View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16994_low_6 (Length: 461)

Name: NF16994_low_6
Description: NF16994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16994_low_6
NF16994_low_6
[»] chr1 (5 HSPs)
chr1 (27-316)||(50005451-50005740)
chr1 (393-461)||(50005270-50005338)
chr1 (245-302)||(13193207-13193264)
chr1 (393-453)||(11923768-11923828)
chr1 (393-461)||(28260297-28260365)
[»] chr8 (17 HSPs)
chr8 (192-303)||(16848324-16848435)
chr8 (394-461)||(15081449-15081516)
chr8 (394-461)||(38082230-38082299)
chr8 (399-459)||(10404861-10404922)
chr8 (182-295)||(38082459-38082572)
chr8 (393-449)||(2262622-2262678)
chr8 (245-301)||(12310514-12310570)
chr8 (268-306)||(2262435-2262473)
chr8 (397-453)||(12310743-12310799)
chr8 (244-296)||(28856183-28856235)
chr8 (394-461)||(9295212-9295279)
chr8 (398-452)||(18180837-18180892)
chr8 (261-314)||(15081241-15081294)
chr8 (395-448)||(26150567-26150620)
chr8 (245-302)||(29019491-29019548)
chr8 (393-449)||(37490870-37490926)
chr8 (245-301)||(37491096-37491152)
[»] scaffold0251 (2 HSPs)
scaffold0251 (190-295)||(8494-8599)
scaffold0251 (400-450)||(8311-8361)
[»] chr6 (9 HSPs)
chr6 (393-453)||(27142628-27142688)
chr6 (192-303)||(2339435-2339546)
chr6 (189-295)||(5038792-5038898)
chr6 (393-453)||(8568741-8568801)
chr6 (187-314)||(19474997-19475124)
chr6 (199-295)||(10779513-10779609)
chr6 (395-449)||(2939848-2939903)
chr6 (395-448)||(3565615-3565667)
chr6 (282-314)||(19232010-19232042)
[»] chr4 (8 HSPs)
chr4 (180-286)||(24414331-24414437)
chr4 (200-314)||(15634318-15634431)
chr4 (393-458)||(15634539-15634606)
chr4 (398-461)||(54239489-54239552)
chr4 (205-295)||(54239216-54239306)
chr4 (395-452)||(2053162-2053219)
chr4 (398-452)||(13085246-13085301)
chr4 (398-461)||(18490390-18490453)
[»] chr3 (5 HSPs)
chr3 (179-287)||(27484707-27484815)
chr3 (187-302)||(1150799-1150914)
chr3 (394-457)||(1697148-1697211)
chr3 (416-461)||(33528308-33528353)
chr3 (395-448)||(19949880-19949933)
[»] chr7 (7 HSPs)
chr7 (182-315)||(16931136-16931269)
chr7 (182-315)||(16936519-16936652)
chr7 (395-452)||(5678366-5678423)
chr7 (395-452)||(5703418-5703475)
chr7 (205-302)||(721861-721960)
chr7 (203-290)||(22572741-22572828)
chr7 (406-452)||(13882840-13882886)
[»] chr5 (6 HSPs)
chr5 (395-461)||(15385098-15385164)
chr5 (395-461)||(35160871-35160936)
chr5 (413-453)||(7775315-7775355)
chr5 (204-295)||(35161117-35161208)
chr5 (181-289)||(14503723-14503831)
chr5 (393-461)||(36844474-36844542)
[»] chr2 (3 HSPs)
chr2 (395-452)||(18725748-18725805)
chr2 (245-302)||(5840761-5840818)
chr2 (393-461)||(5841182-5841249)


Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-150; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 27 - 316
Target Start/End: Complemental strand, 50005740 - 50005451
Alignment:
Q  27 ttttacttttatgcctattagctttattgtttcattgtttgcaaagtacatctttaagatgtaaggtttcgtttatcagtggaggtccaattcagaaact 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50005740 ttttacttttatgcctattagctttattgtttcattgtttgcaaagtacatctttaagatgtaaggtttcgtttatcagtggaggtccaattcagaaact 50005641  T
Q  127 atagtcattggtttctaaaagagatattgtcttgcataatgtaggtacgctatagtgatctaggtaaactggcggcgcgtatcgaagatgacgtggcgcg 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  50005640 atagtcattggtttctaaaagagatattgtcttgcataatgtaggtacgctatagtgatctaggtaaactggcggcgtgtatcgaagatgacgtggcgcg 50005541  T
Q  227 caagaatgaatcacttgaaatagtgtagatttgacatccgatgtcagattgactcgaattatacctttttggaaagctccagacctcata 316  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  50005540 caagaatgaatcacttgaaatagtgcagatttgatatccgatgtcagattgactcgaattataccttttcggaaagctcctgacctcata 50005451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 393 - 461
