View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16995_low_12 (Length: 308)
Name: NF16995_low_12
Description: NF16995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16995_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 47294004 - 47294301
Alignment:
| Q |
1 |
tatggagttatgcagcagatatttctttgttttattatttttaatttcaagaaaaataaattaatagaagnnnnnnnnnnnnnnnnnnnnnatttgtatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
47294004 |
tatggagttatgcagcagatatttctttgttttattatttttaatttcaagaaaaataaattaatagaagtttttttttgttggtttttttatttgtatt |
47294103 |
T |
|
| Q |
101 |
tagacaaagacttttagacaaggaaatatttctctttcgtccttttcattaaactaaagatgcagagcttgtaattagtttataattgcaggcaattgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47294104 |
tagacaaagacttttagacaaggaaatatttctctttcgtccttttcattaaactaaagatgcagagcttgtaattagtttataattgcaggcaattgtt |
47294203 |
T |
|
| Q |
201 |
tttctttgggtgtataatccaaatatttatatatacactaataattattaaatgatggaatttgttccannnnnnnacttgaatatccctttgctact |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
47294204 |
tttctttgggtgtataatccaaatatttatatatacactaatcattattaaatgatggaatttgttccatttttttacttgaatatccctttgctact |
47294301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 148 - 223
Target Start/End: Original strand, 56043786 - 56043861
Alignment:
| Q |
148 |
attaaactaaagatgcagagcttgtaattagtttataattgcaggcaattgtttttctttgggtgtataatccaaa |
223 |
Q |
| |
|
|||||||| |||||||||| | |||||||||||||||||||||||||||||| | ||||||||||||| ||||| |
|
|
| T |
56043786 |
attaaactgaagatgcagaatgtataattagtttataattgcaggcaattgtttatgtttgggtgtataacccaaa |
56043861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University