View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16995_low_10 (Length: 376)
Name: NF16995_low_10
Description: NF16995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16995_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 16 - 325
Target Start/End: Original strand, 10483687 - 10483994
Alignment:
| Q |
16 |
atgcaagacttaaagaagaaacttttgatcttcgccaaatggtagctgacatgcaaattggtaactcttttccttgcaacatggaagatttatgtgaaat |
115 |
Q |
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| T |
10483687 |
atgcaagacttaaggaagaaacttttgatcttcgccaaatggtagctgacatgcaaattggtaactcttttccttgcaacatggaagatttatgtgaaat |
10483786 |
T |
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| Q |
116 |
tccatgcaacacatctcaacacaaagatgatgattcctctaaaattcatgattgagatgacactattttcatgtttccattataacgatgttgcttcttt |
215 |
Q |
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| T |
10483787 |
tccatgcaacacatctcaacacaaagatgatgattcctctaaaattcatgattgagatgacactattttcatgtttccattataacgatgttgcttcttt |
10483886 |
T |
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| Q |
216 |
taaattttctatgatccatttacttgtccattcatttggacaagcatgagttttagaagcataaatatatgaaataaaagctttagatattgatgttcat |
315 |
Q |
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| T |
10483887 |
taaattttctatgatccatttacttgtccattcatttggacaagtatgagttttagaagcataa--atatgaaataaaagctttagatattgatgttcat |
10483984 |
T |
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| Q |
316 |
tacttgactt |
325 |
Q |
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| T |
10483985 |
tacttgactt |
10483994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 16 - 172
Target Start/End: Complemental strand, 4951985 - 4951832
Alignment:
| Q |
16 |
atgcaagacttaaagaagaaacttttgatcttcgccaaatggtagctgacatgcaaattggtaactcttttccttgcaacatggaagatttatgtgaaat |
115 |
Q |
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| T |
4951985 |
atgcacgacttaaagaagaaacttttgatcttcgtcaaatggtagctgacatgcaaattggtaactcttttccttgcaacatggaagatttatgtgaaat |
4951886 |
T |
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| Q |
116 |
tccatgcaacacatctcaacacaaagatgatgattcctctaaaattcatgattgaga |
172 |
Q |
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| T |
4951885 |
tccatgcaacacatctcaacacaaaga---tgattcctctaaaattcatgattgaga |
4951832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 323
Target Start/End: Complemental strand, 4951736 - 4951645
Alignment:
| Q |
234 |
tttacttgtccat--tcatttggacaagcatgagttttagaagcataaatatatgaaataaaagct----ttagatattgatgttcattacttgac |
323 |
Q |
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||||||||||||| ||||| ||||||| |||||||||||||||||| |||| ||||||||||| |||||| ||||||||||||||||||| |
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| T |
4951736 |
tttacttgtccatattcatt-ggacaagtatgagttttagaagcatatatat---aaataaaagctttaattagatgttgatgttcattacttgac |
4951645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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