Target Start/End: Complemental strand, 50005338 - 50005270
Alignment:
Q  393 cctagtatttaaacagaactttcgtagcctaagagacactttttcattcaataaaattatcaagaactt 461  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  50005338 cctattatttaaacagaactttcgtagcctaagagacaccttttcattcaataaaattatcgagaactt 50005270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 13193264 - 13193207
Alignment:
Q  245 aatagtgtagatttgacatccgatgtcagattgactcgaattatacctttttggaaag 302  Q
    ||||||| ||||||||||| | |||||| |||||||||||||||||||||| ||||||    
T  13193264 aatagtgcagatttgacattcaatgtcatattgactcgaattataccttttcggaaag 13193207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 393 - 453
Target Start/End: Original strand, 11923768 - 11923828
Alignment:
Q  393 cctagtatttaaacagaactttcgtagcctaagagacactttttcattcaataaaattatc 453  Q
    |||||||||||| |  ||| |||||||||||||||||| |||| |||||||||||||||||    
T  11923768 cctagtatttaagctaaacattcgtagcctaagagacagttttccattcaataaaattatc 11923828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 393 - 461
Target Start/End: Complemental strand, 28260365 - 28260297
Alignment:
Q  393 cctagtatttaaacagaactttcgtagcctaagagacactttttcattcaataaaattatcaagaactt 461  Q
    ||||||||||||||  |||||||||||||||| || || |||| |||||||||||| |||| |||||||    
T  28260365 cctagtatttaaactaaactttcgtagcctaaaaggcagttttgcattcaataaaaatatcgagaactt 28260297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 192 - 303
Target Start/End: Original strand, 16848324 - 16848435
Alignment:
Q  192 aaactggcggcgcgtatcgaagatgacgtggcgcgcaagaatgaatcacttgaaatagtgtagatttgacatccgatgtcagattgactcgaattatacc 291  Q
    |||||||||||||||||||||||||| |||||||  ||||| || ||||||  ||||||| ||||||||||||||||||| |||||||  |||||||||     
T  16848324 aaactggcggcgcgtatcgaagatgaagtggcgcataagaaagactcacttagaatagtgcagatttgacatccgatgtcggattgacctgaattataca 16848423  T
Q  292 tttttggaaagc 303  Q
    |||| |||||||    
T  16848424 ttttcggaaagc 16848435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 394 - 461
Target Start/End: Original strand, 15081449 - 15081516
Alignment:
Q  394 ctagtatttaaacagaactttcgtagcctaagagacactttttcattcaataaaattatcaagaactt 461  Q
    |||||||||||||| ||||||||||| ||||||| || |||||| ||||||||||||||| |||||||    
T  15081449 ctagtatttaaacaaaactttcgtagtctaagaggcagtttttccttcaataaaattatcgagaactt 15081516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 394 - 461
Target Start/End: Complemental strand, 38082299 - 38082230
Alignment:
Q  394 ctagtatttaaacagaactttcgtagcctaagagacac-tttttcattcaat-aaaattatcaagaactt 461  Q
    |||||||||||||| ||||||||||||||||||| ||| ||||||||||||| ||||||||| |||||||    
T  38082299 ctagtatttaaacataactttcgtagcctaagaggcacttttttcattcaataaaaattatcgagaactt 38082230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 399 - 459
Target Start/End: Original strand, 10404861 - 10404922
Alignment:
Q  399 atttaaacagaactttcgtagcctaagagacac-tttttcattcaataaaattatcaagaac 459  Q
    |||||| |||| ||||||||||||||||| ||| |||||||||||||||||||||| |||||    
T  10404861 atttaaccagagctttcgtagcctaagaggcacttttttcattcaataaaattatcgagaac 10404922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 182 - 295
Target Start/End: Complemental strand, 38082572 - 38082459
Alignment:
Q  182 tgatctaggtaaactggcggcgcgtatcgaagatgacgtggcgcgcaagaatgaatcacttgaaatagtgtagatttgacatccgatgtcagattgactc 281  Q
    |||| ||| ||||||||| | | ||||||||||||| ||| |||||||||| || || ||   ||||||| ||||||| |||||| |||| || ||||||    
