View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16994_low_8 (Length: 452)
Name: NF16994_low_8
Description: NF16994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16994_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 204 - 438
Target Start/End: Original strand, 3864827 - 3865061
Alignment:
| Q |
204 |
caattagattcaaaactaaattgtttcttgtacattaaaaacgaatcttcattaagagaatctatcaaactcaacatcagtaatacctttatctttttca |
303 |
Q |
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| T |
3864827 |
caattagattcaaaactaaattgtttcttgtacattaaaaacgaatcttcattaagagaatccatcaaactcaacatcagtaatacctttatctttttca |
3864926 |
T |
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| Q |
304 |
agaacttttagcatcttccaatttaacatgaaattgttcctcctccaatggaagcttgatttcaaatccatcgggtaggaaatagtttaatcttgatatt |
403 |
Q |
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| T |
3864927 |
agaacttttagcatcttccaatttaacatgaacttgttcctcctccaatggaagcttgatttcatatccatcaggtaggaagtagtttaatcttgatatt |
3865026 |
T |
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| Q |
404 |
aaatcgctatgaccttcaaatattttcttcatttt |
438 |
Q |
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| T |
3865027 |
aaatcactatgaccttcaaatattttcttcatttt |
3865061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 336 - 425
Target Start/End: Original strand, 3865348 - 3865437
Alignment:
| Q |
336 |
attgttcctcctccaatggaagcttgatttcaaatccatcgggtaggaaatagtttaatcttgatattaaatcgctatgaccttcaaata |
425 |
Q |
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| T |
3865348 |
attgttcctcctccgatggaagcttgattgcatatccatcaggcatgtaatagttcaatcttaatataagatctctatgaccttcaaata |
3865437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 425
Target Start/End: Original strand, 3865734 - 3865807
Alignment:
| Q |
352 |
tggaagcttgatttcaaatccatcgggtaggaaatagtttaatcttgatattaaatcgctatgaccttcaaata |
425 |
Q |
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| T |
3865734 |
tggaagcttgatcttaaatccatcaggcatgaagtagttcaatcttgatataagatctctatgaccttcgaata |
3865807 |
T |
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