q  115 aaagcaaatgtacatagtaagttagaagtaaggaacttataatcccactcttctgaggaggttaccacgtccctcacatatagagttgtgtcaatactag 214  Q
    |||||||| ||| || |||||||||||||||  || |||||||| || |||  ||| | ||||||||| ||| | ||||| || |||||||||| |  |     
T  34184079 aaagcaaaggtaaatggtaagttagaagtaataaaattataatctcaatctcttgaaggggttaccacatccttaacatagagggttgtgtcaacataat 34184178  T
Q  215 tttgattagtgatgga 230  Q
    ||||||||||||||||    
T  34184179 tttgattagtgatgga 34184194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 230
Target Start/End: Original strand, 34204668 - 34204783
Alignment:
Q  115 aaagcaaatgtacatagtaagttagaagtaaggaacttataatcccactcttctgaggaggttaccacgtccctcacatatagagttgtgtcaatactag 214  Q
    |||||||| ||| || |||||||||||||||  || |||||||| || |||  ||| | ||||||||| ||| | ||||| || |||||||||| |  |     
T  34204668 aaagcaaaggtaaatggtaagttagaagtaataaaattataatctcaatctcttgaaggggttaccacatccttaacatagagggttgtgtcaacataat 34204767  T
Q  215 tttgattagtgatgga 230  Q
    ||||||||||||||||    
T  34204768 tttgattagtgatgga 34204783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 353
Target Start/End: Original strand, 34184264 - 34184326
Alignment:
Q  291 ccacacaatattttgctgaaattgatcccagatacctgttaaagctttccacaaaggagaatc 353  Q
    ||||||||||||||||||||| |  ||||| || |||  ||| ||||||||||||||||||||    
T  34184264 ccacacaatattttgctgaaaattttcccaaatgcctaataatgctttccacaaaggagaatc 34184326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 353
Target Start/End: Original strand, 34204853 - 34204915
Alignment:
Q  291 ccacacaatattttgctgaaattgatcccagatacctgttaaagctttccacaaaggagaatc 353  Q
    ||||||||||||||||||||| |  ||||| || |||  ||| ||||||||||||||||||||    
T  34204853 ccacacaatattttgctgaaaattttcccaaatgcctaataatgctttccacaaaggagaatc 34204915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 158; Significance: 7e-84; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 132 - 492
Target Start/End: Original strand, 31116304 - 31116673
Alignment:
Q  132 taagttagaagtaaggaacttataatcccactcttctgaggaggttaccacgtccctcacatatagagttgtgtcaatactagtttgattagtgatg--- 228  Q
    ||||||||| |||||||| ||||| ||||||||| ||||| ||| |||||||||||||||||  ||||| |||| |||||| |||||||||||||||       
T  31116304 taagttagaggtaaggaaattatagtcccactctcctgagaaggctaccacgtccctcacatggagagtcgtgtaaatacttgtttgattagtgatgaac 31116403  T
Q  229 ------gaagttccactagaagtttatttatccacccaaaaattaatattgttaccattgctcagccaccacacaatattttgctgaaattgatcccaga 322  Q
          ||||||||||| | ||   ||||||| | |||||| |||||||||||||||||||  |||  ||||||||||||||||| ||||| |||||| |    
T  31116404 ataagagaagttccactgggagcacatttatcgatccaaaagttaatattgttaccattgccaagctgccacacaatattttgcttaaattaatcccaaa 31116503  T
Q  323 tacctgttaaagctttccacaaaggagaatcatataattgagaatctatggttactctaagatctttattactcccacacttactataaagaatcttgca 422  Q
    ||| ||||||||||||||||||||| ||||||||| ||| ||||||||||||||| |||||||||||||| |||||| ||||||||||||||| ||| ||    
T  31116504 tacttgttaaagctttccacaaaggggaatcatatgatttagaatctatggttaccctaagatctttattcctcccatacttactataaagaagcttaca 31116603  T
Q  423 ccaaaggtcatcaagtttggttataacattccaaagcatcttcgtaagaaaagcgtcattcatctgatga 492  Q
    ||| ||||||||||| ||||| || | |||| ||||||||||| |||||||| |||| ||||| ||||||    
T  31116604 ccataggtcatcaagcttggtgatcagattcaaaagcatcttcataagaaaaacgtctttcatatgatga 31116673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 15 - 357
Target Start/End: Complemental strand, 38062053 - 38061701
Alignment:
Q  15 cataggcacgttgaattgtgaaatccctagtgttggttcctccctaaccaatattttcatacccatttgtttctataggtgtagg-atagcaagaaccta 113  Q
    ||||| ||| || ||||||||||||||||||||||||||||||| |||||||||| |||   ||||  || ||| |||||| ||| |||| ||||||||     
T  38062053 catagacactttaaattgtgaaatccctagtgttggttcctccccaaccaatattgtcaagtccatcagtgtctttaggtgcagggatagaaagaacctg 38061954  T
Q  114 taaagcaaatgtacatagtaagttagaagtaaggaacttataatcccactcttctgaggaggttaccacgtccctcacatatagagttgtgtcaatacta 213  Q
    ||||||||| ||| |  ||||||||||||||||||| ||| ||||||||||| |||||| |||| ||||||| |||||||  |||||| |||||||| ||    