T  38082572 tgatatagataaactggcagtgtgtatcgaagatgaagtgacgcgcaagaaagactcgctcagaatagtgcagatttggcatccggtgtcggaatgactc 38082473  T
Q  282 gaattatacctttt 295  Q
    ||||||||| ||||    
T  38082472 gaattatacatttt 38082459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 393 - 449
Target Start/End: Original strand, 2262622 - 2262678
Alignment:
Q  393 cctagtatttaaacagaactttcgtagcctaagagacactttttcattcaataaaat 449  Q
    ||||||||||||||| ||||||||||| ||||||  || ||||||||||||||||||    
T  2262622 cctagtatttaaacataactttcgtagtctaagatgcagtttttcattcaataaaat 2262678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 301
Target Start/End: Original strand, 12310514 - 12310570
Alignment:
Q  245 aatagtgtagatttgacatccgatgtcagattgactcgaattatacctttttggaaa 301  Q
    ||||||| ||||||| ||||||||||| ||||||||| |||||||| ||||||||||    
T  12310514 aatagtgcagatttggcatccgatgtcggattgactcaaattatacttttttggaaa 12310570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 268 - 306
Target Start/End: Original strand, 2262435 - 2262473
Alignment:
Q  268 tgtcagattgactcgaattatacctttttggaaagctcc 306  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  2262435 tgtcggattgactcgaattatacctttttggaaagctcc 2262473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 453
Target Start/End: Original strand, 12310743 - 12310799
Alignment:
Q  397 gtatttaaacagaactttcgtagcctaagagacactttttcattcaataaaattatc 453  Q
    ||||||||||  ||||||||||||||||||| ||  |||||||||||||||| ||||    
T  12310743 gtatttaaactaaactttcgtagcctaagaggcaacttttcattcaataaaaatatc 12310799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 296
Target Start/End: Complemental strand, 28856235 - 28856183
Alignment:
Q  244 aaatagtgtagatttgacatccgatgtcagattgactcgaattataccttttt 296  Q
    ||||| || ||||||||||||||  || |||||||||||||||||||||||||    
T  28856235 aaatattgcagatttgacatccgtcgttagattgactcgaattataccttttt 28856183  T

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Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 461
Target Start/End: Original strand, 9295212 - 9295279
Alignment:
Q  394 ctagtatttaaacagaactttcgtagcctaagagacactttttcattcaataaaattatcaagaactt 461  Q
    |||||||||||||  |||||| ||||  | ||||||| |||| ||||||||||||||||| |||||||    
T  9295212 ctagtatttaaactaaacttttgtagtttcagagacagttttacattcaataaaattatcgagaactt 9295279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 452
Target Start/End: Complemental strand, 18180892 - 18180837
Alignment:
Q  398 tatttaaacagaactttc-gtagcctaagagacactttttcattcaataaaattat 452  Q
    |||||||||||||| ||  |||||||||||| |||||||| |||||||||||||||    
T  18180892 tatttaaacagaacattatgtagcctaagaggcactttttgattcaataaaattat 18180837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 314
Target Start/End: Original strand, 15081241 - 15081294
Alignment:
Q  261 catccgatgtcagattgactcgaattatacctttttggaaagctccagacctca 314  Q
    |||||| |||| ||||||||||||||||||||||| | ||||||| ||| ||||    
T  15081241 catccggtgtcggattgactcgaattataccttttcgaaaagctctagagctca 15081294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 448
Target Start/End: Original strand, 26150567 - 26150620
Alignment:
Q  395 tagtatttaaacagaactttcgtagcctaagagacactttttcattcaataaaa 448  Q
    ||||||||||||| |||||  | ||| |||||| ||||||||||||||||||||    
T  26150567 tagtatttaaacaaaacttatgcagcttaagaggcactttttcattcaataaaa 26150620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 29019548 - 29019491
Alignment:
Q  245 aatagtgtagatttgacatccgatgtcagattgactcgaattatacctttttggaaag 302  Q
    ||||||| |||||||||||| | |||| || ||||| ||| |||||||||||||||||    
