View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16994_low_9 (Length: 350)
Name: NF16994_low_9
Description: NF16994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16994_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 17 - 340
Target Start/End: Complemental strand, 13334361 - 13334027
Alignment:
| Q |
17 |
agcaagtgcataaacatgctgaaattaaaaattaa-ctttatttatctagtgaagtacaatttgtttaataatcataacatattcatatcatccattaag |
115 |
Q |
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| T |
13334361 |
agcaagtgcataaacatgctgaaattaaaaattaaactttatttatctagtgaagtacaatttgtttaataatcataacatattcatatcatccattaag |
13334262 |
T |
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| Q |
116 |
ttca----------ggaaacataaacattacaacaatagaaacataaaagaacttagcaatagtaatatcctttgaacacacactttattttcttcttcc |
205 |
Q |
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| T |
13334261 |
ttcatccttattaaggaaacataaacattataactatagaaacataaaagaacttagcaatagtaatatcctttgaacacacactttattttcttcttcc |
13334162 |
T |
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| Q |
206 |
atatgtgatgctctctacaaatttgaagtgaaagaccatgaaagaatgtcatgtgtttcggcaagttcacctgtggcaccggagaaaccaacaaggacat |
305 |
Q |
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| T |
13334161 |
atatgtgatgctctctacaaatttgaagtgaaagaccatgaaagaatgtcatgtgtttcggcaagttcacctgtggcaccggagaaaccaaccaggacat |
13334062 |
T |
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| Q |
306 |
attcgggcagaatagccgcaaaatcaacagtataa |
340 |
Q |
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| T |
13334061 |
attcgggcagaatagccgcaaaatcaacagtataa |
13334027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 298
Target Start/End: Complemental strand, 13308986 - 13308901
Alignment:
| Q |
213 |
atgctctctacaaatttgaagtgaaagaccatgaaagaatgtcatgtgtttcggcaagttcacctgtggcaccggagaaaccaaca |
298 |
Q |
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| T |
13308986 |
atgctctctacaagtttgaaacaaaggaccaagaaagaatatcatgtgtttcagcaacttgaccggtggcacctgagaaaccaaca |
13308901 |
T |
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