T  38061953 taaagcaaaggtagacggtaagttagaagtaaggaaattaaaatcccactctcctgagggggttgccacgtcactcacatggagagttatgtcaataata 38061854  T
Q  214 gtttgattagtgatg---------gaagttccactagaagtttatttatccacccaaaaattaatattgttaccattgctcagccaccacacaatatttt 304  Q
    ||||||||||| |||         ||||||||||||| ||   |||||||||  |||||||||||||| ||||||| || || |  ||||||||||||||    
T  38061853 gtttgattagtaatggacataagagaagttccactaggagcccatttatccattcaaaaattaatattattaccatcgcccaactgccacacaatatttt 38061754  T
Q  305 gctgaaattgatcccagatacctgttaaagctttccacaaaggagaatcatat 357  Q
    |||||||| | ||||| |||| ||||||||||||||| |||||||||||||||    
T  38061753 gctgaaatcgttcccaaatacatgttaaagctttccataaaggagaatcatat 38061701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 31116209 - 31116262
Alignment:
Q  16 ataggcacgttgaattgtgaaatccctagtgttggttcctccctaaccaatatt 69  Q
    |||||||| |||||||||||||||||||||||||||||| ||  ||||||||||    
T  31116209 ataggcactttgaattgtgaaatccctagtgttggttccaccgcaaccaatatt 31116262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 25661769 - 25661726
Alignment:
Q  15 cataggcacgttgaattgtgaaatccctagtgttggttcctccc 58  Q
    ||||||||| |||||||||||| | |||||||||||||||||||    
T  25661769 cataggcactttgaattgtgaatttcctagtgttggttcctccc 25661726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 25668174 - 25668131
Alignment:
Q  15 cataggcacgttgaattgtgaaatccctagtgttggttcctccc 58  Q
    ||||||||| |||||||||||| | |||||||||||||||||||    
T  25668174 cataggcactttgaattgtgaatttcctagtgttggttcctccc 25668131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 25674579 - 25674536
Alignment:
Q  15 cataggcacgttgaattgtgaaatccctagtgttggttcctccc 58  Q
    ||||||||| |||||||||||| | |||||||||||||||||||    
T  25674579 cataggcactttgaattgtgaatttcctagtgttggttcctccc 25674536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 25681253 - 25681210
Alignment:
Q  15 cataggcacgttgaattgtgaaatccctagtgttggttcctccc 58  Q
    ||||||||| |||||||||||| | |||||||||||||||||||    
T  25681253 cataggcactttgaattgtgaatttcctagtgttggttcctccc 25681210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 25689557 - 25689514
Alignment:
Q  15 cataggcacgttgaattgtgaaatccctagtgttggttcctccc 58  Q
    ||||||||| |||||||||||| | |||||||||||||||||||    
T  25689557 cataggcactttgaattgtgaatttcctagtgttggttcctccc 25689514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 230
Target Start/End: Complemental strand, 25660870 - 25660770
Alignment:
Q  130 agtaagttagaagtaaggaacttataatcccactcttctgaggaggttaccacgtccctcacatatagagttgtgtcaatactagtttgattagtgatgg 229  Q
    ||||| ||||||||||  || ||||||||||| ||| |||| | ||||||||| ||| | ||| | |  |||||||||||| | || |||||||||||||    
T  25660870 agtaacttagaagtaataaaattataatcccaatctcctgaaggggttaccacatccttaacagaaaaggttgtgtcaatatttgtctgattagtgatgg 25660771  T
Q  230 a 230  Q
    |    
T  25660770 a 25660770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 230
Target Start/End: Complemental strand, 25667275 - 25667175
Alignment:
Q  130 agtaagttagaagtaaggaacttataatcccactcttctgaggaggttaccacgtccctcacatatagagttgtgtcaatactagtttgattagtgatgg 229  Q
    ||||| ||||||||||  || ||||||||||| ||| |||| | ||||||||| ||| | ||| | |  |||||||||||| | || |||||||||||||    
T  25667275 agtaacttagaagtaataaaattataatcccaatctcctgaaggggttaccacatccttaacagaaaaggttgtgtcaatatttgtctgattagtgatgg 25667176  T
Q  230 a 230  Q
    |    
T  25667175 a 25667175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 230
Target Start/End: Complemental strand, 25673680 - 25673580
Alignment:
Q  130 agtaagttagaagtaaggaacttataatcccactcttctgaggaggttaccacgtccctcacatatagagttgtgtcaatactagtttgattagtgatgg 229  Q
    ||||| ||||||||||  || ||||||||||| ||| |||| | ||||||||| ||| | ||| | |  |||||||||||| | || |||||||||||||    
T  25673680 agtaacttagaagtaataaaattataatcccaatctcctgaaggggttaccacatccttaacagaaaaggttgtgtcaatatttgtctgattagtgatgg 25673581  T
Q  230 a 230  Q
    |    
T  25673580 a 25673580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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