T  29019548 aatagtgcagatttgacatctgttgtccgaatgacttgaaatatacctttttggaaag 29019491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 393 - 449
Target Start/End: Complemental strand, 37490926 - 37490870
Alignment:
Q  393 cctagtatttaaacagaactttcgtagcctaagagacactttttcattcaataaaat 449  Q
    ||||||||| ||||  |||||||||| |||||||  || ||||||||||||||||||    
T  37490926 cctagtattcaaactaaactttcgtaacctaagatgcattttttcattcaataaaat 37490870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 301
Target Start/End: Complemental strand, 37491152 - 37491096
Alignment:
Q  245 aatagtgtagatttgacatccgatgtcagattgactcgaattatacctttttggaaa 301  Q
    ||||||||| ||||  |||||||| || |||| |||||||||||||||||| |||||    
T  37491152 aatagtgtatatttcgcatccgatatcggattaactcgaattataccttttcggaaa 37491096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 190 - 295
Target Start/End: Complemental strand, 8599 - 8494
Alignment:
Q  190 gtaaactggcggcgcgtatcgaagatgacgtggcgcgcaagaatgaatcacttgaaatagtgtagatttgacatccgatgtcagattgactcgaattata 289  Q
    |||||||||||||||||||||||||||| ||| |  | ||||| || ||||||  ||||||| ||||||||||| || ||| ||||||||||||||||||    
T  8599 gtaaactggcggcgcgtatcgaagatgaagtgacatgtaagaaagactcacttagaatagtgcagatttgacattcggtgttagattgactcgaattata 8500  T
Q  290 cctttt 295  Q
    ||||||    
T  8499 cctttt 8494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 400 - 450
Target Start/End: Complemental strand, 8361 - 8311
Alignment:
Q  400 tttaaacagaactttcgtagcctaagagacactttttcattcaataaaatt 450  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8361 tttaaacagaactttcgtagcctaagagacactttttcattcaatcaaatt 8311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 393 - 453
Target Start/End: Complemental strand, 27142688 - 27142628
Alignment:
Q  393 cctagtatttaaacagaactttcgtagcctaagagacactttttcattcaataaaattatc 453  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  27142688 cctagtatttaaacagaactttcgtagcctaagaggcagtttttcattcaataaaattatc 27142628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 192 - 303
Target Start/End: Complemental strand, 2339546 - 2339435
Alignment:
Q  192 aaactggcggcgcgtatcgaagatgacgtggcgcgcaagaatgaatcacttgaaatagtgtagatttgacatccgatgtcagattgactcgaattatacc 291  Q
    ||||||||||||| ||| |||||||| ||||| | ||||||    ||||||||||| ||||||||||   ||||||||||||| |||| |||||||||||    
T  2339546 aaactggcggcgcatattgaagatgaagtggctcacaagaaatgctcacttgaaatggtgtagattttgtatccgatgtcagaatgacccgaattatacc 2339447  T
Q  292 tttttggaaagc 303  Q
    |||| |||||||    
T  2339446 ttttcggaaagc 2339435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 189 - 295
Target Start/End: Complemental strand, 5038898 - 5038792
Alignment:
Q  189 ggtaaactggcggcgcgtatcgaagatgacgtggcgcgcaagaatgaatcacttgaaatagtgtagatttgacatccgatgtcagattgactcgaattat 288  Q
    |||||||||||||| ||| |||||||||| || || |||||||| || ||| ||| ||||||| |||||||  ||||| | ||||||||||| || ||||    
T  5038898 ggtaaactggcggcacgtgtcgaagatgaagtagcacgcaagaaagactcatttggaatagtgcagatttggtatccggtatcagattgacttgagttat 5038799  T
Q  289 acctttt 295  Q
    |||||||    
T  5038798 acctttt 5038792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 393 - 453
Target Start/End: Complemental strand, 8568801 - 8568741
Alignment:
Q  393 cctagtatttaaacagaactttcgtagcctaagagacactttttcattcaataaaattatc 453  Q
    |||||||||||| |  ||| |||||||||||||||||| |||| |||||||||||||||||    
T  8568801 cctagtatttaagctaaacattcgtagcctaagagacagttttccattcaataaaattatc 8568741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 187 - 314
Target Start/End: Complemental strand, 19475124 - 19474997
Alignment:
Q  187 taggtaaactggcggcgcgtatcgaagatgacgtggcgcgcaagaatgaatcacttgaaatagtgtagatttgacatccgatgtcagattgactcgaatt 286  Q
    |||| |||||||||| |  |||||||||||| | || |||||| || |  |||||   ||||||| ||||||| |||||| |||| || |||||||||||    
T  19475124 taggcaaactggcggtggatatcgaagatgaagcggagcgcaaaaaaggttcactcagaatagtgcagatttggcatccggtgtcggaatgactcgaatt 19475025  T
Q  287 atacctttttggaaagctccagacctca 314  Q
    |||| |||||||||| | || |||||||    
T  19475024 atacatttttggaaatccccggacctca 19474997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 295
Target Start/End: Original strand, 10779513 - 10779609
Alignment:
Q  199 cggcgcgtatcgaagatgacgtggcgcgcaagaatgaatcacttgaaatagtgtagatttgacatccgatgtcagattgactcgaattatacctttt 295  Q
    |||||||||| |||||||| |||||||||||||| |  |||||| |||| ||| ||||||  |||| | ||||||| ||||  ||||||| ||||||    
T  10779513 cggcgcgtattgaagatgaagtggcgcgcaagaaaggttcacttaaaatggtgcagattttgcatctggtgtcagaatgacctgaattattcctttt 10779609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 449
Target Start/End: Complemental strand, 2939903 - 2939848
Alignment:
Q  395 tagtatttaaacagaactttcgtagcctaagag-acactttttcattcaataaaat 449  Q
    |||||||||| ||||||||  | |||||||||| ||||||||||||||||||||||    
T  2939903 tagtatttaagcagaacttatgcagcctaagaggacactttttcattcaataaaat 2939848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 448
Target Start/End: Original strand, 3565615 - 3565667
Alignment:
Q  395 tagtatttaaacagaactttcgtagcctaagagacactttttcattcaataaaa 448  Q
    |||||||||||||||||||  |||||| ||||| ||| ||||||||||||||||    
T  3565615 tagtatttaaacagaacttatgtagccaaagaggcac-ttttcattcaataaaa 3565667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 314
Target Start/End: Original strand, 19232010 - 19232042
Alignment:
Q  282 gaattatacctttttggaaagctccagacctca 314  Q
    |||||||||||||||||||||| ||||||||||    
T  19232010 gaattatacctttttggaaagccccagacctca 19232042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 180 - 286
Target Start/End: Complemental strand, 24414437 - 24414331
Alignment:
Q  180 agtgatctaggtaaactggcggcgcgtatcgaagatgacgtggcgcgcaagaatgaatcacttgaaatagtgtagatttgacatccgatgtcagattgac 279  Q
    |||||| |||||||| ||| || |||||| |||||||| ||||||||||||||    ||||||| |||||||||||||||| ||| |||||| |||||||    
T  24414437 agtgatgtaggtaaattggtggtgcgtatagaagatgaagtggcgcgcaagaaatgctcacttggaatagtgtagatttgatatctgatgtcggattgac 24414338  T
Q  280 tcgaatt 286  Q
    |||||||    
T  24414337 tcgaatt 24414331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 200 - 314
Target Start/End: Original strand, 15634318 - 15634431
Alignment:
Q  200 ggcgcgtatcgaagatgacgtggcgcgcaagaatgaatcacttgaaatagtgtagatttgacatccgatgtcagattgactcgaattatacctttttgga 299  Q
    |||| ||||||||| ||| ||||||| |||||| |  ||  |||||||| ||||||||||||||| | |||| ||||||||| ||||||| ||||| |||    
T  15634318 ggcgagtatcgaagttgaagtggcgcacaagaaagc-tcgtttgaaatattgtagatttgacatctggtgtcggattgactcaaattatatcttttcgga 15634416  T
Q  300 aagctccagacctca 314  Q
    ||||| |||||||||    
T  15634417 aagctacagacctca 15634431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 393 - 458
Target Start/End: Original strand, 15634539 - 15634606
Alignment:
Q  393 cctagtatttaaacagaactttcgtagcctaagagacac--tttttcattcaataaaattatcaagaa 458  Q
    ||||||||||||||| ||||||||||| |||||||||||  |||||||||||||||||| ||| ||||    
T  15634539 cctagtatttaaacataactttcgtagtctaagagacactttttttcattcaataaaataatcgagaa 15634606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 398 - 461
Target Start/End: Original strand, 54239489 - 54239552
Alignment:
Q  398 tatttaaacagaactttcgtagcctaagagacactttttcattcaataaaattatcaagaactt 461  Q
    |||||||||| |||||| ||||||||||| ||| ||||||| |||||||||||||| |||||||    
T  54239489 tatttaaacaaaactttggtagcctaagatacagtttttcaatcaataaaattatcgagaactt 54239552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 295
Target Start/End: Original strand, 54239216 - 54239306
Alignment:
Q  205 gtatcgaagatgacgtggcgcgcaagaatgaatcacttgaaatagtgtagatttgacatccgatgtcagattgactcgaattatacctttt 295  Q
    ||||||||||||| ||| ||||||||||    ||| |  |||||||||||||||||||| ||| ||| ||||||||| |||||||| ||||    
T  54239216 gtatcgaagatgaagtgacgcgcaagaaatgctcaatgaaaatagtgtagatttgacattcgaagtcggattgactcaaattatacatttt 54239306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 395 - 452
Target Start/End: Complemental strand, 2053219 - 2053162
Alignment:
Q  395 tagtatttaaacagaactttcgtagcctaagagacactttttcattcaataaaattat 452  Q
    ||||||||||||| |||||  | ||||||||||| |||| ||||||||||||||||||    
T  2053219 tagtatttaaacataacttatgcagcctaagagagacttattcattcaataaaattat 2053162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 452
Target Start/End: Complemental strand, 13085301 - 13085246
Alignment:
Q  398 tatttaaacagaactttc-gtagcctaagagacactttttcattcaataaaattat 452  Q
    |||||||||||||| ||  | ||||||||||||||||||| |||||||||||||||    
T  13085301 tatttaaacagaacattatgcagcctaagagacacttttttattcaataaaattat 13085246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 461
Target Start/End: Original strand, 18490390 - 18490453
Alignment:
Q  398 tatttaaacagaactttcgtagcctaagagacactttttcattcaataaaattatcaagaactt 461  Q
    |||||||||  ||| || |||| |||||||| | |||||||||||||||||||||| |||||||    
T  18490390 tatttaaactaaacattggtagtctaagagatagtttttcattcaataaaattatcgagaactt 18490453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 179 - 287
Target Start/End: Complemental strand, 27484815 - 27484707
Alignment:
Q  179 tagtgatctaggtaaactggcggcgcgtatcgaagatgacgtggcgcgcaagaatgaatcacttgaaatagtgtagatttgacatccgatgtcagattga 278  Q
    ||||||| |||| ||||||| ||| | |||||||||| | ||||||| |||||| |  | |||||||||||||||||||||||||| | |||||||| ||    
T  27484815 tagtgatttaggcaaactggtggcacatatcgaagataaagtggcgcacaagaaaggttaacttgaaatagtgtagatttgacatctggtgtcagatcga 27484716  T
Q  279 ctcgaatta 287  Q
    |||||||||    
T  27484715 ctcgaatta 27484707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 187 - 302
Target Start/End: Original strand, 1150799 - 1150914
Alignment:
Q  187 taggtaaactggcggcgcgtatcgaagatgacgtggcgcgcaagaatgaatcacttgaaatagtgtagatttgacatccgatgtcagattgactcgaatt 286  Q
    |||| ||||| || ||| |||| |||||||| |||||||||||||| || ||  | | ||||||| |||||||||||||||| || |||||| ||||||     
T  1150799 taggcaaactagctgcgtgtattgaagatgaagtggcgcgcaagaaagattcgatgggaatagtgcagatttgacatccgatatccgattgattcgaatg 1150898  T
Q  287 atacctttttggaaag 302  Q
    ||||||||| ||||||    
T  1150899 ataccttttcggaaag 1150914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 394 - 457
Target Start/End: Complemental strand, 1697211 - 1697148
Alignment:
Q  394 ctagtatttaaacagaactttcgtagcctaagagacactttttcattcaataaaattatcaaga 457  Q
    ||||||||||||||||||||  | | | ||||||| ||||||||||||||||||||||||||||    
T  1697211 ctagtatttaaacagaacttatgcaacttaagagatactttttcattcaataaaattatcaaga 1697148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 416 - 461
Target Start/End: Complemental strand, 33528353 - 33528308
Alignment:
Q  416 gtagcctaagagacactttttcattcaataaaattatcaagaactt 461  Q
    |||| ||||||||||||||||||||||||||||||||  |||||||    
T  33528353 gtaggctaagagacactttttcattcaataaaattatagagaactt 33528308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 448
Target Start/End: Original strand, 19949880 - 19949933
Alignment:
Q  395 tagtatttaaacagaactttcgtagcctaagagacactttttcattcaataaaa 448  Q
    |||||||||||||||||||  | |||||||||| |||||| ||||| |||||||    
T  19949880 tagtatttaaacagaacttatgcagcctaagagtcactttatcattgaataaaa 19949933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 182 - 315
Target Start/End: Original strand, 16931136 - 16931269
Alignment:
Q  182 tgatctaggtaaactggcggcgcgtatcgaagatgacgtggcgcgcaagaatgaatcacttgaaatagtgtagattt-gacatccgatgtcagattgact 280  Q
    |||| |||| ||| |||||||||||||||||||| | |||||  |||||||    ||||||| ||||||| |||||| | |||||| |||| ||||| ||    
T  16931136 tgatgtaggcaaattggcggcgcgtatcgaagattaagtggcatgcaagaaatgctcacttggaatagtgcagattttggcatccggtgtcggattggct 16931235  T
Q  281 cgaattatacctttttggaaagctccagacctcat 315  Q
    ||||||||| ||||||| ||||| |||||||||||    
T  16931236 cgaattataactttttgaaaagc-ccagacctcat 16931269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 182 - 315
Target Start/End: Original strand, 16936519 - 16936652
Alignment:
Q  182 tgatctaggtaaactggcggcgcgtatcgaagatgacgtggcgcgcaagaatgaatcacttgaaatagtgtagattt-gacatccgatgtcagattgact 280  Q
    |||| |||| ||| |||||||||||||||||||| | |||||  |||||||    ||||||| ||||||| |||||| | |||||| |||| ||||| ||    
T  16936519 tgatgtaggcaaattggcggcgcgtatcgaagattaagtggcatgcaagaaatgctcacttggaatagtgcagattttggcatccggtgtcggattggct 16936618  T
Q  281 cgaattatacctttttggaaagctccagacctcat 315  Q
    ||||||||| ||||||| ||||| |||||||||||    
T  16936619 cgaattataactttttgaaaagc-ccagacctcat 16936652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 395 - 452
Target Start/End: Complemental strand, 5678423 - 5678366
Alignment:
Q  395 tagtatttaaacagaactttcgtagcctaagagacactttttcattcaataaaattat 452  Q
    |||||||||||||||||||  | ||| |||||||||||||||||||||||||||||||    
T  5678423 tagtatttaaacagaacttatgcagcttaagagacactttttcattcaataaaattat 5678366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 395 - 452
Target Start/End: Complemental strand, 5703475 - 5703418
Alignment:
Q  395 tagtatttaaacagaactttcgtagcctaagagacactttttcattcaataaaattat 452  Q
    |||||||||||||||||||  | ||| |||||||||||||||||||||||||||||||    
T  5703475 tagtatttaaacagaacttatgcagcttaagagacactttttcattcaataaaattat 5703418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 205 - 302
Target Start/End: Complemental strand, 721960 - 721861
Alignment:
Q  205 gtatcgaagatgacgtggcgcgcaagaatgaatcacttgaaatagtgtagatttgacatccgatgtcagattgactcgaat--tatacctttttggaaag 302  Q
    ||||||||||||| ||||| | |||||| || ||| |   ||||||||||||||| |||||| |||| ||||||||| |||  |||||||||||||||||    
T  721960 gtatcgaagatgaagtggcacacaagaaagactcaatgtgaatagtgtagatttgccatccggtgtcggattgactcaaattatatacctttttggaaag 721861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 290
Target Start/End: Complemental strand, 22572828 - 22572741
Alignment:
Q  203 gcgtatcgaagatgacgtggcgcgcaagaatgaatcacttgaaatagtgtagatttgacatccgatgtcagattgactcgaattatac 290  Q
    ||||||| ||| ||| |||||||| ||||| || ||||||| ||||| | | ||||| |||||||||||  | |||||||||||||||    
T  22572828 gcgtatcaaaggtgaagtggcgcgtaagaaagactcacttggaatagcgcaaatttggcatccgatgtcgaaatgactcgaattatac 22572741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 406 - 452
Target Start/End: Complemental strand, 13882886 - 13882840
Alignment:
Q  406 cagaactttcgtagcctaagagacactttttcattcaataaaattat 452  Q
    ||||||||  ||| ||||||||||||||||| |||||||||||||||    
T  13882886 cagaacttatgtatcctaagagacactttttgattcaataaaattat 13882840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 395 - 461
Target Start/End: Complemental strand, 15385164 - 15385098
Alignment:
Q  395 tagtatttaaacagaactttcgtagcctaagagacactttttcattcaataaaattatcaagaactt 461  Q
    ||||||||||| ||||||||||| ||| |  ||||| |||||||||||||||||||||| |||||||    
T  15385164 tagtatttaaatagaactttcgtggcccataagacattttttcattcaataaaattatcgagaactt 15385098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 395 - 461
Target Start/End: Complemental strand, 35160936 - 35160871
Alignment:
Q  395 tagtatttaaacagaactttcgtagcctaagagacactttttcattcaataaaattatcaagaactt 461  Q
    |||||||||||||||||||| |||| ||||||| | | ||||||||||||||||||||| |||||||    
T  35160936 tagtatttaaacagaactttggtagtctaagaggc-cgttttcattcaataaaattatcgagaactt 35160871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 453
Target Start/End: Original strand, 7775315 - 7775355
Alignment:
Q  413 ttcgtagcctaagagacactttttcattcaataaaattatc 453  Q
    |||||||||||||||||| |||| |||||||||||||||||    
T  7775315 ttcgtagcctaagagacatttttccattcaataaaattatc 7775355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 295
Target Start/End: Complemental strand, 35161208 - 35161117
Alignment:
Q  204 cgtatcgaagatgacgtggcgcgcaagaatgaatcacttgaaatagtgtagatttgacatccgatgtcagattgactcgaattatacctttt 295  Q
    |||||||||||||| ||| ||  ||||||    ||| ||| |||||||||||||||||||||| |||  | |||| ||||||||||||||||    
T  35161208 cgtatcgaagatgaagtgacgtacaagaaatgttcatttggaatagtgtagatttgacatccgttgttgggttgattcgaattatacctttt 35161117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 289
Target Start/End: Original strand, 14503723 - 14503831
Alignment:
Q  181 gtgatctaggtaaactggcggcgcgtatcgaagatgacgtggcgcgcaagaatgaatcacttgaaatagtgtagatttgacatccgatgtcagattgact 280  Q
    ||||| |||| ||| |||| || | ||| |||||| | |||||||||||||| |  ||| |  |||||||| |||||| ||||| | |||||||||||||    
T  14503723 gtgatgtaggcaaagtggctgcacttattgaagataaagtggcgcgcaagaaaggttcaataaaaatagtgcagatttaacatctggtgtcagattgact 14503822  T
Q  281 cgaattata 289  Q
    | |||||||    
T  14503823 caaattata 14503831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 393 - 461
Target Start/End: Complemental strand, 36844542 - 36844474
Alignment:
Q  393 cctagtatttaaacagaactttcgtagcctaagagacactttttcattcaataaaattatcaagaactt 461  Q
    ||||||||||||||  ||||||||| | |||||||    ||||||||| |||||||||||| |||||||    
T  36844542 cctagtatttaaactaaactttcgtcgtctaagaggttgtttttcatttaataaaattatcgagaactt 36844474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 395 - 452
Target Start/End: Complemental strand, 18725805 - 18725748
Alignment:
Q  395 tagtatttaaacagaactttcgtagcctaagagacactttttcattcaataaaattat 452  Q
    ||||||||||||| |||||  |  | ||||||||||||||||||||||||||||||||    
T  18725805 tagtatttaaacaaaacttatgcggtctaagagacactttttcattcaataaaattat 18725748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 302
Target Start/End: Original strand, 5840761 - 5840818
Alignment:
Q  245 aatagtgtagatttgacatccgatgtcagattgactcgaattatacctttttggaaag 302  Q
    ||||||| ||||||| || ||| |||| |||||||||||||||||| |||| ||||||    
T  5840761 aatagtgcagatttggcaaccggtgtcggattgactcgaattatacattttcggaaag 5840818  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 393 - 461
Target Start/End: Original strand, 5841182 - 5841249
Alignment:
Q  393 cctagtatttaaacagaactttcgtagcctaagagacactttttcattcaataaaattatcaagaactt 461  Q
    |||||||||| |||  ||| || ||||||||||||||  |||| ||||||||||||||||| |||||||    
T  5841182 cctagtattttaactaaacatttgtagcctaagagactatttt-cattcaataaaattatcgagaactt 5841249  T

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